data_6HHD # _model_server_result.job_id evyY7jCRWhE_T3FaZf5Q1Q _model_server_result.datetime_utc '2024-10-10 17:20:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hhd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":303}' # _entry.id 6HHD # _exptl.entry_id 6HHD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.96 _cell.angle_gamma 90 _cell.entry_id 6HHD _cell.length_a 59.13 _cell.length_b 63.798 _cell.length_c 69.792 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HHD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 61 A CYS 179 1_555 A SG CYS 96 A CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 C SG CYS 61 C CYS 179 1_555 C SG CYS 96 C CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 D SG CYS 22 D CYS 22 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc1 O O HOH . B HOH 382 1_545 J NA NA . C NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.054 ? metalc ? metalc2 J NA NA . C NA 303 1_555 Q O HOH . D HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6HHD _atom_sites.fract_transf_matrix[1][1] 0.016912 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003582 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015674 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014646 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 CL A 1 301 1 CL CL . F 6 SO4 B 1 201 2 SO4 SO4 . G 5 CL B 1 202 1 CL CL . H 7 GOL C 1 301 1 GOL GOL . I 6 SO4 C 1 302 3 SO4 SO4 . J 8 NA C 1 303 1 NA NA . K 6 SO4 D 1 201 1 SO4 SO4 . L 6 SO4 D 1 202 4 SO4 SO4 . M 5 CL D 1 203 1 CL CL . N 9 HOH A 1 401 280 HOH HOH . N 9 HOH A 2 402 121 HOH HOH . N 9 HOH A 3 403 154 HOH HOH . N 9 HOH A 4 404 196 HOH HOH . N 9 HOH A 5 405 94 HOH HOH . N 9 HOH A 6 406 86 HOH HOH . N 9 HOH A 7 407 97 HOH HOH . N 9 HOH A 8 408 133 HOH HOH . N 9 HOH A 9 409 104 HOH HOH . N 9 HOH A 10 410 179 HOH HOH . N 9 HOH A 11 411 205 HOH HOH . N 9 HOH A 12 412 61 HOH HOH . N 9 HOH A 13 413 225 HOH HOH . N 9 HOH A 14 414 100 HOH HOH . N 9 HOH A 15 415 20 HOH HOH . N 9 HOH A 16 416 136 HOH HOH . N 9 HOH A 17 417 181 HOH HOH . N 9 HOH A 18 418 124 HOH HOH . N 9 HOH A 19 419 186 HOH HOH . N 9 HOH A 20 420 114 HOH HOH . N 9 HOH A 21 421 270 HOH HOH . N 9 HOH A 22 422 122 HOH HOH . N 9 HOH A 23 423 128 HOH HOH . N 9 HOH A 24 424 222 HOH HOH . N 9 HOH A 25 425 31 HOH HOH . N 9 HOH A 26 426 96 HOH HOH . N 9 HOH A 27 427 184 HOH HOH . N 9 HOH A 28 428 52 HOH HOH . N 9 HOH A 29 429 99 HOH HOH . N 9 HOH A 30 430 229 HOH HOH . N 9 HOH A 31 431 40 HOH HOH . N 9 HOH A 32 432 188 HOH HOH . N 9 HOH A 33 433 69 HOH HOH . N 9 HOH A 34 434 202 HOH HOH . N 9 HOH A 35 435 115 HOH HOH . N 9 HOH A 36 436 