data_6HHY # _model_server_result.job_id 8A4CnWRA8AkARO5Xx2tiaQ _model_server_result.datetime_utc '2024-11-24 16:05:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hhy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 6HHY # _exptl.entry_id 6HHY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 424.384 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-(N-(L-seryl)-sulfamoyl)N3-methyluridine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HHY _cell.length_a 83.721 _cell.length_b 83.721 _cell.length_c 228.419 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HHY _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 254 A ASP 254 1_555 F CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc2 F CA CA . A CA 505 1_555 I O HOH . A HOH 616 5_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc3 F CA CA . A CA 505 1_555 I O HOH . A HOH 627 5_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc4 F CA CA . A CA 505 1_555 I O HOH . A HOH 630 5_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc5 F CA CA . A CA 505 1_555 I O HOH . A HOH 654 5_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc6 F CA CA . A CA 505 1_555 I O HOH . A HOH 655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc7 F CA CA . A CA 505 1_555 I O HOH . A HOH 685 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc8 H CA CA . A CA 507 1_555 I O HOH . A HOH 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? # _chem_comp.formula 'C13 H20 N4 O10 S' _chem_comp.formula_weight 424.384 _chem_comp.id FZT _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-(N-(L-seryl)-sulfamoyl)N3-methyluridine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OG CB FZT sing 92 n n CB CA FZT sing 93 n n N CA FZT sing 94 n n CA C FZT sing 95 n n C O FZT doub 96 n n C N3S FZT sing 97 n n C5' C4' FZT sing 98 n n C5' O5' FZT sing 99 n n N3S S FZT sing 100 n n C4' O4' FZT sing 101 n n C4' C3' FZT sing 102 n n O3' C3' FZT sing 103 n n O5' S FZT sing 104 n n O4' C1' FZT sing 105 n n O2' C2' FZT sing 106 n n C3' C2' FZT sing 107 n n S O2S FZT doub 108 n n S O1S FZT doub 109 n n C1' C2' FZT sing 110 n n C1' N1 FZT sing 111 n n O2 C2 FZT doub 112 n n N1 C2 FZT sing 113 n n N1 C6 FZT sing 114 n n C2 N3 FZT sing 115 n n C6 C5 FZT doub 116 n n N3 C3U FZT sing 117 n n N3 C4 FZT sing 118 n n C5 C4 FZT sing 119 n n C4 O4 FZT doub 120 n n C3U H1 FZT sing 121 n n C3U H2 FZT sing 122 n n C3U H3 FZT sing 123 n n C5 H4 FZT sing 124 n n C6 H5 FZT sing 125 n n C1' H6 FZT sing 126 n n C4' H7 FZT sing 127 n n C5' H8 FZT sing 128 n n C5' H9 FZT sing 129 n n N3S H10 FZT sing 130 n n CA H11 FZT sing 131 n n N H12 FZT sing 132 n n N H13 FZT sing 133 n n CB H15 FZT sing 134 n n CB H16 FZT sing 135 n n OG H17 FZT sing 136 n n C3' H18 FZT sing 137 n n O3' H19 FZT sing 138 n n C2' H20 FZT sing 139 n n O2' H21 FZT sing 140 n n # _atom_sites.entry_id 6HHY _atom_sites.fract_transf_matrix[1][1] 0.011944 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011944 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004378 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 501 1 EDO EDO . C 2 EDO A 1 502 2 EDO EDO . D 2 EDO A 1 503 4 EDO EDO . E 3 FZT A 1 504 1 FZT S3U . F 4 CA A 1 505 1 CA CA . G 4 CA A 1 506 2 CA CA . H 4 CA A 1 507 4 CA CA . I 5 HOH A 1 601 29 HOH HOH . I 5 HOH A 2 602 19 HOH HOH . I 5 HOH A 3 603 67 HOH HOH . I 5 HOH A 4 604 24 HOH HOH . I 5 HOH A 5 605 8 HOH HOH . I 5 HOH A 6 606 37 HOH HOH . I 5 HOH A 7 607 7 HOH HOH . I 5 HOH A 8 608 11 HOH HOH . I 5 HOH A 9 609 10 HOH HOH . I 5 HOH A 10 610 66 HOH HOH . I 5 HOH A 11 611 45 HOH HOH . I 5 HOH A 12 612 35 HOH HOH . I 5 HOH A 13 613 39 HOH HOH . I 5 HOH A 14 614 3 HOH HOH . I 5 HOH A 15 615 1 HOH HOH . I 5 HOH A 16 616 51 HOH HOH . I 5 HOH A 17 617 59 HOH HOH . I 5 HOH A 18 618 30 HOH HOH . I 5 HOH A 19 619 48 HOH HOH . I 5 HOH A 20 620 57 HOH HOH . I 5 HOH A 21 621 26 HOH HOH . I 5 HOH A 22 622 5 HOH HOH . I 5 HOH A 23 623 20 HOH HOH . I 5 HOH A 24 624 2 HOH HOH . I 5 HOH A 25 625 36 HOH HOH . I 5 HOH A 26 626 73 HOH HOH . I 5 HOH A 27 627 53 HOH HOH . I 5 HOH A 28 628 23 HOH HOH . I 5 HOH A 29 629 61 HOH HOH . I 5 HOH A 30 630 50 HOH HOH . I 5 HOH A 31 631 15 HOH HOH . I 5 HOH A 32 632 13 HOH HOH . I 5 HOH A 33 633 46 HOH HOH . I 5 HOH A 34 634 84 HOH HOH . I 5 HOH A 35 635 9 HOH HOH . I 5 HOH A 36 636 34 HOH HOH . I 5 HOH A 37 637 72 HOH HOH . I 5 HOH A 38 638 6 HOH HOH . I 5 HOH A 39 639 27 HOH HOH . I 5 HOH A 40 640 4 HOH HOH . I 5 HOH A 41 641 17 HOH HOH . I 5 HOH A 42 642 18 HOH HOH . I 5 HOH A 43 643 42 HOH HOH . I 5 HOH A 44 644 69 HOH HOH . I 5 HOH A 45 645 33 HOH HOH . I 5 HOH A 46 646 16 HOH HOH . I 5 HOH A 47 647 70 HOH HOH . I 5 HOH A 48 648 47 HOH HOH . I 5 HOH A 49 649 68 HOH HOH . I 5 HOH A 50 650 25 HOH HOH . I 5 HOH A 51 651 22 HOH HOH . I 5 HOH A 52 652 62 HOH HOH . I 5 HOH A 53 653 60 HOH HOH . I 5 HOH A 54 654 54 HOH HOH . I 5 HOH A 55 655 52 HOH HOH . I 5 HOH A 56 656 56 HOH HOH . I 5 HOH A 57 657 43 HOH HOH . I 5 HOH A 58 658 49 HOH HOH . I 5 HOH A 59 659 65 HOH HOH . I 5 HOH A 60 660 63 HOH HOH . I 5 HOH A 61 661 28 HOH HOH . I 5 HOH A 62 662 21 HOH HOH . I 5 HOH A 63 663 41 HOH HOH . I 5 HOH A 64 664 32 HOH HOH . I 5 HOH A 65 665 85 HOH HOH . I 5 HOH A 66 666 71 HOH HOH . I 5 HOH A 67 667 74 HOH HOH . I 5 HOH A 68 668 14 HOH HOH . I 5 HOH A 69 669 75 HOH HOH . I 5 HOH A 70 670 58 HOH HOH . I 5 HOH A 71 671 83 HOH HOH . I 5 HOH A 72 672 77 HOH HOH . I 5 HOH A 73 673 40 HOH HOH . I 5 HOH A 74 674 78 HOH HOH . I 5 HOH A 75 675 87 HOH HOH . I 5 HOH A 76 676 88 HOH HOH . I 5 HOH A 77 677 76 HOH HOH . I 5 HOH A 78 678 82 HOH HOH . I 5 HOH A 79 679 81 HOH HOH . I 5 HOH A 80 680 86 HOH HOH . I 5 HOH A 81 681 80 HOH HOH . I 5 HOH A 82 682 79 HOH HOH . I 5 HOH A 83 683 44 HOH HOH . I 5 HOH A 84 684 38 HOH HOH . I 5 HOH A 85 685 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3U FZT . . . E 3 -9.502 -28.716 4.39 1 40.98 ? C3U FZT 504 A 1 HETATM 2 N N3 FZT . . . E 3 -9.186 -29.542 3.219 1 41.99 ? N3 FZT 504 A 1 HETATM 3 C C4 FZT . . . E 3 -9.907 -30.733 3.04 1 43.63 ? C4 FZT 504 A 1 HETATM 4 O O4 FZT . . . E 3 -10.763 -31.054 3.864 1 45.49 ? O4 FZT 504 A 1 HETATM 5 C C5 FZT . . . E 3 -9.592 -31.483 1.847 1 41.94 ? C5 FZT 504 A 1 HETATM 6 C C6 FZT . . . E 3 -8.659 -31.034 0.986 1 42.75 ? C6 FZT 504 A 1 HETATM 7 N N1 FZT . . . E 3 -7.964 -29.851 1.219 1 44.11 ? N1 FZT 504 A 1 HETATM 8 C C1' FZT . . . E 3 -6.913 -29.383 0.279 1 49.3 ? C1' FZT 504 A 1 HETATM 9 O O4' FZT . . . E 3 -7.485 -29.208 -1.008 1 49.28 ? O4' FZT 504 A 1 HETATM 10 C C4' FZT . . . E 3 -6.442 -29.446 -1.968 1 48.88 ? C4' FZT 504 A 1 HETATM 11 C C5' FZT . . . E 3 -7.033 -29.673 -3.336 1 49.24 ? C5' FZT 504 A 1 HETATM 12 O O5' FZT . . . E 3 -7.948 -30.809 -3.246 1 50.28 ? O5' FZT 504 A 1 HETATM 13 S S FZT . . . E 3 -7.824 -32.007 -4.292 1 52.4 ? S FZT 504 A 1 HETATM 14 O O1S FZT . . . E 3 -9.067 -32.685 -4.186 1 53.3 ? O1S FZT 504 A 1 HETATM 15 O O2S FZT . . . E 3 -6.599 -32.669 -4.021 1 54.39 ? O2S FZT 504 A 1 HETATM 16 N N3S FZT . . . E 3 -7.685 -31.309 -5.719 1 54.11 ? N3S FZT 504 A 1 HETATM 17 C C FZT . . . E 3 -8.572 -30.338 -6.262 1 51.24 ? C FZT 504 A 1 HETATM 18 O O FZT . . . E 3 -9.58 -30.015 -5.635 1 52.67 ? O FZT 504 A 1 HETATM 19 C CA FZT . . . E 3 -8.184 -29.749 -7.59 1 49.42 ? CA FZT 504 A 1 HETATM 20 N N FZT . . . E 3 -9.233 -28.836 -8.055 1 47.94 ? N FZT 504 A 1 HETATM 21 C CB FZT . . . E 3 -6.889 -28.956 -7.428 1 49.51 ? CB FZT 504 A 1 HETATM 22 O OG FZT . . . E 3 -7.021 -27.972 -6.405 1 50.68 ? OG FZT 504 A 1 HETATM 23 C C3' FZT . . . E 3 -5.686 -30.628 -1.38 1 50.6 ? C3' FZT 504 A 1 HETATM 24 O O3' FZT . . . E 3 -4.385 -30.72 -1.948 1 52.05 ? O3' FZT 504 A 1 HETATM 25 C C2' FZT . . . E 3 -5.685 -30.31 0.121 1 51.02 ? C2' FZT 504 A 1 HETATM 26 O O2' FZT . . . E 3 -4.493 -29.615 0.47 1 52.62 ? O2' FZT 504 A 1 HETATM 27 C C2 FZT . . . E 3 -8.198 -29.067 2.336 1 42.31 ? C2 FZT 504 A 1 HETATM 28 O O2 FZT . . . E 3 -7.574 -28.043 2.574 1 42.67 ? O2 FZT 504 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #