data_6HHX
#
_model_server_result.job_id            -X5HaHwzGq9ecO1pCpfW_g 
_model_server_result.datetime_utc      '2024-10-19 14:19:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hhx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    6HHX 
#
_exptl.entry_id    6HHX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              437.382 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-O-(N-(L-aspartyl)-sulfamoyl)cytidine" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.4 
_cell.angle_gamma         90 
_cell.entry_id            6HHX 
_cell.length_a            82.123 
_cell.length_b            112.706 
_cell.length_c            88.679 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HHX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C13 H19 N5 O10 S' 
_chem_comp.formula_weight    437.382 
_chem_comp.id                G5N 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-O-(N-(L-aspartyl)-sulfamoyl)cytidine" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OD1 CG G5N doub 83 n n 
CG OD2 G5N sing 84 n n 
CG CB G5N sing 85 n n 
CB CA G5N sing 86 n n 
O3' C3' G5N sing 87 n n 
O2' C2' G5N sing 88 n n 
C4' C5' G5N sing 89 n n 
C4' C3' G5N sing 90 n n 
C4' O4' G5N sing 91 n n 
C5' O5' G5N sing 92 n n 
CA N G5N sing 93 n n 
CA C G5N sing 94 n n 
C3' C2' G5N sing 95 n n 
O4' C1' G5N sing 96 n n 
C2' C1' G5N sing 97 n n 
C N3S G5N sing 98 n n 
C O G5N doub 99 n n 
C1' N1 G5N sing 100 n n 
N3S S G5N sing 101 n n 
O5' S G5N sing 102 n n 
O2S S G5N doub 103 n n 
O2 C2 G5N doub 104 n n 
S O1S G5N doub 105 n n 
N1 C2 G5N sing 106 n n 
N1 C6 G5N sing 107 n n 
C2 N3 G5N sing 108 n n 
C6 C5 G5N doub 109 n n 
N3 C4 G5N doub 110 n n 
C5 C4 G5N sing 111 n n 
C4 N4 G5N sing 112 n n 
C5 H1 G5N sing 113 n n 
C6 H2 G5N sing 114 n n 
N H3 G5N sing 115 n n 
N H4 G5N sing 116 n n 
CA H6 G5N sing 117 n n 
CB H7 G5N sing 118 n n 
CB H8 G5N sing 119 n n 
OD2 H9 G5N sing 120 n n 
C1' H10 G5N sing 121 n n 
C2' H11 G5N sing 122 n n 
C3' H12 G5N sing 123 n n 
C4' H13 G5N sing 124 n n 
C5' H14 G5N sing 125 n n 
C5' H15 G5N sing 126 n n 
N3S H16 G5N sing 127 n n 
N4 H17 G5N sing 128 n n 
N4 H18 G5N sing 129 n n 
O2' H19 G5N sing 130 n n 
O3' H20 G5N sing 131 n n 
#
_atom_sites.entry_id                     6HHX 
_atom_sites.fract_transf_matrix[1][1]    0.012177 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003126 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008873 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011642 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 G5N A 1 601 1 G5N DSC . 
D 2 G5N B 1 601 2 G5N DSC . 
E 3 HOH A 1 701 171 HOH HOH . 
E 3 HOH A 2 702 100 HOH HOH . 
E 3 HOH A 3 703 11 HOH HOH . 
E 3 HOH A 4 704 6 HOH HOH . 
E 3 HOH A 5 705 16 HOH HOH . 
E 3 HOH A 6 706 102 HOH HOH . 
E 3 HOH A 7 707 15 HOH HOH . 
E 3 HOH A 8 708 9 HOH HOH . 
E 3 HOH A 9 709 75 HOH HOH . 
E 3 HOH A 10 710 64 HOH HOH . 
E 3 HOH A 11 711 135 HOH HOH . 
E 3 HOH A 12 712 123 HOH HOH . 
E 3 HOH A 13 713 40 HOH HOH . 
E 3 HOH A 14 714 37 HOH HOH . 
E 3 HOH A 15 715 170 HOH HOH . 
E 3 HOH A 16 716 53 HOH HOH . 
E 3 HOH A 17 717 26 HOH HOH . 
E 3 HOH A 18 718 48 HOH HOH . 
E 3 HOH A 19 719 54 HOH HOH . 
