data_6HHW # _model_server_result.job_id kvp6FYyHp0V94w_6Yuj4Zg _model_server_result.datetime_utc '2024-11-28 07:49:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hhw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 6HHW # _exptl.entry_id 6HHW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 438.367 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-(N-(L-aspartyl)-sulfamoyl)uridine" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.92 _cell.angle_gamma 90 _cell.entry_id 6HHW _cell.length_a 81.755 _cell.length_b 112.887 _cell.length_c 87.529 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HHW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C13 H18 N4 O11 S' _chem_comp.formula_weight 438.367 _chem_comp.id G5H _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-(N-(L-aspartyl)-sulfamoyl)uridine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OD1 CG G5H doub 83 n n CG OD2 G5H sing 84 n n CG CB G5H sing 85 n n CB CA G5H sing 86 n n O3' C3' G5H sing 87 n n O2' C2' G5H sing 88 n n C4' C5' G5H sing 89 n n C4' C3' G5H sing 90 n n C4' O4' G5H sing 91 n n C5' O5' G5H sing 92 n n CA N G5H sing 93 n n CA C G5H sing 94 n n C3' C2' G5H sing 95 n n O4' C1' G5H sing 96 n n C2' C1' G5H sing 97 n n C1' N1 G5H sing 98 n n C N3S G5H sing 99 n n C O G5H doub 100 n n N3S S G5H sing 101 n n O5' S G5H sing 102 n n O2S S G5H doub 103 n n S O1S G5H doub 104 n n O2 C2 G5H doub 105 n n N1 C2 G5H sing 106 n n N1 C6 G5H sing 107 n n C2 N3 G5H sing 108 n n C6 C5 G5H doub 109 n n N3 C4 G5H sing 110 n n C5 C4 G5H sing 111 n n C4 O4 G5H doub 112 n n C5' H1 G5H sing 113 n n C5' H2 G5H sing 114 n n O2' H3 G5H sing 115 n n C4' H4 G5H sing 116 n n C3' H5 G5H sing 117 n n O3' H6 G5H sing 118 n n C2' H7 G5H sing 119 n n C1' H8 G5H sing 120 n n C5 H9 G5H sing 121 n n C6 H10 G5H sing 122 n n N H11 G5H sing 123 n n N H12 G5H sing 124 n n CA H14 G5H sing 125 n n CB H15 G5H sing 126 n n CB H16 G5H sing 127 n n OD2 H17 G5H sing 128 n n N3 H18 G5H sing 129 n n N3S H19 G5H sing 130 n n # _atom_sites.entry_id 6HHW _atom_sites.fract_transf_matrix[1][1] 0.012232 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003258 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008858 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011823 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 G5H A 1 601 1 G5H DSU . D 2 G5H B 1 601 2 G5H DSU . E 3 HOH A 1 701 102 HOH HOH . E 3 HOH A 2 702 6 HOH HOH . E 3 HOH A 3 703 11 HOH HOH . E 3 HOH A 4 704 15 HOH HOH . E 3 HOH A 5 705 155 HOH HOH . E 3 HOH A 6 706 16 HOH HOH . E 3 HOH A 7 707 100 HOH HOH . E 3 HOH A 8 708 135 HOH HOH . E 3 HOH A 9 709 9 HOH HOH . E 3 HOH A 10 710 37 HOH HOH . E 3 HOH A 11 711 75 HOH HOH . E 3 HOH A 12 712 171 HOH HOH . E 3 HOH A 13 713 106 HOH HOH . E 3 HOH A 14 714 19 HOH HOH . E 3 HOH A 15 715 111 HOH HOH . E 3 HOH A 16 716 53 HOH HOH . E 3 HOH A 17 717 1 HOH HOH . E 3 HOH A 18 718 22 HOH HOH . E 3 HOH A 19 719 48 HOH HOH . E 3 HOH A 20 720 40 HOH HOH . E 3 HOH A 21 721 34 HOH HOH . E 3 HOH A 22 722 85 HOH HOH . E 3 HOH A 23 723 114 HOH HOH . E 3 HOH A 24 724 107 HOH HOH . E 3 HOH A 25 725 21 HOH HOH . E 3 HOH A 26 726 18 HOH HOH . E 3 HOH A 27 727 140 HOH HOH . E 3 HOH A 28 728 52 HOH HOH . E 3 HOH A 29 729 64 HOH HOH . E 3 HOH A 30 730 44 HOH HOH . E 3 HOH A 31 731 54 HOH HOH . E 3 HOH A 32 732 60 HOH HOH . E 3 HOH A 33 733 143 HOH HOH . E 3 HOH A 34 734 62 HOH HOH . E 3 HOH A 35 735 5 HOH HOH . E 3 HOH A 36 736 123 HOH HOH . E 3 HOH A 37 737 131 HOH HOH . E 3 HOH A 38 738 97 HOH HOH . E 3 HOH A 39 739 41 HOH HOH . E 3 HOH A 40 740 28 HOH HOH . E 3 HOH A 41 741 58 HOH HOH . E 3 HOH A 42 742 26 HOH HOH . E 3 HOH A 43 743 90 HOH HOH . E 3 HOH A 44 744 4 HOH HOH . E 3 HOH A 45 745 55 HOH HOH . E 3 HOH A 46 746 112 HOH HOH . E 3 HOH A 47 747 172 HOH HOH . E 3 HOH A 48 748 63 HOH HOH . E 3 HOH A 49 749 87 HOH HOH . E 3 HOH A 50 750 20 HOH HOH . E 3 HOH A 51 751 141 HOH HOH . E 3 HOH A 52 752 110 HOH HOH . E 3 HOH A 53 753 12 HOH HOH . E 3 HOH A 54 754 105 HOH HOH . E 3 HOH A 55 755 29 HOH HOH . E 3 HOH A 56 756 156 HOH HOH . E 3 HOH A 57 757 133 HOH HOH . E 3 HOH A 58 758 33 HOH HOH . E 3 HOH A 59 759 73 HOH HOH . E 3 HOH A 60 760 23 HOH HOH . E 3 HOH A 61 761 74 HOH HOH . E 3 HOH A 62 762 43 HOH HOH . E 3 HOH A 63 763 47 HOH HOH . E 3 HOH A 64 764 77 HOH HOH . E 3 HOH A 65 765 150 HOH HOH . E 3 HOH A 66 766 147 HOH HOH . E 3 HOH A 67 767 122 HOH HOH . E 3 HOH A 68 768 109 HOH HOH . E 3 HOH A 69 769 115 HOH HOH . E 3 HOH A 70 770 96 HOH HOH . E 3 HOH A 71 771 113 HOH HOH . E 3 HOH A 72 772 17 HOH HOH . E 3 HOH A 73 773 61 HOH HOH . E 3 HOH A 74 774 68 HOH HOH . E 3 HOH A 75 775 124 HOH HOH . E 3 HOH A 76 776 161 HOH HOH . E 3 HOH A 77 777 31 HOH HOH . E 3 HOH A 78 778 81 HOH HOH . E 3 HOH A 79 779 152 HOH HOH . E 3 HOH A 80 780 84 HOH HOH . E 3 HOH A 81 781 169 HOH HOH . E 3 HOH A 82 782 79 HOH HOH . E 3 HOH A 83 783 160 HOH HOH . E 