data_6HHV
#
_model_server_result.job_id            GF8DwC6YEuJmmc72eP2VMw 
_model_server_result.datetime_utc      '2024-11-28 07:36:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hhv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    6HHV 
#
_exptl.entry_id    6HHV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              452.394 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-O-(N-(L-aspartyl)-sulfamoyl)N3-methyluridine" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.38 
_cell.angle_gamma         90 
_cell.entry_id            6HHV 
_cell.length_a            82.218 
_cell.length_b            112.826 
_cell.length_c            88.533 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HHV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C14 H20 N4 O11 S' 
_chem_comp.formula_weight    452.394 
_chem_comp.id                G5Q 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-O-(N-(L-aspartyl)-sulfamoyl)N3-methyluridine" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OD2 CG G5Q doub 83 n n 
CG OD1 G5Q sing 84 n n 
CG CD G5Q sing 85 n n 
CD CA G5Q sing 86 n n 
O3' C3' G5Q sing 87 n n 
O2' C2' G5Q sing 88 n n 
C4' C5' G5Q sing 89 n n 
C4' C3' G5Q sing 90 n n 
C4' O4' G5Q sing 91 n n 
C5' O5' G5Q sing 92 n n 
CA N G5Q sing 93 n n 
CA C G5Q sing 94 n n 
C3' C2' G5Q sing 95 n n 
O4' C1' G5Q sing 96 n n 
C2' C1' G5Q sing 97 n n 
C N3S G5Q sing 98 n n 
C O G5Q doub 99 n n 
C1' N1 G5Q sing 100 n n 
N3S S G5Q sing 101 n n 
O5' S G5Q sing 102 n n 
O1S S G5Q doub 103 n n 
O2 C2 G5Q doub 104 n n 
S O2S G5Q doub 105 n n 
N1 C2 G5Q sing 106 n n 
N1 C6 G5Q sing 107 n n 
C2 N3 G5Q sing 108 n n 
C6 C5 G5Q doub 109 n n 
N3 C3U G5Q sing 110 n n 
N3 C4 G5Q sing 111 n n 
C5 C4 G5Q sing 112 n n 
C4 O4 G5Q doub 113 n n 
N H1 G5Q sing 114 n n 
N H2 G5Q sing 115 n n 
CA H4 G5Q sing 116 n n 
CD H5 G5Q sing 117 n n 
CD H6 G5Q sing 118 n n 
OD1 H7 G5Q sing 119 n n 
C1' H8 G5Q sing 120 n n 
C2' H9 G5Q sing 121 n n 
C3' H10 G5Q sing 122 n n 
C3U H11 G5Q sing 123 n n 
C3U H12 G5Q sing 124 n n 
C3U H13 G5Q sing 125 n n 
C4' H14 G5Q sing 126 n n 
C5 H15 G5Q sing 127 n n 
C5' H16 G5Q sing 128 n n 
C5' H17 G5Q sing 129 n n 
C6 H18 G5Q sing 130 n n 
N3S H19 G5Q sing 131 n n 
O2' H20 G5Q sing 132 n n 
O3' H21 G5Q sing 133 n n 
#
_atom_sites.entry_id                     6HHV 
_atom_sites.fract_transf_matrix[1][1]    0.012163 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003119 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008863 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011661 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 G5Q A 1 601 1 G5Q D3U . 
D 2 G5Q B 1 601 2 G5Q D3U . 
E 3 HOH A 1 701 100 HOH HOH . 
E 3 HOH A 2 702 171 HOH HOH . 
E 3 HOH A 3 703 64 HOH HOH . 
E 3 HOH A 4 704 155 HOH HOH . 
E 3 HOH A 5 705 11 HOH HOH . 
E 3 HOH A 6 706 15 HOH HOH . 
E 3 HOH A 7 707 37 HOH HOH . 
E 3 HOH A 8 708 48 HOH HOH . 
E 3 HOH A 9 709 16 HOH HOH . 
E 3 HOH A 10 710 135 HOH HOH . 
E 3 HOH A 11 711 102 HOH HOH . 
E 3 HOH A 12 712 9 HOH HOH . 
E 3 HOH A 13 713 6 HOH HOH . 
E 3 HOH A 14 714 22 HOH HOH . 
E 3 HOH A 15 715 53 HOH HOH . 
E 3 HOH A 16 716 123 HOH HOH . 
E 3 HOH A 17 717 52 HOH HOH . 