E 3 HOH A 20 720 131 HOH HOH . 
E 3 HOH A 21 721 63 HOH HOH . 
E 3 HOH A 22 722 69 HOH HOH . 
E 3 HOH A 23 723 85 HOH HOH . 
E 3 HOH A 24 724 106 HOH HOH . 
E 3 HOH A 25 725 4 HOH HOH . 
E 3 HOH A 26 726 34 HOH HOH . 
E 3 HOH A 27 727 133 HOH HOH . 
E 3 HOH A 28 728 52 HOH HOH . 
E 3 HOH A 29 729 140 HOH HOH . 
E 3 HOH A 30 730 155 HOH HOH . 
E 3 HOH A 31 731 143 HOH HOH . 
E 3 HOH A 32 732 22 HOH HOH . 
E 3 HOH A 33 733 41 HOH HOH . 
E 3 HOH A 34 734 111 HOH HOH . 
E 3 HOH A 35 735 55 HOH HOH . 
E 3 HOH A 36 736 28 HOH HOH . 
E 3 HOH A 37 737 72 HOH HOH . 
E 3 HOH A 38 738 60 HOH HOH . 
E 3 HOH A 39 739 114 HOH HOH . 
E 3 HOH A 40 740 1 HOH HOH . 
E 3 HOH A 41 741 19 HOH HOH . 
E 3 HOH A 42 742 12 HOH HOH . 
E 3 HOH A 43 743 68 HOH HOH . 
E 3 HOH A 44 744 21 HOH HOH . 
E 3 HOH A 45 745 58 HOH HOH . 
E 3 HOH A 46 746 20 HOH HOH . 
E 3 HOH A 47 747 43 HOH HOH . 
E 3 HOH A 48 748 29 HOH HOH . 
E 3 HOH A 49 749 109 HOH HOH . 
E 3 HOH A 50 750 107 HOH HOH . 
E 3 HOH A 51 751 97 HOH HOH . 
E 3 HOH A 52 752 87 HOH HOH . 
E 3 HOH A 53 753 5 HOH HOH . 
E 3 HOH A 54 754 18 HOH HOH . 
E 3 HOH A 55 755 150 HOH HOH . 
E 3 HOH A 56 756 137 HOH HOH . 
E 3 HOH A 57 757 61 HOH HOH . 
E 3 HOH A 58 758 33 HOH HOH . 
E 3 HOH A 59 759 77 HOH HOH . 
E 3 HOH A 60 760 154 HOH HOH . 
E 3 HOH A 61 761 105 HOH HOH . 
E 3 HOH A 62 762 84 HOH HOH . 
E 3 HOH A 63 763 17 HOH HOH . 
E 3 HOH A 64 764 141 HOH HOH . 
E 3 HOH A 65 765 73 HOH HOH . 
E 3 HOH A 66 766 115 HOH HOH . 
E 3 HOH A 67 767 47 HOH HOH . 
E 3 HOH A 68 768 161 HOH HOH . 
E 3 HOH A 69 769 178 HOH HOH . 
E 3 HOH A 70 770 124 HOH HOH . 
E 3 HOH A 71 771 122 HOH HOH . 
E 3 HOH A 72 772 90 HOH HOH . 
E 3 HOH A 73 773 44 HOH HOH . 
E 3 HOH A 74 774 31 HOH HOH . 
E 3 HOH A 75 775 23 HOH HOH . 
E 3 HOH A 76 776 113 HOH HOH . 
E 3 HOH A 77 777 96 HOH HOH . 
E 3 HOH A 78 778 74 HOH HOH . 
E 3 HOH A 79 779 110 HOH HOH . 
E 3 HOH A 80 780 147 HOH HOH . 
E 3 HOH A 81 781 79 HOH HOH . 
E 3 HOH A 82 782 129 HOH HOH . 
E 3 HOH A 83 783 81 HOH HOH . 
E 3 HOH A 84 784 160 HOH HOH . 
E 3 HOH A 85 785 152 HOH HOH . 
E 3 HOH A 86 786 62 HOH HOH . 
E 3 HOH A 87 787 149 HOH HOH . 
E 3 HOH A 88 788 153 HOH HOH . 
E 3 HOH A 89 789 39 HOH HOH . 