3 HOH A 84 784 154 HOH HOH . E 3 HOH A 85 785 149 HOH HOH . E 3 HOH A 86 786 153 HOH HOH . E 3 HOH A 87 787 80 HOH HOH . E 3 HOH A 88 788 167 HOH HOH . E 3 HOH A 89 789 136 HOH HOH . E 3 HOH A 90 790 39 HOH HOH . E 3 HOH A 91 791 165 HOH HOH . E 3 HOH A 92 792 134 HOH HOH . F 3 HOH B 1 701 69 HOH HOH . F 3 HOH B 2 702 56 HOH HOH . F 3 HOH B 3 703 50 HOH HOH . F 3 HOH B 4 704 30 HOH HOH . F 3 HOH B 5 705 174 HOH HOH . F 3 HOH B 6 706 10 HOH HOH . F 3 HOH B 7 707 38 HOH HOH . F 3 HOH B 8 708 49 HOH HOH . F 3 HOH B 9 709 103 HOH HOH . F 3 HOH B 10 710 72 HOH HOH . F 3 HOH B 11 711 101 HOH HOH . F 3 HOH B 12 712 36 HOH HOH . F 3 HOH B 13 713 128 HOH HOH . F 3 HOH B 14 714 137 HOH HOH . F 3 HOH B 15 715 25 HOH HOH . F 3 HOH B 16 716 14 HOH HOH . F 3 HOH B 17 717 67 HOH HOH . F 3 HOH B 18 718 145 HOH HOH . F 3 HOH B 19 719 7 HOH HOH . F 3 HOH B 20 720 35 HOH HOH . F 3 HOH B 21 721 42 HOH HOH . F 3 HOH B 22 722 78 HOH HOH . F 3 HOH B 23 723 120 HOH HOH . F 3 HOH B 24 724 46 HOH HOH . F 3 HOH B 25 725 65 HOH HOH . F 3 HOH B 26 726 94 HOH HOH . F 3 HOH B 27 727 92 HOH HOH . F 3 HOH B 28 728 8 HOH HOH . F 3 HOH B 29 729 66 HOH HOH . F 3 HOH B 30 730 121 HOH HOH . F 3 HOH B 31 731 91 HOH HOH . F 3 HOH B 32 732 176 HOH HOH . F 3 HOH B 33 733 157 HOH HOH . F 3 HOH B 34 734 118 HOH HOH . F 3 HOH B 35 735 51 HOH HOH . F 3 HOH B 36 736 162 HOH HOH . F 3 HOH B 37 737 117 HOH HOH . F 3 HOH B 38 738 32 HOH HOH . F 3 HOH B 39 739 27 HOH HOH . F 3 HOH B 40 740 70 HOH HOH . F 3 HOH B 41 741 24 HOH HOH . F 3 HOH B 42 742 57 HOH HOH . F 3 HOH B 43 743 76 HOH HOH . F 3 HOH B 44 744 125 HOH HOH . F 3 HOH B 45 745 108 HOH HOH . F 3 HOH B 46 746 98 HOH HOH . F 3 HOH B 47 747 170 HOH HOH . F 3 HOH B 48 748 175 HOH HOH . F 3 HOH B 49 749 59 HOH HOH . F 3 HOH B 50 750 3 HOH HOH . F 3 HOH B 51 751 146 HOH HOH . F 3 HOH B 52 752 130 HOH HOH . F 3 HOH B 53 753 88 HOH HOH . F 3 HOH B 54 754 138 HOH HOH . F 3 HOH B 55 755 71 HOH HOH . F 3 HOH B 56 756 93 HOH HOH . F 3 HOH B 57 757 159 HOH HOH . F 3 HOH B 58 758 116 HOH HOH . F 3 HOH B 59 759 119 HOH HOH . F 3 HOH B 60 760 89 HOH HOH . F 3 HOH B 61 761 126 HOH HOH . F 3 HOH B 62 762 173 HOH HOH . F 3 HOH B 63 763 144 HOH HOH . F 3 HOH B 64 764 99 HOH HOH . F 3 HOH B 65 765 83 HOH HOH . F 3 HOH B 66 766 148 HOH HOH . F 3 HOH B 67 767 158 HOH HOH . F 3 HOH B 68 768 95 HOH HOH . F 3 HOH B 69 769 86 HOH HOH . F 3 HOH B 70 770 129 HOH HOH . F 3 HOH B 71 771 177 HOH HOH . F 3 HOH B 72 772 127 HOH HOH . F 3 HOH B 73 773 151 HOH HOH . F 3 HOH B 74 774 166 HOH HOH . F 3 HOH B 75 775 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5' G5H . . . D 2 -47.549 -19.165 -14.601 1 54.26 ? C5' G5H 601 B 1 HETATM 2 O O2' G5H . . . D 2 -46.071 -22.733 -17.011 1 52.51 ? O2' G5H 601 B 1 HETATM 3 C C4' G5H . . . D 2 -46.813 -20.23 -15.371 1 48.95 ? C4' G5H 601 B 1 HETATM 4 O O4' G5H . . . D 2 -45.461 -20.327 -14.88 1 49.82 ? O4' G5H 601 B 1 HETATM 5 C C3' G5H . . . D 2 -47.358 -21.643 -15.233 1 51.59 ? C3' G5H 601 B 1 HETATM 6 O O3' G5H . . . D 2 -48.443 -21.885 -16.122 1 61.03 ? O3' G5H 601 B 1 HETATM 7 C C2' G5H . . . D 2 -46.145 -22.5 -15.61 1 44.91 ? C2' G5H 601 B 1 HETATM 8 C C1' G5H . . . D 2 -44.961 -21.625 -15.168 1 50.45 ? C1' G5H 601 B 1 HETATM 9 C C5 G5H . . . D 2 -44.204 -22.475 -11.619 1 50.09 ? C5 G5H 601 B 1 HETATM 10 C C6 G5H . . . D 2 -44.818 -22.006 -12.72 1 48.33 ? C6 G5H 601 B 1 HETATM 11 C C4 G5H . . . D 2 -42.938 -23.136 -11.74 1 50.98 ? C4 G5H 601 B 1 HETATM 12 O O4 G5H . . . D 2 -42.263 -23.579 -10.798 1 60.46 ? O4 G5H 601 B 1 HETATM 13 C C2 G5H . . . D 2 -43.063 -22.779 -14.174 1 59.36 ? C2 G5H 601 B 1 HETATM 14 O O2 G5H . . . D 2 -42.56 -22.927 -15.28 1 65.28 ? O2 G5H 601 B 1 HETATM 15 N N G5H . . . D 2 -48.9 -14.437 -11.458 1 45.98 ? N G5H 601 B 1 HETATM 16 C CA G5H . . . D 2 -49.477 -15.497 -12.304 1 51.81 ? CA G5H 601 B 1 HETATM 17 C C G5H . . . D 2 -48.572 -16.71 -12.104 1 57.78 ? C G5H 601 B 1 HETATM 18 O O G5H . . . D 2 -47.384 -16.749 -11.79 1 50.11 ? O G5H 601 B 1 HETATM 19 C CB G5H . . . D 2 -49.568 -15.15 -13.791 1 44.79 ? CB G5H 601 B 1 HETATM 20 C CG G5H . . . D 2 -50.853 -14.389 -14.104 1 53.11 ? CG G5H 601 B 1 HETATM 21 O OD1 G5H . . . D 2 -50.79 -13.511 -14.997 1 46.4 ? OD1 G5H 601 B 1 HETATM 22 O OD2 G5H . . . D 2 -51.889 -14.684 -13.464 1 47.69 ? OD2 G5H 601 B 1 HETATM 23 N N1 G5H . . . D 2 -44.273 -22.142 -13.98 1 53.36 ? N1 G5H 601 B 1 HETATM 24 N N3 G5H . . . D 2 -42.461 -23.244 -13.03 1 52.95 ? N3 G5H 601 B 1 HETATM 25 N N3S G5H . . . D 2 -49.21 -17.977 -12.34 1 50.22 ? N3S G5H 601 B 1 HETATM 26 O O1S G5H . . . D 2 -47.931 -19.494 -10.897 1 45.08 ? O1S G5H 601 B 1 HETATM 27 O O2S G5H . . . D 2 -49.323 -20.424 -12.719 1 55.6 ? O2S G5H 601 B 1 HETATM 28 O O5' G5H . . . D 2 -47.254 -19.373 -13.192 1 54.61 ? O5' G5H 601 B 1 HETATM 29 S S G5H . . . D 2 -48.495 -19.396 -12.196 1 54.6 ? S G5H 601 B 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #