data_6HHH # _model_server_result.job_id 9VPrfM_Ot4MDMM4NBnZcQg _model_server_result.datetime_utc '2024-11-24 10:36:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hhh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6HHH # _exptl.entry_id 6HHH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 543.658 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[4-[4-[[4-(5-oxidanylidene-3-phenyl-6~{H}-1,6-naphthyridin-2-yl)phenyl]methyl]piperazin-1-yl]phenyl]propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HHH _cell.length_a 70.32 _cell.length_b 70.89 _cell.length_c 91.08 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HHH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 60 A CYS 60 1_555 A SG CYS 77 A CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? covale ? covale1 A SG CYS 296 A CYS 296 1_555 B CBN G4Q . A G4Q 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? # _chem_comp.formula 'C34 H33 N5 O2' _chem_comp.formula_weight 543.658 _chem_comp.id G4Q _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[4-[4-[[4-(5-oxidanylidene-3-phenyl-6~{H}-1,6-naphthyridin-2-yl)phenyl]methyl]piperazin-1-yl]phenyl]propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OBO CAC G4Q doub 83 n n CAC NAB G4Q sing 84 n n CAC CAD G4Q sing 85 n n NAB CAA G4Q sing 86 n n CAA CAF G4Q doub 87 n n CAP CAO G4Q doub 88 n y CAP CAK G4Q sing 89 n y CAD CAG G4Q doub 90 n y CAD CAE G4Q sing 91 n y CAO CAN G4Q sing 92 n y CAG CAH G4Q sing 93 n y CAF CAE G4Q sing 94 n n CAE NAJ G4Q doub 95 n y CAH CAK G4Q sing 96 n n CAH CAI G4Q doub 97 n y CAK CAL G4Q doub 98 n y CAN CAM G4Q doub 99 n y NAJ CAI G4Q sing 100 n y CAI CAQ G4Q sing 101 n n CAL CAM G4Q sing 102 n y CAR CAQ G4Q doub 103 n y CAR CAS G4Q sing 104 n y CAQ CAV G4Q sing 105 n y CAS CAT G4Q doub 106 n y CAV CAU G4Q doub 107 n y CAT CAU G4Q sing 108 n y CAT CAW G4Q sing 109 n n CAY CAZ G4Q sing 110 n n CAY NAX G4Q sing 111 n n CAW NAX G4Q sing 112 n n CAZ NBA G4Q sing 113 n n NAX CBC G4Q sing 114 n n CBE CBF G4Q doub 115 n y CBE CBD G4Q sing 116 n y CBC CBB G4Q sing 117 n n NBA CBD G4Q sing 118 n n NBA CBB G4Q sing 119 n n CBF CBG G4Q sing 120 n y CBD CBI G4Q doub 121 n y CBG NBJ G4Q sing 122 n n CBG CBH G4Q doub 123 n y CBI CBH G4Q sing 124 n y OBM CBK G4Q doub 125 n n NBJ CBK G4Q sing 126 n n CBK CBL G4Q sing 127 n n CBN CBL G4Q sing 128 n n CAL H1 G4Q sing 129 n n CAM H2 G4Q sing 130 n n CAN H3 G4Q sing 131 n n CAO H4 G4Q sing 132 n n CAP H5 G4Q sing 133 n n CAG H6 G4Q sing 134 n n CAA H7 G4Q sing 135 n n CAF H8 G4Q sing 136 n n CAV H10 G4Q sing 137 n n CAU H11 G4Q sing 138 n n CAR H12 G4Q sing 139 n n CAS H13 G4Q sing 140 n n CAW H14 G4Q sing 141 n n CAW H15 G4Q sing 142 n n CBC H17 G4Q sing 143 n n CBC H18 G4Q sing 144 n n CBB H19 G4Q sing 145 n n CBB H20 G4Q sing 146 n n CAY H21 G4Q sing 147 n n CAY H22 G4Q sing 148 n n CAZ H23 G4Q sing 149 n n CAZ H24 G4Q sing 150 n n CBI H25 G4Q sing 151 n n CBH H26 G4Q sing 152 n n CBE H27 G4Q sing 153 n n CBF H28 G4Q sing 154 n n NBJ H29 G4Q sing 155 n n CBL H30 G4Q sing 156 n n CBL H31 G4Q sing 157 n n CBN H32 G4Q sing 158 n n CBN H33 G4Q sing 159 n n CBN H34 G4Q sing 160 n n NAB H35 G4Q sing 161 n n # _atom_sites.entry_id 6HHH _atom_sites.fract_transf_matrix[1][1] 0.014221 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014106 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010979 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 G4Q A 1 501 1 G4Q DRG . C 3 HOH A 1 601 62 HOH HOH . C 3 HOH A 2 602 33 HOH HOH . C 3 HOH A 3 603 30 HOH HOH . C 3 HOH A 4 604 7 HOH HOH . C 3 HOH A 5 605 61 HOH HOH . C 3 HOH A 6 606 29 HOH HOH . C 3 HOH A 7 607 35 HOH HOH . C 3 HOH A 8 608 4 HOH HOH . C 3 HOH A 9 609 58 HOH HOH . C 3 HOH A 10 610 57 HOH HOH . C 3 HOH A 11 611 18 HOH HOH . C 3 HOH A 12 612 54 HOH HOH . C 3 HOH A 13 613 27 HOH HOH . C 3 HOH A 14 614 48 HOH HOH . C 3 HOH A 15 615 13 HOH HOH . C 3 HOH A 16 616 66 HOH HOH . C 3 HOH A 17 617 59 HOH HOH . C 3 HOH A 18 618 45 HOH HOH . C 3 HOH A 19 619 47 HOH HOH . C 3 HOH A 20 620 36 HOH HOH . C 3 HOH A 21 621 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAL G4Q . . . B 2 -6.27 0.841 -14.033 1 33.22 ? CAL G4Q 501 A 1 HETATM 2 C CAM G4Q . . . B 2 -7.593 1.246 -14 1 38.54 ? CAM G4Q 501 A 1 HETATM 3 C CAN G4Q . . . B 2 -8.145 1.921 -15.087 1 39.59 ? CAN G4Q 501 A 1 HETATM 4 C CAO G4Q . . . B 2 -7.371 2.189 -16.205 1 32.1 ? CAO G4Q 501 A 1 HETATM 5 C CAP G4Q . . . B 2 -6.04 1.776 -16.239 1 38.37 ? CAP G4Q 501 A 1 HETATM 6 C CAK G4Q . . . B 2 -5.483 1.112 -15.152 1 41.16 ? CAK G4Q 501 A 1 HETATM 7 C CAH G4Q . . . B 2 -4.138 0.72 -15.171 1 45.4 ? CAH G4Q 501 A 1 HETATM 8 C CAG G4Q . . . B 2 -3.712 -0.119 -16.199 1 40.67 ? CAG G4Q 501 A 1 HETATM 9 C CAD G4Q . . . B 2 -2.383 -0.522 -16.215 1 53.71 ? CAD G4Q 501 A 1 HETATM 10 C CAC G4Q . . . B 2 -1.909 -1.357 -17.221 1 53.2 ? CAC G4Q 501 A 1 