101 HOH HOH . N 9 HOH A 37 437 13 HOH HOH . N 9 HOH A 38 438 51 HOH HOH . N 9 HOH A 39 439 195 HOH HOH . N 9 HOH A 40 440 98 HOH HOH . N 9 HOH A 41 441 160 HOH HOH . N 9 HOH A 42 442 35 HOH HOH . N 9 HOH A 43 443 87 HOH HOH . N 9 HOH A 44 444 15 HOH HOH . N 9 HOH A 45 445 105 HOH HOH . N 9 HOH A 46 446 138 HOH HOH . N 9 HOH A 47 447 240 HOH HOH . N 9 HOH A 48 448 135 HOH HOH . N 9 HOH A 49 449 217 HOH HOH . N 9 HOH A 50 450 230 HOH HOH . N 9 HOH A 51 451 281 HOH HOH . N 9 HOH A 52 452 274 HOH HOH . N 9 HOH A 53 453 243 HOH HOH . N 9 HOH A 54 454 279 HOH HOH . N 9 HOH A 55 455 234 HOH HOH . N 9 HOH A 56 456 284 HOH HOH . N 9 HOH A 57 457 182 HOH HOH . N 9 HOH A 58 458 192 HOH HOH . N 9 HOH A 59 459 189 HOH HOH . N 9 HOH A 60 460 257 HOH HOH . N 9 HOH A 61 461 253 HOH HOH . N 9 HOH A 62 462 245 HOH HOH . N 9 HOH A 63 463 271 HOH HOH . O 9 HOH B 1 301 242 HOH HOH . O 9 HOH B 2 302 139 HOH HOH . O 9 HOH B 3 303 127 HOH HOH . O 9 HOH B 4 304 149 HOH HOH . O 9 HOH B 5 305 42 HOH HOH . O 9 HOH B 6 306 206 HOH HOH . O 9 HOH B 7 307 4 HOH HOH . O 9 HOH B 8 308 277 HOH HOH . O 9 HOH B 9 309 170 HOH HOH . O 9 HOH B 10 310 80 HOH HOH . O 9 HOH B 11 311 131 HOH HOH . O 9 HOH B 12 312 120 HOH HOH . O 9 HOH B 13 313 183 HOH HOH . O 9 HOH B 14 314 201 HOH HOH . O 9 HOH B 15 315 215 HOH HOH . O 9 HOH B 16 316 178 HOH HOH . O 9 HOH B 17 317 185 HOH HOH . O 9 HOH B 18 318 204 HOH HOH . O 9 HOH B 19 319 187 HOH HOH . O 9 HOH B 20 320 111 HOH HOH . O 9 HOH B 21 321 162 HOH HOH . O 9 HOH B 22 322 119 HOH HOH . O 9 HOH B 23 323 265 HOH HOH . O 9 HOH B 24 324 161 HOH HOH . O 9 HOH B 25 325 85 HOH HOH . O 9 HOH B 26 326 29 HOH HOH . O 9 HOH B 27 327 19 HOH HOH . O 9 HOH B 28 328 150 HOH HOH . O 9 HOH B 29 329 148 HOH HOH . O 9 HOH B 30 330 171 HOH HOH . O 9 HOH B 31 331 33 HOH HOH . O 9 HOH B 32 332 79 HOH HOH . O 9 HOH B 33 333 63 HOH HOH . O 9 HOH B 34 334 50 HOH HOH . O 9 HOH B 35 335 46 HOH HOH . O 9 HOH B 36 336 252 HOH HOH . O 9 HOH B 37 337 55 HOH HOH . O 9 HOH B 38 338 123 HOH HOH . O 9 HOH B 39 339 6 HOH HOH . O 9 HOH B 40 340 68 HOH HOH . O 9 HOH B 41 341 200 HOH HOH . O 9 HOH B 42 342 177 HOH HOH . O 9 HOH B 43 343 219 HOH HOH . O 9 HOH B 44 344 132 HOH HOH . O 9 HOH B 45 345 23 HOH HOH . O 9 HOH B 46 346 2 HOH HOH . O 9 HOH B 47 347 221 HOH HOH . O 9 HOH B 48 348 36 HOH HOH . O 9 HOH B 49 349 22 HOH HOH . O 9 HOH B 50 350 70 HOH HOH . O 9 HOH B 51 351 14 HOH HOH . O 9 HOH B 52 352 203 HOH HOH . O 9 HOH B 53 353 90 HOH HOH . O 9 HOH B 54 354 147 HOH HOH . O 9 HOH B 55 355 45 HOH HOH . O 9 HOH B 56 356 174 HOH HOH . O 9 HOH B 57 357 71 HOH HOH . O 9 HOH B 58 358 102 HOH HOH . O 9 