data_6HGY # _model_server_result.job_id lNyrr534Q4Vr7KhGxSErsg _model_server_result.datetime_utc '2024-12-13 13:48:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hgy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6HGY # _exptl.entry_id 6HGY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 791.973 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'THALASSOSPIRAMIDE C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.91 _cell.angle_gamma 90 _cell.entry_id 6HGY _cell.length_a 45.56 _cell.length_b 44.884 _cell.length_c 49.99 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HGY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 155 A CYS 155 1_555 A SG CYS 204 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A SG CYS 25 A CYS 25 1_555 B C59 G4B . A G4B 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? # _chem_comp.formula 'C43 H61 N5 O9' _chem_comp.formula_weight 791.973 _chem_comp.id G4B _chem_comp.mon_nstd_flag . _chem_comp.name 'THALASSOSPIRAMIDE C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C61 C60 G4B sing 83 n n C60 C62 G4B sing 84 n n C60 C53 G4B sing 85 n n N55 C53 G4B sing 86 n n N55 C56 G4B sing 87 n n C53 C51 G4B sing 88 n n O57 C56 G4B doub 89 n n O52 C51 G4B doub 90 n n C47 C48 G4B doub 91 n y C47 C46 G4B sing 92 n y C56 C58 G4B sing 93 n n C51 N50 G4B sing 94 n n O49 C46 G4B sing 95 n n C48 C43 G4B sing 96 n y C46 C45 G4B doub 97 n y C58 C59 G4B sing 98 n n N50 C40 G4B sing 99 n n C43 C42 G4B sing 100 n n C43 C44 G4B doub 101 n y C45 C44 G4B sing 102 n y C42 C40 G4B sing 103 n n C59 C34 G4B sing 104 n n C40 C38 G4B sing 105 n n O37 C38 G4B sing 106 n n O37 C36 G4B sing 107 n n C38 O39 G4B doub 108 n n C36 C34 G4B sing 109 n n C34 N33 G4B sing 110 n n N33 C31 G4B sing 111 n n C2 C1 G4B sing 112 n n C2 C3 G4B sing 113 n n C4 C3 G4B sing 114 n n C4 C5 G4B sing 115 n n C31 C26 G4B sing 116 n n C31 O32 G4B doub 117 n n O24 C23 G4B doub 118 n n C26 C28 G4B sing 119 n n C26 N25 G4B sing 120 n n C29 C28 G4B sing 121 n n C23 N25 G4B sing 122 n n C23 C13 G4B sing 123 n n C6 C5 G4B sing 124 n n C6 C7 G4B sing 125 n n C28 C30 G4B sing 126 n n C9 C10 G4B sing 127 n n C9 C8 G4B sing 128 n n N12 C10 G4B sing 129 n n N12 C13 G4B sing 130 n n C10 O11 G4B doub 131 n n C13 C15 G4B sing 132 n n C7 C8 G4B doub 133 z n C15 C16 G4B sing 134 n n C21 C16 G4B doub 135 n y C21 C20 G4B sing 136 n y C16 C17 G4B sing 137 n y C20 C19 G4B doub 138 n y C17 C18 G4B doub 139 n y C19 C18 G4B sing 140 n y C19 O22 G4B sing 141 n n C1 H1 G4B sing 142 n n C1 H2 G4B sing 143 n n C1 H3 G4B sing 144 n n C2 H4 G4B sing 145 n n C2 H5 G4B sing 146 n n C3 H6 G4B sing 147 n n C3 H7 G4B sing 148 n n C4 H8 G4B sing 149 n n C4 H9 G4B sing 150 n n C5 H10 G4B sing 151 n n C5 H11 G4B sing 152 n n C6 H12 G4B sing 153 n n C6 H13 G4B sing 154 n n C7 H14 G4B sing 155 n n C8 H15 G4B sing 156 n n C15 H16 G4B sing 157 n n C15 H17 G4B sing 158 n n C17 H18 G4B sing 159 n n C18 H19 G4B sing 160 n n C21 H20 G4B sing 161 n n C30 H21 G4B sing 162 n n C30 H22 G4B sing 163 n n C30 H23 G4B sing 164 n n C34 H24 G4B sing 165 n n C36 H25 G4B sing 166 n n C36 H26 G4B sing 167 n n C40 H27 G4B sing 168 n n C9 H28 G4B sing 169 n n C9 H29 G4B sing 170 n n N12 H30 G4B sing 171 n n C13 H31 G4B sing 172 n n C20 H32 G4B sing 173 n n O22 H33 G4B sing 174 n n N25 H34 G4B sing 175 n n C26 H35 G4B sing 176 n n C28 H36 G4B sing 177 n n C29 H37 G4B sing 178 n n C29 H38 G4B sing 179 n n C29 H39 G4B sing 180 n n N33 H40 G4B sing 181 n n C42 H41 G4B sing 182 n n C42 H42 G4B sing 183 n n C44 H43 G4B sing 184 n n C45 H44 G4B sing 185 n n C47 H45 G4B sing 186 n n C48 H46 G4B sing 187 n n O49 H47 G4B sing 188 n n N50 H48 G4B sing 189 n n C53 H49 G4B sing 190 n n N55 H50 G4B sing 191 n n C58 H51 G4B sing 192 n n C58 H52 G4B sing 193 n n C59 H53 G4B sing 194 n n C59 H54 G4B sing 195 n n C60 H55 G4B sing 196 n n C61 H56 G4B sing 197 n n C61 H57 G4B sing 198 n n C61 H58 G4B sing 199 n n C62 H59 G4B sing 200 n n C62 H60 G4B sing 201 n n C62 H61 G4B sing 202 n n # _atom_sites.entry_id 6HGY _atom_sites.fract_transf_matrix[1][1] 0.021949 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.01066 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02228 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022239 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 G4B A 1 301 1 G4B INX . C 3 HOH A 1 401 19 HOH HOH . C 3 HOH A 2 402 17 HOH HOH . C 3 HOH A 3 403 16 HOH HOH . C 3 HOH A 4 404 13 HOH HOH . C 3 HOH A 5 405 4 HOH HOH . C 3 HOH A 6 406 14 HOH HOH . C 3 HOH A 7 407 3 HOH HOH . C 3 HOH A 8 408 18 HOH HOH . C 3 HOH A 9 409 1 HOH HOH . C 3 HOH A 10 410 7 HOH HOH . C 3 HOH A 11 411 6 HOH HOH . C 3 HOH A 12 412 11 HOH HOH . C 3 HOH A 13 413 8 HOH HOH . C 3 HOH A 14 414 2 HOH HOH . C 3 HOH A 15 415 5 HOH HOH . C 3 HOH A 16 416 10 HOH HOH . C 3 HOH A 17 417 15 HOH HOH . C 3 HOH A 18 418 9 HOH HOH . C 3 HOH A 19 419 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 G4B . . . B 2 5.551 -21.983 12.882 0.01 21.08 ? C1 G4B 301 A 1 HETATM 2 C C2 G4B . . . B 2 4.168 -21.378 12.785 0.01 21.4 ? C2 G4B 301 A 1 HETATM 3 C C3 G4B . . . B 2 3.571 -21.146 14.167 0.01 22.03 ? C3 G4B 301 A 1 HETATM 4 C C4 G4B . . . B 2 2.209 -20.471 14.056 0.01 22.97 ? C4 G4B 301 A 1 HETATM 5 C C5 G4B . . . B 2 1.594 -20.225 15.428 0.01 24.28 ? C5 G4B 301 A 1 HETATM 6 C C6 G4B . . . B 2 0.197 -19.637 15.283 0.01 25.97 ? C6 G4B 301 A 1 HETATM 7 C C7 G4B . . . B 2 -0.396 -19.363 16.643 0.01 28.09 ? C7 G4B 301 A 1 HETATM 8 C C8 G4B . . . B 2 -1.614 -18.839 16.737 0.01 31 ? C8 G4B 301 A 1 HETATM 9 C C15 G4B . . . B 2 -4.543 -15.22 17.693 1 46.71 ? C15 G4B 301 A 1 HETATM 10 C C16 G4B . . . B 2 -5.915 -15.173 18.342 1 58.17 ? C16 G4B 301 A 1 HETATM 11 C C17 G4B . . . B 2 -6.208 -16.014 19.434 1 61.34 ? C17 G4B 301 A 1 HETATM 12 C C18 G4B . . . B 2 -7.471 -15.967 20.046 1 65.91 ? C18 G4B 301 A 1 HETATM 13 C C19 G4B . . . B 2 -8.45 -15.075 19.579 1 72.57 ? C19 G4B 301 A 1 HETATM 14 C C21 G4B . . . B 2 -6.897 -14.276 17.884 1 62.7 ? C21 G4B 301 A 1 HETATM 15 C C23 G4B . . . B 2 -4.53 -14.212 15.234 1 35.46 ? C23 G4B 301 A 1 HETATM 16 C C30 G4B . . . B 2 -5.825 -10.607 16.023 1 24.71 ? C30 G4B 301 A 1 HETATM 17 C C31 G4B . . . B 2 -2.642 -11.764 14.085 1 25.08 ? C31 G4B 301 A 1 HETATM 18 C C34 G4B . . . B 2 -1.23 -11.95 12.033 1 23.82 ? C34 G4B 301 A 1 HETATM 19 C C36 G4B . . . B 2 -0.691 -13.36 11.765 1 23.59 ? C36 G4B 301 A 1 HETATM 20 C C38 G4B . . . B 2 -2.39 -15.316 11.625 1 30.39 ? C38 G4B 301 A 1 HETATM 21 C C40 G4B . . . B 2 -3.742 -15.633 11.012 1 31.48 ? C40 G4B 301 A 1 HETATM 22 C C9 G4B . . . B 2 -2.402 -18.52 15.487 0.01 33.89 ? C9 G4B 301 A 1 HETATM 23 C C10 G4B . . . B 2 -3.621 -17.709 15.868 0.01 37.14 ? C10 G4B 301 A 1 HETATM 24 O O11 G4B . . . B 2 -4.625 -18.315 16.215 0.01 37.64 ? O11 G4B 301 A 1 HETATM 25 N N12 G4B . . . B 2 -3.521 -16.336 15.792 1 41.45 ? N12 G4B 301 A 1 HETATM 26 C C13 G4B . . . B 2 -4.587 -15.421 16.163 1 37.97 ? C13 G4B 301 A 1 HETATM 27 C C20 G4B . . . B 2 -8.16 -14.228 18.497 1 67.06 ? C20 G4B 301 A 1 HETATM 28 O O22 G4B . . . B 2 -9.675 -15.034 20.177 1 79.2 ? O22 G4B 301 A 1 HETATM 29 O O24 G4B . . . B 2 -4.929 -14.44 14.107 1 31.06 ? O24 G4B 301 A 1 HETATM 30 N N25 G4B . . . B 2 -4.079 -12.987 15.587 1 30.69 ? N25 G4B 301 A 1 HETATM 31 C C26 G4B . . . B 2 -4.026 -11.828 14.689 1 26.02 ? C26 G4B 301 A 1 HETATM 32 C C28 G4B . . . B 2 -4.398 -10.545 15.468 1 24.42 ? C28 G4B 301 A 1 HETATM 33 C C29 G4B . . . B 2 -4.23 -9.22 14.703 1 22.35 ? C29 G4B 301 A 1 HETATM 34 O O32 G4B . . . B 2 -1.714 -11.512 14.844 1 26.8 ? O32 G4B 301 A 1 HETATM 35 N N33 G4B . . . B 2 -2.508 -11.986 12.76 1 23.64 ? N33 G4B 301 A 1 HETATM 36 O O37 G4B . . . B 2 -1.606 -14.207 11.074 1 26.79 ? O37 G4B 301 A 1 HETATM 37 O O39 G4B . . . B 2 -1.932 -15.96 12.555 1 39.38 ? O39 G4B 301 A 1 HETATM 38 C C42 G4B . . . B 2 -3.892 -17.132 10.692 1 29.52 ? C42 G4B 301 A 1 HETATM 39 C C43 G4B . . . B 2 -5.281 -17.459 10.195 1 29.64 ? C43 G4B 301 A 1 HETATM 40 C C44 G4B . . . B 2 -6.357 -17.522 11.095 1 32.08 ? C44 G4B 301 A 1 HETATM 41 C C45 G4B . . . B 2 -7.649 -17.833 10.634 1 33.72 ? C45 G4B 301 A 1 HETATM 42 C C46 G4B . . . B 2 -7.871 -18.086 9.269 1 34.92 ? C46 G4B 301 A 1 HETATM 43 C C47 G4B . . . B 2 -6.792 -18.023 8.371 1 32.23 ? C47 G4B 301 A 1 HETATM 44 C C48 G4B . . . B 2 -5.502 -17.714 8.835 1 34.13 ? C48 G4B 301 A 1 HETATM 45 O O49 G4B . . . B 2 -9.127 -18.385 8.825 1 36.27 ? O49 G4B 301 A 1 HETATM 46 N N50 G4B . . . B 2 -3.908 -14.657 9.936 1 32.64 ? N50 G4B 301 A 1 HETATM 47 C C51 G4B . . . B 2 -3.445 -14.729 8.677 1 31.87 ? C51 G4B 301 A 1 HETATM 48 O O52 G4B . . . B 2 -2.825 -15.679 8.221 1 30.16 ? O52 G4B 301 A 1 HETATM 49 C C53 G4B . . . B 2 -3.66 -13.519 7.8 1 28.98 ? C53 G4B 301 A 1 HETATM 50 N N55 G4B . . . B 2 -2.295 -13.001 7.611 1 31.64 ? N55 G4B 301 A 1 HETATM 51 C C56 G4B . . . B 2 -1.568 -12.169 8.406 1 31.1 ? C56 G4B 301 A 1 HETATM 52 O O57 G4B . . . B 2 -0.435 -11.869 8.057 1 34.18 ? O57 G4B 301 A 1 HETATM 53 C C58 G4B . . . B 2 -2.117 -11.551 9.692 1 25.14 ? C58 G4B 301 A 1 HETATM 54 C C59 G4B . . . B 2 -1.25 -11.006 10.823 1 23.29 ? C59 G4B 301 A 1 HETATM 55 C C60 G4B . . . B 2 -4.399 -13.86 6.491 1 27.65 ? C60 G4B 301 A 1 HETATM 56 C C61 G4B . . . B 2 -4.299 -12.73 5.451 1 27.18 ? C61 G4B 301 A 1 HETATM 57 C C62 G4B . . . B 2 -5.857 -14.294 6.755 1 27.24 ? C62 G4B 301 A 1 # _model_server_stats.io_time_ms 84 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 411 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 57 #