E 3 HOH A 18 718 69 HOH HOH . 
E 3 HOH A 19 719 34 HOH HOH . 
E 3 HOH A 20 720 63 HOH HOH . 
E 3 HOH A 21 721 75 HOH HOH . 
E 3 HOH A 22 722 85 HOH HOH . 
E 3 HOH A 23 723 60 HOH HOH . 
E 3 HOH A 24 724 140 HOH HOH . 
E 3 HOH A 25 725 170 HOH HOH . 
E 3 HOH A 26 726 111 HOH HOH . 
E 3 HOH A 27 727 19 HOH HOH . 
E 3 HOH A 28 728 114 HOH HOH . 
E 3 HOH A 29 729 1 HOH HOH . 
E 3 HOH A 30 730 54 HOH HOH . 
E 3 HOH A 31 731 21 HOH HOH . 
E 3 HOH A 32 732 12 HOH HOH . 
E 3 HOH A 33 733 55 HOH HOH . 
E 3 HOH A 34 734 26 HOH HOH . 
E 3 HOH A 35 735 106 HOH HOH . 
E 3 HOH A 36 736 18 HOH HOH . 
E 3 HOH A 37 737 131 HOH HOH . 
E 3 HOH A 38 738 40 HOH HOH . 
E 3 HOH A 39 739 20 HOH HOH . 
E 3 HOH A 40 740 28 HOH HOH . 
E 3 HOH A 41 741 107 HOH HOH . 
E 3 HOH A 42 742 72 HOH HOH . 
E 3 HOH A 43 743 41 HOH HOH . 
E 3 HOH A 44 744 44 HOH HOH . 
E 3 HOH A 45 745 5 HOH HOH . 
E 3 HOH A 46 746 133 HOH HOH . 
E 3 HOH A 47 747 43 HOH HOH . 
E 3 HOH A 48 748 33 HOH HOH . 
E 3 HOH A 49 749 4 HOH HOH . 
E 3 HOH A 50 750 105 HOH HOH . 
E 3 HOH A 51 751 62 HOH HOH . 
E 3 HOH A 52 752 141 HOH HOH . 
E 3 HOH A 53 753 143 HOH HOH . 
E 3 HOH A 54 754 29 HOH HOH . 
E 3 HOH A 55 755 58 HOH HOH . 
E 3 HOH A 56 756 47 HOH HOH . 
E 3 HOH A 57 757 87 HOH HOH . 
E 3 HOH A 58 758 97 HOH HOH . 
E 3 HOH A 59 759 17 HOH HOH . 
E 3 HOH A 60 760 31 HOH HOH . 
E 3 HOH A 61 761 68 HOH HOH . 
E 3 HOH A 62 762 122 HOH HOH . 
E 3 HOH A 63 763 109 HOH HOH . 
E 3 HOH A 64 764 77 HOH HOH . 
E 3 HOH A 65 765 96 HOH HOH . 
E 3 HOH A 66 766 73 HOH HOH . 
E 3 HOH A 67 767 150 HOH HOH . 
E 3 HOH A 68 768 110 HOH HOH . 
E 3 HOH A 69 769 112 HOH HOH . 
E 3 HOH A 70 770 61 HOH HOH . 
E 3 HOH A 71 771 124 HOH HOH . 
E 3 HOH A 72 772 154 HOH HOH . 
E 3 HOH A 73 773 147 HOH HOH . 
E 3 HOH A 74 774 74 HOH HOH . 
E 3 HOH A 75 775 172 HOH HOH . 
E 3 HOH A 76 776 113 HOH HOH . 
E 3 HOH A 77 777 152 HOH HOH . 
E 3 HOH A 78 778 90 HOH HOH . 
E 3 HOH A 79 779 23 HOH HOH . 
E 3 HOH A 80 780 115 HOH HOH . 
E 3 HOH A 81 781 79 HOH HOH . 
E 3 HOH A 82 782 153 HOH HOH . 
E 3 HOH A 83 783 84 HOH HOH . 
E 3 HOH A 84 784 129 HOH HOH . 
E 3 HOH A 85 785 169 HOH HOH . 
E 3 HOH A 86 786 160 HOH HOH . 
E 3 HOH A 87 787 80 HOH HOH . 
E 3 HOH A 88 788 39 HOH HOH . 
E 3 HOH A 89 789 136 HOH HOH . 
E 3 HOH A 90 790 134 HOH HOH . 
E 3 HOH A 91 791 165 HOH HOH . 
F 3 HOH B 1 701 174 HOH HOH . 
F 3 HOH B 2 702 56 HOH HOH . 
F 3 HOH B 3 703 162 HOH HOH . 
F 3 HOH B 4 704 76 HOH HOH . 
F 3 HOH B 5 705 30 HOH HOH . 
F 3 HOH B 6 706 101 HOH HOH . 
F 3 HOH B 7 707 50 HOH HOH . 
F 3 HOH B 8 708 38 HOH HOH . 
F 3 HOH B 9 709 103 HOH HOH . 
F 3 HOH B 10 710 46 HOH HOH . 
F 3 HOH B 11 711 25 HOH HOH . 
F 3 HOH B 12 712 36 HOH HOH . 
F 3 HOH B 13 713 49 HOH HOH . 
F 3 HOH B 14 714 125 HOH HOH . 
F 3 HOH B 15 715 145 HOH HOH . 
F 3 HOH B 16 716 42 HOH HOH . 
F 3 HOH B 17 717 78 HOH HOH . 
F 3 HOH B 18 718 24 HOH HOH . 
F 3 HOH B 19 719 120 HOH HOH . 
F 3 HOH B 20 720 10 HOH HOH . 
F 3 HOH B 21 721 7 HOH HOH . 
F 3 HOH B 22 722 128 HOH HOH . 
F 3 HOH B 23 723 14 HOH HOH . 
F 3 HOH B 24 724 67 HOH HOH . 
F 3 HOH B 25 725 66 HOH HOH . 
F 3 HOH B 26 726 175 HOH HOH . 
F 3 HOH B 27 727 92 HOH HOH . 
F 3 HOH B 28 728 51 HOH HOH . 
F 3 HOH B 29 729 137 HOH HOH . 
F 3 HOH B 30 730 32 HOH HOH . 
F 3 HOH B 31 731 65 HOH HOH . 
F 3 HOH B 32 732 146 HOH HOH . 
F 3 HOH B 33 733 176 HOH HOH . 
F 3 HOH B 34 734 35 HOH HOH . 
F 3 HOH B 35 735 117 HOH HOH . 
F 3 HOH B 36 736 91 HOH HOH . 
F 3 HOH B 37 737 27 HOH HOH . 
F 3 HOH B 38 738 98 HOH HOH . 
F 3 HOH B 39 739 121 HOH HOH . 
F 3 HOH B 40 740 157 HOH HOH . 
F 3 HOH B 41 741 88 HOH HOH . 
F 3 HOH B 42 742 118 HOH HOH . 
F 3 HOH B 43 743 3 HOH HOH . 
F 3 HOH B 44 744 70 HOH HOH . 
F 3 HOH B 45 745 159 HOH HOH . 
F 3 HOH B 46 746 94 HOH HOH . 
F 3 HOH B 47 747 108 HOH HOH . 
F 3 HOH B 48 748 8 HOH HOH . 
F 3 HOH B 49 749 57 HOH HOH . 
F 3 HOH B 50 750 148 HOH HOH . 
F 3 HOH B 51 751 59 HOH HOH . 
F 3 HOH B 52 752 89 HOH HOH . 
F 3 HOH B 53 753 86 HOH HOH . 
F 3 HOH B 54 754 93 HOH HOH . 
F 3 HOH B 55 755 130 HOH HOH . 
F 3 HOH B 56 756 126 HOH HOH . 
F 3 HOH B 57 757 116 HOH HOH . 
F 3 HOH B 58 758 83 HOH HOH . 
F 3 HOH B 59 759 119 HOH HOH . 
F 3 HOH B 60 760 71 HOH HOH . 
F 3 HOH B 61 761 138 HOH HOH . 
F 3 HOH B 62 762 173 HOH HOH . 
F 3 HOH B 63 763 158 HOH HOH . 
F 3 HOH B 64 764 99 HOH HOH . 
F 3 HOH B 65 765 95 HOH HOH . 
F 3 HOH B 66 766 127 HOH HOH . 
F 3 HOH B 67 767 144 HOH HOH . 
F 3 HOH B 68 768 166 HOH HOH . 
F 3 HOH B 69 769 151 HOH HOH . 
F 3 HOH B 70 770 139 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N G5Q . . . D 2 -49.107 -14.447 -11.876 1 49.23 ? N G5Q 601 B 1 
HETATM 2 C CA G5Q . . . D 2 -49.777 -15.503 -12.654 1 52.04 ? CA G5Q 601 B 1 
HETATM 3 C C G5Q . . . D 2 -48.853 -16.721 -12.503 1 56.74 ? C G5Q 601 B 1 
HETATM 4 O O G5Q . . . D 2 -47.666 -16.7 -12.183 1 45.13 ? O G5Q 601 B 1 
HETATM 5 C CG G5Q . . . D 2 -51.194 -14.388 -14.459 1 58.25 ? CG G5Q 601 B 1 
HETATM 6 C CD G5Q . . . D 2 -49.962 -15.234 -14.151 1 51.23 ? CD G5Q 601 B 1 
HETATM 7 O OD1 G5Q . . . D 2 -52.232 -14.59 -13.787 1 47.75 ? OD1 G5Q 601 B 1 
HETATM 8 O OD2 G5Q . . . D 2 -51.089 -13.535 -15.377 1 47.4 ? OD2 G5Q 601 B 1 
HETATM 9 C C1' G5Q . . . D 2 -45.251 -21.623 -15.636 1 47.4 ? C1' G5Q 601 B 1 
HETATM 10 C C2 G5Q . . . D 2 -43.328 -22.772 -14.697 1 56.3 ? C2 G5Q 601 B 1 
HETATM 11 C C2' G5Q . . . D 2 -46.441 -22.487 -16.088 1 40.86 ? C2' G5Q 601 B 1 
HETATM 12 C C3' G5Q . . . D 2 -47.648 -21.638 -15.675 1 43.74 ? C3' G5Q 601 B 1 
HETATM 13 C C3U G5Q . . . D 2 -41.388 -23.933 -13.79 1 53.93 ? C3U G5Q 601 B 1 
HETATM 14 C C4 G5Q . . . D 2 -43.171 -23.187 -12.266 1 45.72 ? C4 G5Q 601 B 1 
HETATM 15 C C4' G5Q . . . D 2 -47.105 -20.22 -15.775 1 49.82 ? C4' G5Q 601 B 1 
HETATM 16 C C5 G5Q . . . D 2 -44.445 -22.557 -12.128 1 49.78 ? C5 G5Q 601 B 1 
HETATM 17 C C5' G5Q . . . D 2 -47.835 -19.189 -14.952 1 56.4 ? C5' G5Q 601 B 1 
HETATM 18 C C6 G5Q . . . D 2 -45.086 -22.073 -13.203 1 48.62 ? C6 G5Q 601 B 1 
HETATM 19 N N1 G5Q . . . D 2 -44.545 -22.169 -14.463 1 52.82 ? N1 G5Q 601 B 1 
HETATM 20 N N3 G5Q . . . D 2 -42.676 -23.269 -13.574 1 49.57 ? N3 G5Q 601 B 1 
HETATM 21 N N3S G5Q . . . D 2 -49.452 -17.982 -12.764 1 55.16 ? N3S G5Q 601 B 1 
HETATM 22 O O1S G5Q . . . D 2 -49.673 -20.411 -12.933 1 55.1 ? O1S G5Q 601 B 1 
HETATM 23 O O2 G5Q . . . D 2 -42.841 -22.877 -15.811 1 58.28 ? O2 G5Q 601 B 1 
HETATM 24 O O2' G5Q . . . D 2 -46.385 -22.723 -17.491 1 54.53 ? O2' G5Q 601 B 1 
HETATM 25 O O2S G5Q . . . D 2 -48.143 -19.445 -11.243 1 47.63 ? O2S G5Q 601 B 1 
HETATM 26 O O3' G5Q . . . D 2 -48.758 -21.825 -16.544 1 55.25 ? O3' G5Q 601 B 1 
HETATM 27 O O4 G5Q . . . D 2 -42.502 -23.624 -11.335 1 56 ? O4 G5Q 601 B 1 
HETATM 28 O O4' G5Q . . . D 2 -45.747 -20.333 -15.31 1 47.47 ? O4' G5Q 601 B 1 
HETATM 29 O O5' G5Q . . . D 2 -47.552 -19.477 -13.557 1 54.15 ? O5' G5Q 601 B 1 
HETATM 30 S S G5Q . . . D 2 -48.762 -19.401 -12.521 1 56.9 ? S G5Q 601 B 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           30 
#