data_6HGR # _model_server_result.job_id Mzbk51dTP5uueqA_-DgxWA _model_server_result.datetime_utc '2024-11-22 05:39:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hgr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":200}' # _entry.id 6HGR # _exptl.entry_id 6HGR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 76.43 _cell.angle_beta 69.24 _cell.angle_gamma 61.29 _cell.entry_id 6HGR _cell.length_a 47.585 _cell.length_b 47.625 _cell.length_c 47.846 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HGR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 173 n n P O2P IMP sing 174 n n P O3P IMP sing 175 n n P O5' IMP sing 176 n n O2P HOP2 IMP sing 177 n n O3P HOP3 IMP sing 178 n n O5' C5' IMP sing 179 n n C5' C4' IMP sing 180 n n C5' "H5'1" IMP sing 181 n n C5' "H5'2" IMP sing 182 n n C4' O4' IMP sing 183 n n C4' C3' IMP sing 184 n n C4' H4' IMP sing 185 n n O4' C1' IMP sing 186 n n C3' O3' IMP sing 187 n n C3' C2' IMP sing 188 n n C3' H3' IMP sing 189 n n O3' HO3' IMP sing 190 n n C2' O2' IMP sing 191 n n C2' C1' IMP sing 192 n n C2' H2' IMP sing 193 n n O2' HO2' IMP sing 194 n n C1' N9 IMP sing 195 n n C1' H1' IMP sing 196 n n N9 C8 IMP sing 197 n y N9 C4 IMP sing 198 n y C8 N7 IMP doub 199 n y C8 H8 IMP sing 200 n n N7 C5 IMP sing 201 n y C5 C6 IMP sing 202 n n C5 C4 IMP doub 203 n y C6 O6 IMP doub 204 n n C6 N1 IMP sing 205 n n N1 C2 IMP sing 206 n n N1 HN1 IMP sing 207 n n C2 N3 IMP doub 208 n n C2 H2 IMP sing 209 n n N3 C4 IMP sing 210 n n # _atom_sites.entry_id 6HGR _atom_sites.fract_transf_matrix[1][1] 0.021015 _atom_sites.fract_transf_matrix[1][2] -0.01151 _atom_sites.fract_transf_matrix[1][3] -0.007087 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023941 _atom_sites.fract_transf_matrix[2][3] -0.001882 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022421 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IMP A 1 200 200 IMP IMP . D 2 IMP B 1 200 200 IMP IMP . E 3 HOH A 1 301 301 HOH HOH . E 3 HOH A 2 302 302 HOH HOH . E 3 HOH A 3 303 303 HOH HOH . E 3 HOH A 4 304 304 HOH HOH . E 3 HOH A 5 305 305 HOH HOH . E 3 HOH A 6 306 306 HOH HOH . E 3 HOH A 7 307 307 HOH HOH . E 3 HOH A 8 308 308 HOH HOH . E 3 HOH A 9 309 309 HOH HOH . E 3 HOH A 10 310 310 HOH HOH . E 3 HOH A 11 311 311 HOH HOH . E 3 HOH A 12 312 312 HOH HOH . E 3 HOH A 13 313 313 HOH HOH . E 3 HOH A 14 314 314 HOH HOH . E 3 HOH A 15 315 315 HOH HOH . E 3 HOH A 16 316 316 HOH HOH . E 3 HOH A 17 317 317 HOH HOH . E 3 HOH A 18 318 318 HOH HOH . E 3 HOH A 19 319 319 HOH HOH . E 3 HOH A 20 320 320 HOH HOH . E 3 HOH A 21 321 321 HOH HOH . E 3 HOH A 22 322 322 HOH HOH . E 3 HOH A 23 323 323 HOH HOH . E 3 HOH A 24 324 324 HOH HOH . E 3 HOH A 25 325 325 HOH HOH . E 3 HOH A 26 326 326 HOH HOH . E 3 HOH A 27 327 327 HOH HOH . E 3 HOH A 28 328 328 HOH HOH . E 3 HOH A 29 329 329 HOH HOH . E 3 HOH A 30 330 330 HOH HOH . E 3 HOH A 31 331 331 HOH HOH . E 3 HOH A 32 332 332 HOH HOH . E 3 HOH A 33 333 333 HOH HOH . E 3 HOH A 34 334 334 HOH HOH . E 3 HOH A 35 335 335 HOH HOH . E 3 HOH A 36 336 336 HOH HOH . E 3 HOH A 37 337 337 HOH HOH . E 3 HOH A 38 338 338 HOH HOH . E 3 HOH A 39 339 339 HOH HOH . E 3 HOH A 40 340 340 HOH HOH . E 3 HOH A 41 341 341 HOH HOH . E 3 HOH A 42 342 342 HOH HOH . E 3 HOH A 43 343 343 HOH HOH . E 3 HOH A 44 344 344 HOH HOH . E 3 HOH A 45 345 345 HOH HOH . E 3 HOH A 46 346 346 HOH HOH . E 3 HOH A 47 347 347 HOH HOH . E 3 HOH A 48 348 348 HOH HOH . E 3 HOH A 49 349 349 HOH HOH . E 3 HOH A 50 350 350 HOH HOH . E 3 HOH A 51 351 351 HOH HOH . E 3 HOH A 52 352 352 HOH HOH . E 3 HOH A 53 353 353 HOH HOH . E 3 HOH A 54 354 354 HOH HOH . E 3 HOH A 55 355 355 HOH HOH . E 3 HOH A 56 356 356 HOH HOH . E 3 HOH A 57 357 357 HOH HOH . E 3 HOH A 58 358 358 HOH HOH . E 3 HOH A 59 359 359 HOH HOH . E 3 HOH A 60 360 360 HOH HOH . E 3 HOH A 61 361 361 HOH HOH . E 3 HOH A 62 362 362 HOH HOH . E 3 HOH A 63 363 363 HOH HOH . E 3 HOH A 64 364 364 HOH HOH . E 3 HOH A 65 365 365 HOH HOH . E 3 HOH A 66 366 366 HOH HOH . E 3 HOH A 67 367 367 HOH HOH . E 3 HOH A 68 368 368 HOH HOH . E 3 HOH A 69 369 369 HOH HOH . E 3 HOH A 70 370 370 HOH HOH . E 3 HOH A 71 371 371 HOH HOH . E 3 HOH A 72 372 372 HOH HOH . E 3 HOH A 73 373 373 HOH HOH . E 3 HOH A 74 374 374 HOH HOH . E 3 HOH A 75 375 375 HOH HOH . E 3 HOH A 76 376 376 HOH HOH . F 3 HOH B 1 301 301 HOH HOH . F 3 HOH B 2 302 302 HOH HOH . F 3 HOH B 3 303 303 HOH HOH . F 3 HOH B 4 304 304 HOH HOH . F 3 HOH B 5 305 305 HOH HOH . F 3 HOH B 6 306 306 HOH HOH . F 3 HOH B 7 307 307 HOH HOH . F 3 HOH B 8 308 308 HOH HOH . F 3 HOH B 9 309 309 HOH HOH . F 3 HOH B 10 310 310 HOH HOH . F 3 HOH B 11 311 311 HOH HOH . F 3 HOH B 12 312 312 HOH HOH . F 3 HOH B 13 313 313 HOH HOH . F 3 HOH B 14 314 314 HOH HOH . F 3 HOH B 15 315 315 HOH HOH . F 3 HOH B 16 316 316 HOH HOH . F 3 HOH B 17 317 317 HOH HOH . F 3 HOH B 18 318 318 HOH HOH . F 3 HOH B 19 319 319 HOH HOH . F 3 HOH B 20 320 320 HOH HOH . F 3 HOH B 21 321 321 HOH HOH . F 3 HOH B 22 322 322 HOH HOH . F 3 HOH B 23 323 323 HOH HOH . F 3 HOH B 24 324 324 HOH HOH . F 3 HOH B 25 325 325 HOH HOH . F 3 HOH B 26 326 326 HOH HOH . F 3 HOH B 27 327 327 HOH HOH . F 3 HOH B 28 328 328 HOH HOH . F 3 HOH B 29 329 329 HOH HOH . F 3 HOH B 30 330 330 HOH HOH . F 3 HOH B 31 331 331 HOH HOH . F 3 HOH B 32 332 332 HOH HOH . F 3 HOH B 33 333 333 HOH HOH . F 3 HOH B 34 334 334 HOH HOH . F 3 HOH B 35 335 335 HOH HOH . F 3 HOH B 36 336 336 HOH HOH . F 3 HOH B 37 337 337 HOH HOH . F 3 HOH B 38 338 338 HOH HOH . F 3 HOH B 39 339 339 HOH HOH . F 3 HOH B 40 340 340 HOH HOH . F 3 HOH B 41 341 341 HOH HOH . F 3 HOH B 42 342 342 HOH HOH . F 3 HOH B 43 343 343 HOH HOH . F 3 HOH B 44 344 344 HOH HOH . F 3 HOH B 45 345 345 HOH HOH . F 3 HOH B 46 346 346 HOH HOH . F 3 HOH B 47 347 347 HOH HOH . F 3 HOH B 48 348 348 HOH HOH . F 3 HOH B 49 349 349 HOH HOH . F 3 HOH B 50 350 350 HOH HOH . F 3 HOH B 51 351 351 HOH HOH . F 3 HOH B 52 352 352 HOH HOH . F 3 HOH B 53 353 353 HOH HOH . F 3 HOH B 54 354 354 HOH HOH . F 3 HOH B 55 355 355 HOH HOH . F 3 HOH B 56 356 356 HOH HOH . F 3 HOH B 57 357 357 HOH HOH . F 3 HOH B 58 358 358 HOH HOH . F 3 HOH B 59 359 359 HOH HOH . F 3 HOH B 60 360 360 HOH HOH . F 3 HOH B 61 361 361 HOH HOH . F 3 HOH B 62 362 362 HOH HOH . F 3 HOH B 63 363 363 HOH HOH . F 3 HOH B 64 364 364 HOH HOH . F 3 HOH B 65 365 365 HOH HOH . F 3 HOH B 66 366 366 HOH HOH . F 3 HOH B 67 367 367 HOH HOH . F 3 HOH B 68 368 368 HOH HOH . F 3 HOH B 69 369 369 HOH HOH . F 3 HOH B 70 370 370 HOH HOH . F 3 HOH B 71 371 371 HOH HOH . F 3 HOH B 72 372 372 HOH HOH . F 3 HOH B 73 373 373 HOH HOH . F 3 HOH B 74 374 374 HOH HOH . F 3 HOH B 75 375 375 HOH HOH . F 3 HOH B 76 376 376 HOH HOH . F 3 HOH B 77 377 377 HOH HOH . F 3 HOH B 78 378 378 HOH HOH . F 3 HOH B 79 379 379 HOH HOH . F 3 HOH B 80 380 380 HOH HOH . F 3 HOH B 81 381 381 HOH HOH . F 3 HOH B 82 382 382 HOH HOH . F 3 HOH B 83 383 383 HOH HOH . F 3 HOH B 84 384 384 HOH HOH . F 3 HOH B 85 385 385 HOH HOH . F 3 HOH B 86 386 386 HOH HOH . F 3 HOH B 87 387 387 HOH HOH . F 3 HOH B 88 388 388 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . D 2 32.568 7.388 6.853 1 20.16 ? P IMP 200 B 1 HETATM 2 O O1P IMP . . . D 2 31.23 7.847 6.277 1 21.66 ? O1P IMP 200 B 1 HETATM 3 O O2P IMP . . . D 2 32.555 7.146 8.343 1 18.51 ? O2P IMP 200 B 1 HETATM 4 O O3P IMP . . . D 2 33.736 8.276 6.453 1 19.2 ? O3P IMP 200 B 1 HETATM 5 O O5' IMP . . . D 2 32.805 6.014 6.137 1 23.55 ? O5' IMP 200 B 1 HETATM 6 C C5' IMP . . . D 2 31.919 5.098 6.616 1 26.09 ? C5' IMP 200 B 1 HETATM 7 C C4' IMP . . . D 2 31.65 3.995 5.694 1 26.96 ? C4' IMP 200 B 1 HETATM 8 O O4' IMP . . . D 2 32.291 3.856 4.447 1 24.78 ? O4' IMP 200 B 1 HETATM 9 C C3' IMP . . . D 2 31.063 2.713 6.174 1 26.1 ? C3' IMP 200 B 1 HETATM 10 O O3' IMP . . . D 2 29.759 2.481 5.627 1 33.57 ? O3' IMP 200 B 1 HETATM 11 C C2' IMP . . . D 2 32.119 1.774 5.637 1 31.8 ? C2' IMP 200 B 1 HETATM 12 O O2' IMP . . . D 2 31.455 0.574 5.227 1 27.26 ? O2' IMP 200 B 1 HETATM 13 C C1' IMP . . . D 2 32.82 2.529 4.484 1 24.04 ? C1' IMP 200 B 1 HETATM 14 N N9 IMP . . . D 2 34.291 2.589 4.712 1 22.3 ? N9 IMP 200 B 1 HETATM 15 C C8 IMP . . . D 2 35.082 3.672 4.834 1 21.09 ? C8 IMP 200 B 1 HETATM 16 N N7 IMP . . . D 2 36.377 3.298 5.024 1 22.16 ? N7 IMP 200 B 1 HETATM 17 C C5 IMP . . . D 2 36.435 1.92 5.051 1 21.98 ? C5 IMP 200 B 1 HETATM 18 C C6 IMP . . . D 2 37.459 0.94 5.204 1 21.88 ? C6 IMP 200 B 1 HETATM 19 O O6 IMP . . . D 2 38.655 1.234 5.421 1 21.88 ? O6 IMP 200 B 1 HETATM 20 N N1 IMP . . . D 2 37.06 -0.362 5.167 1 22.07 ? N1 IMP 200 B 1 HETATM 21 C C2 IMP . . . D 2 35.77 -0.704 4.978 1 28.12 ? C2 IMP 200 B 1 HETATM 22 N N3 IMP . . . D 2 34.774 0.183 4.818 1 26.17 ? N3 IMP 200 B 1 HETATM 23 C C4 IMP . . . D 2 35.115 1.507 4.851 1 24.19 ? C4 IMP 200 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 964 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 23 #