HOH B 59 359 193 HOH HOH . O 9 HOH B 60 360 113 HOH HOH . O 9 HOH B 61 361 268 HOH HOH . O 9 HOH B 62 362 220 HOH HOH . O 9 HOH B 63 363 21 HOH HOH . O 9 HOH B 64 364 153 HOH HOH . O 9 HOH B 65 365 260 HOH HOH . O 9 HOH B 66 366 241 HOH HOH . O 9 HOH B 67 367 173 HOH HOH . O 9 HOH B 68 368 194 HOH HOH . O 9 HOH B 69 369 212 HOH HOH . O 9 HOH B 70 370 236 HOH HOH . O 9 HOH B 71 371 146 HOH HOH . O 9 HOH B 72 372 246 HOH HOH . O 9 HOH B 73 373 283 HOH HOH . O 9 HOH B 74 374 26 HOH HOH . O 9 HOH B 75 375 224 HOH HOH . O 9 HOH B 76 376 151 HOH HOH . O 9 HOH B 77 377 261 HOH HOH . O 9 HOH B 78 378 266 HOH HOH . O 9 HOH B 79 379 258 HOH HOH . O 9 HOH B 80 380 231 HOH HOH . O 9 HOH B 81 381 237 HOH HOH . O 9 HOH B 82 382 144 HOH HOH . O 9 HOH B 83 383 256 HOH HOH . O 9 HOH B 84 384 198 HOH HOH . O 9 HOH B 85 385 157 HOH HOH . O 9 HOH B 86 386 116 HOH HOH . O 9 HOH B 87 387 167 HOH HOH . O 9 HOH B 88 388 208 HOH HOH . O 9 HOH B 89 389 255 HOH HOH . O 9 HOH B 90 390 264 HOH HOH . O 9 HOH B 91 391 250 HOH HOH . O 9 HOH B 92 392 248 HOH HOH . P 9 HOH C 1 401 276 HOH HOH . P 9 HOH C 2 402 126 HOH HOH . P 9 HOH C 3 403 28 HOH HOH . P 9 HOH C 4 404 169 HOH HOH . P 9 HOH C 5 405 72 HOH HOH . P 9 HOH C 6 406 269 HOH HOH . P 9 HOH C 7 407 74 HOH HOH . P 9 HOH C 8 408 62 HOH HOH . P 9 HOH C 9 409 137 HOH HOH . P 9 HOH C 10 410 228 HOH HOH . P 9 HOH C 11 411 64 HOH HOH . P 9 HOH C 12 412 155 HOH HOH . P 9 HOH C 13 413 3 HOH HOH . P 9 HOH C 14 414 108 HOH HOH . P 9 HOH C 15 415 232 HOH HOH . P 9 HOH C 16 416 59 HOH HOH . P 9 HOH C 17 417 112 HOH HOH . P 9 HOH C 18 418 275 HOH HOH . P 9 HOH C 19 419 47 HOH HOH . P 9 HOH C 20 420 5 HOH HOH . P 9 HOH C 21 421 73 HOH HOH . P 9 HOH C 22 422 11 HOH HOH . P 9 HOH C 23 423 38 HOH HOH . P 9 HOH C 24 424 53 HOH HOH . P 9 HOH C 25 425 49 HOH HOH . P 9 HOH C 26 426 48 HOH HOH . P 9 HOH C 27 427 199 HOH HOH . P 9 HOH C 28 428 158 HOH HOH . P 9 HOH C 29 429 216 HOH HOH . P 9 HOH C 30 430 142 HOH HOH . P 9 HOH C 31 431 57 HOH HOH . P 9 HOH C 32 432 164 HOH HOH . P 9 HOH C 33 433 251 HOH HOH . P 9 HOH C 34 434 244 HOH HOH . P 9 HOH C 35 435 223 HOH HOH . Q 9 HOH D 1 301 175 HOH HOH . Q 9 HOH D 2 302 109 HOH HOH . Q 9 HOH D 3 303 88 HOH HOH . Q 9 HOH D 4 304 239 HOH HOH . Q 9 HOH D 5 305 54 HOH HOH . Q 9 HOH D 6 306 125 HOH HOH . Q 9 HOH D 7 307 32 HOH HOH . Q 9 HOH D 8 308 84 HOH HOH . Q 9 HOH D 9 309 43 HOH HOH . Q 9 HOH D 10 310 117 HOH HOH . Q 9 HOH D 11 311 37 HOH HOH . Q 9 HOH D 12 312 282 HOH HOH . Q 9 HOH D 13 313 75 HOH HOH . Q 9 HOH D 14 314 211 HOH HOH . Q 9 HOH D 15 315 226 HOH HOH . Q 9 HOH D 16 316 82 HOH HOH . Q 9 HOH D 17 317 278 HOH HOH . Q 9 HOH D 18 318 34 HOH HOH . Q 9 HOH D 19 319 141 HOH HOH . Q 9 HOH D 20 320 207 HOH HOH . Q 9 HOH D 21 321 249 HOH HOH . Q 9 HOH D 22 322 8 HOH HOH . Q 9 HOH D 23 323 66 HOH HOH . Q 9 HOH D 24 324 247 HOH HOH . Q 9 HOH D 25 325 12 HOH HOH . Q 9 HOH D 26 326 218 HOH HOH . Q 9 HOH D 27 327 214 HOH HOH . Q 9 HOH D 28 328 156 HOH HOH . Q 9 HOH D 29 329 209 HOH HOH . Q 9 HOH D 30 330 1 HOH HOH . Q 9 HOH D 31 331 39 HOH HOH . Q 9 HOH D 32 332 9 HOH HOH . Q 9 HOH D 33 333 92 HOH HOH . Q 9 HOH D 34 334 168 HOH HOH . Q 9 HOH D 35 335 238 HOH HOH . Q 9 HOH D 36 336 25 HOH HOH . Q 9 HOH D 37 337 58 HOH HOH . Q 9 HOH D 38 338 56 HOH HOH . Q 9 HOH D 39 339 16 HOH HOH . Q 9 HOH D 40 340 60 HOH HOH . Q 9 HOH D 41 341 27 HOH HOH . Q 9 HOH D 42 342 110 HOH HOH . Q 9 HOH D 43 343 272 HOH HOH . Q 9 HOH D 44 344 233 HOH HOH . Q 9 HOH D 45 345 10 HOH HOH . Q 9 HOH D 46 346 44 HOH HOH . Q 9 HOH D 47 347 262 HOH HOH . Q 9 HOH D 48 348 95 HOH HOH . Q 9 HOH D 49 349 134 HOH HOH . Q 9 HOH D 50 350 7 HOH HOH . Q 9 HOH D 51 351 41 HOH HOH . Q 9 HOH D 52 352 89 HOH HOH . Q 9 HOH D 53 353 24 HOH HOH . Q 9 HOH D 54 354 143 HOH HOH . Q 9 HOH D 55 355 172 HOH HOH . Q 9 HOH D 56 356 106 HOH HOH . Q 9 HOH D 57 357 152 HOH HOH . Q 9 HOH D 58 358 263 HOH HOH . Q 9 HOH D 59 359 81 HOH HOH . Q 9 HOH D 60 360 180 HOH HOH . Q 9 HOH D 61 361 103 HOH HOH . Q 9 HOH D 62 362 78 HOH HOH . Q 9 HOH D 63 363 18 HOH HOH . Q 9 HOH D 64 364 67 HOH HOH . Q 9 HOH D 65 365 129 HOH HOH . Q 9 HOH D 66 366 77 HOH HOH . Q 9 HOH D 67 367 210 HOH HOH . Q 9 HOH D 68 368 65 HOH HOH . Q 9 HOH D 69 369 191 HOH HOH . Q 9 HOH D 70 370 166 HOH HOH . Q 9 HOH D 71 371 273 HOH HOH . Q 9 HOH D 72 372 235 HOH HOH . Q 9 HOH D 73 373 30 HOH HOH . Q 9 HOH D 74 374 76 HOH HOH . Q 9 HOH D 75 375 130 HOH HOH . Q 9 HOH D 76 376 140 HOH HOH . Q 9 HOH D 77 377 17 HOH HOH . Q 9 HOH D 78 378 145 HOH HOH . Q 9 HOH D 79 379 83 HOH HOH . Q 9 HOH D 80 380 159 HOH HOH . Q 9 HOH D 81 381 213 HOH HOH . Q 9 HOH D 82 382 93 HOH HOH . Q 9 HOH D 83 383 163 HOH HOH . Q 9 HOH D 84 384 190 HOH HOH . Q 9 HOH D 85 385 107 HOH HOH . Q 9 HOH D 86 386 165 HOH HOH . Q 9 HOH D 87 387 118 HOH HOH . Q 9 HOH D 88 388 285 HOH HOH . Q 9 HOH D 89 389 197 HOH HOH . Q 9 HOH D 90 390 91 HOH HOH . Q 9 HOH D 91 391 227 HOH HOH . Q 9 HOH D 92 392 254 HOH HOH . Q 9 HOH D 93 393 176 HOH HOH . Q 9 HOH D 94 394 267 HOH HOH . Q 9 HOH D 95 395 259 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 8 _atom_site.Cartn_x -22.102 _atom_site.Cartn_y -51.6 _atom_site.Cartn_z -20.75 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 303 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #