data_6HHZ # _model_server_result.job_id yl-fMnAwZrUqYIUJLcN5lA _model_server_result.datetime_utc '2024-11-30 03:09:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hhz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 6HHZ # _exptl.entry_id 6HHZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 409.372 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-(N-(L-seryl)-sulfamoyl)cytidine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HHZ _cell.length_a 83.351 _cell.length_b 83.351 _cell.length_c 229.329 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HHZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 254 A ASP 254 1_555 F CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc2 F CA CA . A CA 505 1_555 K O HOH . A HOH 630 5_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc3 F CA CA . A CA 505 1_555 K O HOH . A HOH 646 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc4 F CA CA . A CA 505 1_555 K O HOH . A HOH 653 5_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc5 F CA CA . A CA 505 1_555 K O HOH . A HOH 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc6 F CA CA . A CA 505 1_555 K O HOH . A HOH 704 5_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc7 F CA CA . A CA 505 1_555 K O HOH . A HOH 779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc8 H CA CA . A CA 507 1_555 K O HOH . A HOH 764 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? # _chem_comp.formula 'C12 H19 N5 O9 S' _chem_comp.formula_weight 409.372 _chem_comp.id FZQ _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-(N-(L-seryl)-sulfamoyl)cytidine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2' C2' FZQ sing 129 n n O2 C2 FZQ doub 130 n n C2' C1' FZQ sing 131 n n C2' C3' FZQ sing 132 n n O3' C3' FZQ sing 133 n n C2 N3 FZQ sing 134 n n C2 N1 FZQ sing 135 n n C1' N1 FZQ sing 136 n n C1' O4' FZQ sing 137 n n N3 C4 FZQ doub 138 n n C3' C4' FZQ sing 139 n n N1 C6 FZQ sing 140 n n C4' O4' FZQ sing 141 n n C4' C5' FZQ sing 142 n n C4 N4 FZQ sing 143 n n C4 C5 FZQ sing 144 n n C6 C5 FZQ doub 145 n n C5' O5' FZQ sing 146 n n OG CB FZQ sing 147 n n O5' S FZQ sing 148 n n O2S S FZQ doub 149 n n CB CA FZQ sing 150 n n S N3S FZQ sing 151 n n S O1S FZQ doub 152 n n N3S C FZQ sing 153 n n C CA FZQ sing 154 n n C O FZQ doub 155 n n CA N FZQ sing 156 n n N H1 FZQ sing 157 n n N H2 FZQ sing 158 n n CA H4 FZQ sing 159 n n CB H5 FZQ sing 160 n n CB H6 FZQ sing 161 n n OG H7 FZQ sing 162 n n C1' H8 FZQ sing 163 n n C2' H9 FZQ sing 164 n n C3' H10 FZQ sing 165 n n C4' H11 FZQ sing 166 n n C5 H12 FZQ sing 167 n n C5' H13 FZQ sing 168 n n C5' H14 FZQ sing 169 n n C6 H15 FZQ sing 170 n n N3S H16 FZQ sing 171 n n N4 H17 FZQ sing 172 n n N4 H18 FZQ sing 173 n n O2' H19 FZQ sing 174 