E 3 HOH A 90 790 169 HOH HOH . 
E 3 HOH A 91 791 80 HOH HOH . 
E 3 HOH A 92 792 136 HOH HOH . 
E 3 HOH A 93 793 134 HOH HOH . 
E 3 HOH A 94 794 139 HOH HOH . 
E 3 HOH A 95 795 165 HOH HOH . 
F 3 HOH B 1 701 128 HOH HOH . 
F 3 HOH B 2 702 56 HOH HOH . 
F 3 HOH B 3 703 38 HOH HOH . 
F 3 HOH B 4 704 50 HOH HOH . 
F 3 HOH B 5 705 30 HOH HOH . 
F 3 HOH B 6 706 125 HOH HOH . 
F 3 HOH B 7 707 49 HOH HOH . 
F 3 HOH B 8 708 101 HOH HOH . 
F 3 HOH B 9 709 103 HOH HOH . 
F 3 HOH B 10 710 25 HOH HOH . 
F 3 HOH B 11 711 46 HOH HOH . 
F 3 HOH B 12 712 162 HOH HOH . 
F 3 HOH B 13 713 145 HOH HOH . 
F 3 HOH B 14 714 36 HOH HOH . 
F 3 HOH B 15 715 76 HOH HOH . 
F 3 HOH B 16 716 10 HOH HOH . 
F 3 HOH B 17 717 7 HOH HOH . 
F 3 HOH B 18 718 24 HOH HOH . 
F 3 HOH B 19 719 67 HOH HOH . 
F 3 HOH B 20 720 120 HOH HOH . 
F 3 HOH B 21 721 42 HOH HOH . 
F 3 HOH B 22 722 174 HOH HOH . 
F 3 HOH B 23 723 14 HOH HOH . 
F 3 HOH B 24 724 35 HOH HOH . 
F 3 HOH B 25 725 65 HOH HOH . 
F 3 HOH B 26 726 121 HOH HOH . 
F 3 HOH B 27 727 176 HOH HOH . 
F 3 HOH B 28 728 32 HOH HOH . 
F 3 HOH B 29 729 175 HOH HOH . 
F 3 HOH B 30 730 157 HOH HOH . 
F 3 HOH B 31 731 78 HOH HOH . 
F 3 HOH B 32 732 92 HOH HOH . 
F 3 HOH B 33 733 3 HOH HOH . 
F 3 HOH B 34 734 66 HOH HOH . 
F 3 HOH B 35 735 117 HOH HOH . 
F 3 HOH B 36 736 57 HOH HOH . 
F 3 HOH B 37 737 118 HOH HOH . 
F 3 HOH B 38 738 51 HOH HOH . 
F 3 HOH B 39 739 27 HOH HOH . 
F 3 HOH B 40 740 88 HOH HOH . 
F 3 HOH B 41 741 148 HOH HOH . 
F 3 HOH B 42 742 8 HOH HOH . 
F 3 HOH B 43 743 94 HOH HOH . 
F 3 HOH B 44 744 70 HOH HOH . 
F 3 HOH B 45 745 98 HOH HOH . 
F 3 HOH B 46 746 59 HOH HOH . 
F 3 HOH B 47 747 91 HOH HOH . 
F 3 HOH B 48 748 130 HOH HOH . 
F 3 HOH B 49 749 89 HOH HOH . 
F 3 HOH B 50 750 126 HOH HOH . 
F 3 HOH B 51 751 108 HOH HOH . 
F 3 HOH B 52 752 116 HOH HOH . 
F 3 HOH B 53 753 159 HOH HOH . 
F 3 HOH B 54 754 93 HOH HOH . 
F 3 HOH B 55 755 86 HOH HOH . 
F 3 HOH B 56 756 144 HOH HOH . 
F 3 HOH B 57 757 119 HOH HOH . 
F 3 HOH B 58 758 177 HOH HOH . 
F 3 HOH B 59 759 71 HOH HOH . 
F 3 HOH B 60 760 158 HOH HOH . 
F 3 HOH B 61 761 173 HOH HOH . 
F 3 HOH B 62 762 138 HOH HOH . 
F 3 HOH B 63 763 83 HOH HOH . 
F 3 HOH B 64 764 99 HOH HOH . 
F 3 HOH B 65 765 127 HOH HOH . 
F 3 HOH B 66 766 95 HOH HOH . 
F 3 HOH B 67 767 166 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S G5N . . . D 2 -48.835 -19.324 -12.473 1 54.05 ? S G5N 601 B 1 
HETATM 2 O O1S G5N . . . D 2 -48.268 -19.368 -11.17 1 44.28 ? O1S G5N 601 B 1 
HETATM 3 O O2S G5N . . . D 2 -49.69 -20.355 -12.945 1 56.62 ? O2S G5N 601 B 1 
HETATM 4 C C2 G5N . . . D 2 -43.3 -22.593 -14.481 1 59.34 ? C2 G5N 601 B 1 
HETATM 5 C C4 G5N . . . D 2 -43.18 -22.951 -12.161 1 46.63 ? C4 G5N 601 B 1 
HETATM 6 C C5 G5N . . . D 2 -44.44 -22.312 -11.96 1 49.78 ? C5 G5N 601 B 1 
HETATM 7 C C6 G5N . . . D 2 -45.076 -21.838 -13.046 1 46.22 ? C6 G5N 601 B 1 
HETATM 8 N N G5N . . . D 2 -49.257 -14.338 -11.98 1 44.44 ? N G5N 601 B 1 
HETATM 9 C CA G5N . . . D 2 -49.894 -15.415 -12.758 1 51.07 ? CA G5N 601 B 1 
HETATM 10 C C G5N . . . D 2 -49.005 -16.637 -12.503 1 58.73 ? C G5N 601 B 1 
HETATM 11 O O G5N . . . D 2 -47.82 -16.596 -12.181 1 44.21 ? O G5N 601 B 1 
HETATM 12 C CB G5N . . . D 2 -49.997 -15.149 -14.264 1 48.84 ? CB G5N 601 B 1 
HETATM 13 C CG G5N . . . D 2 -51.245 -14.308 -14.521 1 59.53 ? CG G5N 601 B 1 
HETATM 14 O OD1 G5N . . . D 2 -51.197 -13.447 -15.428 1 53.54 ? OD1 G5N 601 B 1 
HETATM 15 O OD2 G5N . . . D 2 -52.254 -14.542 -13.814 1 50.84 ? OD2 G5N 601 B 1 
HETATM 16 C C1' G5N . . . D 2 -45.251 -21.461 -15.494 1 47.97 ? C1' G5N 601 B 1 
HETATM 17 C C2' G5N . . . D 2 -46.42 -22.362 -15.942 1 40.31 ? C2' G5N 601 B 1 
HETATM 18 C C3' G5N . . . D 2 -47.655 -21.533 -15.571 1 46.26 ? C3' G5N 601 B 1 
HETATM 19 C C4' G5N . . . D 2 -47.139 -20.107 -15.676 1 45.9 ? C4' G5N 601 B 1 
HETATM 20 C C5' G5N . . . D 2 -47.906 -19.085 -14.877 1 49.44 ? C5' G5N 601 B 1 
HETATM 21 N N1 G5N . . . D 2 -44.536 -21.965 -14.302 1 53.6 ? N1 G5N 601 B 1 
HETATM 22 N N3 G5N . . . D 2 -42.647 -23.081 -13.387 1 45.59 ? N3 G5N 601 B 1 
HETATM 23 N N3S G5N . . . D 2 -49.592 -17.935 -12.675 1 50.1 ? N3S G5N 601 B 1 
HETATM 24 N N4 G5N . . . D 2 -42.491 -23.425 -11.123 1 53.97 ? N4 G5N 601 B 1 
HETATM 25 O O2 G5N . . . D 2 -42.836 -22.683 -15.623 1 59.5 ? O2 G5N 601 B 1 
HETATM 26 O O2' G5N . . . D 2 -46.354 -22.615 -17.339 1 54.99 ? O2' G5N 601 B 1 
HETATM 27 O O3' G5N . . . D 2 -48.735 -21.727 -16.479 1 50.96 ? O3' G5N 601 B 1 
HETATM 28 O O4' G5N . . . D 2 -45.782 -20.179 -15.196 1 50.65 ? O4' G5N 601 B 1 
HETATM 29 O O5' G5N . . . D 2 -47.601 -19.322 -13.479 1 54.57 ? O5' G5N 601 B 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           29 
#