HETATM 11 O OBO G4Q . . . B 2 -2.651 -1.763 -18.115 1 57.13 ? OBO G4Q 501 A 1 HETATM 12 N NAB G4Q . . . B 2 -0.565 -1.745 -17.214 1 49.71 ? NAB G4Q 501 A 1 HETATM 13 C CAA G4Q . . . B 2 0.257 -1.327 -16.266 1 51.1 ? CAA G4Q 501 A 1 HETATM 14 C CAF G4Q . . . B 2 -0.184 -0.493 -15.25 1 46.41 ? CAF G4Q 501 A 1 HETATM 15 C CAE G4Q . . . B 2 -1.514 -0.087 -15.219 1 51.63 ? CAE G4Q 501 A 1 HETATM 16 N NAJ G4Q . . . B 2 -1.941 0.726 -14.239 1 46 ? NAJ G4Q 501 A 1 HETATM 17 C CAI G4Q . . . B 2 -3.209 1.154 -14.189 1 41.38 ? CAI G4Q 501 A 1 HETATM 18 C CAQ G4Q . . . B 2 -3.571 1.987 -13.123 1 39.09 ? CAQ G4Q 501 A 1 HETATM 19 C CAV G4Q . . . B 2 -3.251 1.626 -11.816 1 39.48 ? CAV G4Q 501 A 1 HETATM 20 C CAU G4Q . . . B 2 -3.635 2.438 -10.747 1 42.36 ? CAU G4Q 501 A 1 HETATM 21 C CAR G4Q . . . B 2 -4.264 3.18 -13.342 1 42.42 ? CAR G4Q 501 A 1 HETATM 22 C CAS G4Q . . . B 2 -4.655 3.982 -12.283 1 51.55 ? CAS G4Q 501 A 1 HETATM 23 C CAT G4Q . . . B 2 -4.33 3.621 -10.986 1 48.52 ? CAT G4Q 501 A 1 HETATM 24 C CAW G4Q . . . B 2 -4.744 4.448 -9.953 1 58.02 ? CAW G4Q 501 A 1 HETATM 25 N NAX G4Q . . . B 2 -3.655 4.969 -9.139 1 58.03 ? NAX G4Q 501 A 1 HETATM 26 C CBC G4Q . . . B 2 -4.309 5.702 -8.047 1 57.54 ? CBC G4Q 501 A 1 HETATM 27 C CBB G4Q . . . B 2 -3.296 6.296 -7.098 1 59.82 ? CBB G4Q 501 A 1 HETATM 28 C CAY G4Q . . . B 2 -2.917 5.935 -9.961 1 45.03 ? CAY G4Q 501 A 1 HETATM 29 C CAZ G4Q . . . B 2 -1.789 6.568 -9.165 1 54.32 ? CAZ G4Q 501 A 1 HETATM 30 N NBA G4Q . . . B 2 -2.251 7.044 -7.835 1 64.7 ? NBA G4Q 501 A 1 HETATM 31 C CBD G4Q . . . B 2 -1.713 8.146 -7.284 1 71.91 ? CBD G4Q 501 A 1 HETATM 32 C CBI G4Q . . . B 2 -1.843 8.384 -5.92 1 74.01 ? CBI G4Q 501 A 1 HETATM 33 C CBH G4Q . . . B 2 -1.284 9.53 -5.354 1 77.04 ? CBH G4Q 501 A 1 HETATM 34 C CBE G4Q . . . B 2 -1.024 9.058 -8.07 1 77.91 ? CBE G4Q 501 A 1 HETATM 35 C CBF G4Q . . . B 2 -0.468 10.2 -7.503 1 86.51 ? CBF G4Q 501 A 1 HETATM 36 C CBG G4Q . . . B 2 -0.582 10.441 -6.136 1 79.56 ? CBG G4Q 501 A 1 HETATM 37 N NBJ G4Q . . . B 2 -0.05 11.556 -5.616 1 75.38 ? NBJ G4Q 501 A 1 HETATM 38 C CBK G4Q . . . B 2 1.283 11.644 -5.409 1 67.64 ? CBK G4Q 501 A 1 HETATM 39 O OBM G4Q . . . B 2 2.094 10.743 -5.638 1 67.37 ? OBM G4Q 501 A 1 HETATM 40 C CBL G4Q . . . B 2 1.755 13.015 -4.88 1 56.83 ? CBL G4Q 501 A 1 HETATM 41 C CBN G4Q . . . B 2 0.766 14.176 -5.091 1 37.31 ? CBN G4Q 501 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 41 #