n n O3' H20 FZQ sing 175 n n # _atom_sites.entry_id 6HHZ _atom_sites.fract_transf_matrix[1][1] 0.011997 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011997 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004361 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 501 1 EDO EDO . C 2 EDO A 1 502 2 EDO EDO . D 2 EDO A 1 503 4 EDO EDO . E 3 FZQ A 1 504 1 FZQ SSC . F 4 CA A 1 505 1 CA CA . G 4 CA A 1 506 3 CA CA . H 4 CA A 1 507 4 CA CA . I 5 CL A 1 508 2 CL CL . J 6 1PE A 1 509 1 1PE 1PE . K 7 HOH A 1 601 14 HOH HOH . K 7 HOH A 2 602 27 HOH HOH . K 7 HOH A 3 603 23 HOH HOH . K 7 HOH A 4 604 49 HOH HOH . K 7 HOH A 5 605 9 HOH HOH . K 7 HOH A 6 606 70 HOH HOH . K 7 HOH A 7 607 59 HOH HOH . K 7 HOH A 8 608 44 HOH HOH . K 7 HOH A 9 609 29 HOH HOH . K 7 HOH A 10 610 107 HOH HOH . K 7 HOH A 11 611 3 HOH HOH . K 7 HOH A 12 612 35 HOH HOH . K 7 HOH A 13 613 85 HOH HOH . K 7 HOH A 14 614 24 HOH HOH . K 7 HOH A 15 615 75 HOH HOH . K 7 HOH A 16 616 100 HOH HOH . K 7 HOH A 17 617 58 HOH HOH . K 7 HOH A 18 618 46 HOH HOH . K 7 HOH A 19 619 81 HOH HOH . K 7 HOH A 20 620 13 HOH HOH . K 7 HOH A 21 621 51 HOH HOH . K 7 HOH A 22 622 148 HOH HOH . K 7 HOH A 23 623 53 HOH HOH . K 7 HOH A 24 624 87 HOH HOH . K 7 HOH A 25 625 8 HOH HOH . K 7 HOH A 26 626 79 HOH HOH . K 7 HOH A 27 627 11 HOH HOH . K 7 HOH A 28 628 10 HOH HOH . K 7 HOH A 29 629 1 HOH HOH . K 7 HOH A 30 630 133 HOH HOH . K 7 HOH A 31 631 143 HOH HOH . K 7 HOH A 32 632 111 HOH HOH . K 7 HOH A 33 633 41 HOH HOH . K 7 HOH A 34 634 37 HOH HOH . K 7 HOH A 35 635 176 HOH HOH . K 7 HOH A 36 636 157 HOH HOH . K 7 HOH A 37 637 5 HOH HOH . K 7 HOH A 38 638 22 HOH HOH . K 7 HOH A 39 639 31 HOH HOH . K 7 HOH A 40 640 34 HOH HOH . K 7 HOH A 41 641 99 HOH HOH . K 7 HOH A 42 642 16 HOH HOH . K 7 HOH A 43 643 43 HOH HOH . K 7 HOH A 44 644 106 HOH HOH . K 7 HOH A 45 645 64 HOH HOH . K 7 HOH A 46 646 132 HOH HOH . K 7 HOH A 47 647 68 HOH HOH . K 7 HOH A 48 648 142 HOH HOH . K 7 HOH A 49 649 12 HOH HOH . K 7 HOH A 50 650 17 HOH HOH . K 7 HOH A 51 651 32 HOH HOH . K 7 HOH A 52 652 150 HOH HOH . K 7 HOH A 53 653 130 HOH HOH . K 7 HOH A 54 654 33 HOH HOH . K 7 HOH A 55 655 138 HOH HOH . K 7 HOH A 56 656 120 HOH HOH . K 7 HOH A 57 657 74 HOH HOH . K 7 HOH A 58 658 83 HOH HOH . K 7 HOH A 59 659 78 HOH HOH . K 7 HOH A 60 660 67 HOH HOH . K 7 HOH A 61 661 137 HOH HOH . K 7 HOH A 62 662 71 HOH HOH . K 7 HOH A 63 663 47 HOH HOH . K 7 HOH A 64 664 39 HOH HOH . K 7 HOH A 65 665 97 HOH HOH . K 7 HOH A 66 666 2 HOH HOH . K 7 HOH A 67 667 19 HOH HOH . K 7 HOH A 68 668 109 HOH HOH . K 7 HOH A 69 669 52 HOH HOH . K 7 HOH A 70 670 56 HOH HOH . K 7 HOH A 71 671 127 HOH HOH . K 7 HOH A 72 672 82 HOH HOH . K 7 HOH A 73 673 112 HOH HOH . K 7 HOH A 74 674 4 HOH HOH . K 7 HOH A 75 675 164 HOH HOH . K 7 HOH A 76 676 155 HOH HOH . K 7 HOH A 77 677 124 HOH HOH . K 7 HOH A 78 678 113 HOH HOH . K 7 HOH A 79 679 179 HOH HOH . K 7 HOH A 80 680 40 HOH HOH . K 7 HOH A 81 681 25 HOH HOH . K 7 HOH A 82 682 96 HOH HOH . K 7 HOH A 83 683 90 HOH HOH . K 7 HOH A 84 684 159 HOH HOH . K 7 HOH A 85 685 98 HOH HOH . K 7 HOH A 86 686 54 HOH HOH . K 7 HOH A 87 687 21 HOH HOH . K 7 HOH A 88 688 117 HOH HOH . K 7 HOH A 89 689 6 HOH HOH . K 7 HOH A 90 690 60 HOH HOH . K 7 HOH A 91 691 77 HOH HOH . K 7 HOH A 92 692 15 HOH HOH . K 7 HOH A 93 693 7 HOH HOH . K 7 HOH A 94 694 50 HOH HOH . K 7 HOH A 95 695 161 HOH HOH . K 7 HOH A 96 696 103 HOH HOH . K 7 HOH A 97 697 146 HOH HOH . K 7 HOH A 98 698 105 HOH HOH . K 7 HOH A 99 699 141 HOH HOH . K 7 HOH A 100 700 110 HOH HOH . K 7 HOH A 101 701 170 HOH HOH . K 7 HOH A 102 702 119 HOH HOH . K 7 HOH A 103 703 149 HOH HOH . K 7 HOH A 104 704 134 HOH HOH . K 7 HOH A 105 705 42 HOH HOH . K 7 HOH A 106 706 168 HOH HOH . K 7 HOH A 107 707 169 HOH HOH . K 7 HOH A 108 708 140 HOH HOH . K 7 HOH A 109 709 26 HOH HOH . K 7 HOH A 110 710 118 HOH HOH . K 7 HOH A 111 711 114 HOH HOH . K 7 HOH A 112 712 125 HOH HOH . K 7 HOH A 113 713 72 HOH HOH . K 7 HOH A 114 714 116 HOH HOH . K 7 HOH A 115 715 173 HOH HOH . K 7 HOH A 116 716 88 HOH HOH . K 7 HOH A 117 717 66 HOH HOH . K 7 HOH A 118 718 154 HOH HOH . K 7 HOH A 119 719 104 HOH HOH . K 7 HOH A 120 720 62 HOH HOH . K 7 HOH A 121 721 55 HOH HOH . K 7 HOH A 122 722 69 HOH HOH . K 7 HOH A 123 723 28 HOH HOH . K 7 HOH A 124 724 122 HOH HOH . K 7 HOH A 125 725 145 HOH HOH . K 7 HOH A 126 726 48 HOH HOH . K 7 HOH A 127 727 93 HOH HOH . K 7 HOH A 128 728 131 HOH HOH . K 7 HOH A 129 729 38 HOH HOH . K 7 HOH A 130 730 18 HOH HOH . K 7 HOH A 131 731 152 HOH HOH . K 7 HOH A 132 732 166 HOH HOH . K 7 HOH A 133 733 30 HOH HOH . K 7 HOH A 134 734 65 HOH HOH . K 7 HOH A 135 735 89 HOH HOH . K 7 HOH A 136 736 63 HOH HOH . K 7 HOH A 137 737 158 HOH HOH . K 7 HOH A 138 738 135 HOH HOH . K 7 HOH A 139 739 167 HOH HOH . K 7 HOH A 140 740 57 HOH HOH . K 7 HOH A 141 741 177 HOH HOH . K 7 HOH A 142 742 123 HOH HOH . K 7 HOH A 143 743 92 HOH HOH . K 7 HOH A 144 744 160 HOH HOH . K 7 HOH A 145 745 162 HOH HOH . K 7 HOH A 146 746 101 HOH HOH . K 7 HOH A 147 747 151 HOH HOH . K 7 HOH A 148 748 91 HOH HOH . K 7 HOH A 149 749 95 HOH HOH . K 7 HOH A 150 750 139 HOH HOH . K 7 HOH A 151 751 163 HOH HOH . K 7 HOH A 152 752 45 HOH HOH . K 7 HOH A 153 753 126 HOH HOH . K 7 HOH A 154 754 20 HOH HOH . K 7 HOH A 155 755 102 HOH HOH . K 7 HOH A 156 756 115 HOH HOH . K 7 HOH A 157 757 144 HOH HOH . K 7 HOH A 158 758 153 HOH HOH . K 7 HOH A 159 759 61 HOH HOH . K 7 HOH A 160 760 178 HOH HOH . K 7 HOH A 161 761 108 HOH HOH . K 7 HOH A 162 762 175 HOH HOH . K 7 HOH A 163 763 84 HOH HOH . K 7 HOH A 164 764 182 HOH HOH . K 7 HOH A 165 765 174 HOH HOH . K 7 HOH A 166 766 180 HOH HOH . K 7 HOH A 167 767 147 HOH HOH . K 7 HOH A 168 768 181 HOH HOH . K 7 HOH A 169 769 36 HOH HOH . K 7 HOH A 170 770 76 HOH HOH . K 7 HOH A 171 771 156 HOH HOH . K 7 HOH A 172 772 73 HOH HOH . K 7 HOH A 173 773 86 HOH HOH . K 7 HOH A 174 774 128 HOH HOH . K 7 HOH A 175 775 121 HOH HOH . K 7 HOH A 176 776 165 HOH HOH . K 7 HOH A 177 777 94 HOH HOH . K 7 HOH A 178 778 171 HOH HOH . K 7 HOH A 179 779 136 HOH HOH . K 7 HOH A 180 780 172 HOH HOH . K 7 HOH A 181 781 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1S FZQ . . . E 3 -9.08 -32.651 -4.028 1 43.32 ? O1S FZQ 504 A 1 HETATM 2 O O2S FZQ . . . E 3 -6.609 -32.614 -3.938 1 48.35 ? O2S FZQ 504 A 1 HETATM 3 N N FZQ . . . E 3 -9.228 -28.855 -7.99 1 42.13 ? N FZQ 504 A 1 HETATM 4 C CA FZQ . . . E 3 -8.151 -29.718 -7.496 1 43.72 ? CA FZQ 504 A 1 HETATM 5 C C FZQ . . . E 3 -8.598 -30.347 -6.176 1 45.54 ? C FZQ 504 A 1 HETATM 6 O O FZQ . . . E 3 -9.613 -30.01 -5.561 1 44.97 ? O FZQ 504 A 1 HETATM 7 C CB FZQ . . . E 3 -6.914 -28.852 -7.266 1 44.19 ? CB FZQ 504 A 1 HETATM 8 O OG FZQ . . . E 3 -7.112 -27.957 -6.178 1 43.36 ? OG FZQ 504 A 1 HETATM 9 C C1' FZQ . . . E 3 -7.023 -29.313 0.348 1 46.02 ? C1' FZQ 504 A 1 HETATM 10 C C2 FZQ . . . E 3 -8.512 -29.167 2.334 1 41.87 ? C2 FZQ 504 A 1 HETATM 11 C C2' FZQ . . . E 3 -5.774 -30.222 0.236 1 47.72 ? C2' FZQ 504 A 1 HETATM 12 C C3' FZQ . . . E 3 -5.717 -30.549 -1.263 1 46.24 ? C3' FZQ 504 A 1 HETATM 13 C C4 FZQ . . . E 3 -10.251 -30.731 2.64 1 40.99 ? C4 FZQ 504 A 1 HETATM 14 C C4' FZQ . . . E 3 -6.441 -29.365 -1.891 1 43.89 ? C4' FZQ 504 A 1 HETATM 15 C C5 FZQ . . . E 3 -9.874 -31.443 1.461 1 41.85 ? C5 FZQ 504 A 1 HETATM 16 C C5' FZQ . . . E 3 -7.003 -29.615 -3.269 1 42.76 ? C5' FZQ 504 A 1 HETATM 17 C C6 FZQ . . . E 3 -8.824 -30.978 0.763 1 42.37 ? C6 FZQ 504 A 1 HETATM 18 N N1 FZQ . . . E 3 -8.133 -29.852 1.169 1 43.16 ? N1 FZQ 504 A 1 HETATM 19 N N3 FZQ . . . E 3 -9.576 -29.637 3.051 1 40.76 ? N3 FZQ 504 A 1 HETATM 20 N N3S FZQ . . . E 3 -7.765 -31.375 -5.651 1 46.78 ? N3S FZQ 504 A 1 HETATM 21 N N4 FZQ . . . E 3 -11.324 -31.109 3.339 1 39.78 ? N4 FZQ 504 A 1 HETATM 22 O O2 FZQ . . . E 3 -7.892 -28.153 2.666 1 42.85 ? O2 FZQ 504 A 1 HETATM 23 O O2' FZQ . . . E 3 -4.603 -29.5 0.605 1 50.21 ? O2' FZQ 504 A 1 HETATM 24 O O3' FZQ . . . E 3 -4.389 -30.636 -1.766 1 44.72 ? O3' FZQ 504 A 1 HETATM 25 O O4' FZQ . . . E 3 -7.507 -29.079 -0.967 1 44.88 ? O4' FZQ 504 A 1 HETATM 26 O O5' FZQ . . . E 3 -7.957 -30.721 -3.168 1 44.18 ? O5' FZQ 504 A 1 HETATM 27 S S FZQ . . . E 3 -7.847 -31.96 -4.169 1 44.51 ? S FZQ 504 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #