data_6HI0 # _model_server_result.job_id 7scJ-5TNcxJriaLXmj9y-A _model_server_result.datetime_utc '2024-11-24 14:50:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hi0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 6HI0 # _exptl.entry_id 6HI0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HI0 _cell.length_a 84.321 _cell.length_b 84.321 _cell.length_c 229.998 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HI0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 254 A ASP 254 1_555 F CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc2 F CA CA . A CA 505 1_555 I O HOH . A HOH 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc3 F CA CA . A CA 505 1_555 I O HOH . A HOH 636 5_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? metalc ? metalc4 F CA CA . A CA 505 1_555 I O HOH . A HOH 637 5_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc5 F CA CA . A CA 505 1_555 I O HOH . A HOH 646 5_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc6 F CA CA . A CA 505 1_555 I O HOH . A HOH 651 5_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc7 F CA CA . A CA 505 1_555 I O HOH . A HOH 672 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6HI0 _atom_sites.fract_transf_matrix[1][1] 0.011859 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011859 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004348 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 501 1 EDO EDO . C 2 EDO A 1 502 2 EDO EDO . D 2 EDO A 1 503 4 EDO EDO . E 3 FZK A 1 504 1 FZK SSU . F 4 CA A 1 505 1 CA CA . G 4 CA A 1 506 2 CA CA . H 4 CA A 1 507 3 CA CA . I 5 HOH A 1 601 9 HOH HOH . I 5 HOH A 2 602 46 HOH HOH . I 5 HOH A 3 603 19 HOH HOH . I 5 HOH A 4 604 49 HOH HOH . I 5 HOH A 5 605 7 HOH HOH . I 5 HOH A 6 606 1 HOH HOH . I 5 HOH A 7 607 3 HOH HOH . I 5 HOH A 8 608 6 HOH HOH . I 5 HOH A 9 609 2 HOH HOH . I 5 HOH A 10 610 64 HOH HOH . I 5 HOH A 11 611 60 HOH HOH . I 5 HOH A 12 612 25 HOH HOH . I 5 HOH A 13 613 68 HOH HOH . I 5 HOH A 14 614 13 HOH HOH . I 5 HOH A 15 615 18 HOH HOH . I 5 HOH A 16 616 56 HOH HOH . I 5 HOH A 17 617 29 HOH HOH . I 5 HOH A 18 618 74 HOH HOH . I 5 HOH A 19 619 33 HOH HOH . I 5 HOH A 20 620 53 HOH HOH . I 5 HOH A 21 621 15 HOH HOH . I 5 HOH A 22 622 28 HOH HOH . I 5 HOH A 23 623 10 HOH HOH . I 5 HOH A 24 624 11 HOH HOH . I 5 HOH A 25 625 54 HOH HOH . I 5 HOH A 26 626 14 HOH HOH . I 5 HOH A 27 627 51 HOH HOH . I 5 HOH A 28 628 20 HOH HOH . I 5 HOH A 29 629 30 HOH HOH . I 5 HOH A 30 630 35 HOH HOH . I 5 HOH A 31 631 48 HOH HOH . I 5 HOH A 32 632 52 HOH HOH . I 5 HOH A 33 633 8 HOH HOH . I 5 HOH A 34 634 62 HOH HOH . I 5 HOH A 35 635 40 HOH HOH . I 5 HOH A 36 636 41 HOH HOH . I 5 HOH A 37 637 37 HOH HOH . I 5 HOH A 38 638 12 HOH HOH . I 5 HOH A 39 639 22 HOH HOH . I 5 HOH A 40 640 75 HOH HOH . I 5 HOH A 41 641 24 HOH HOH . I 5 HOH A 42 642 45 HOH HOH . I 5 HOH A 43 643 34 HOH HOH . I 5 HOH A 44 644 55 HOH HOH . I 5 HOH A 45 645 17 HOH HOH . I 5 HOH A 46 646 39 HOH HOH . I 5 HOH A 47 647 27 HOH HOH . I 5 HOH A 48 648 59 HOH HOH . I 5 HOH A 49 649 57 HOH HOH . I 5 HOH A 50 650 5 HOH HOH . I 5 HOH A 51 651 42 HOH HOH . I 5 HOH A 52 652 61 HOH HOH . I 5 HOH A 53 653 4 HOH HOH . I 5 HOH A 54 654 65 HOH HOH . I 5 HOH A 55 655 50 HOH HOH . I 5 HOH A 56 656 71 HOH HOH . I 5 HOH A 57 657 36 HOH HOH . I 5 HOH A 58 658 44 HOH HOH . I 5 HOH A 59 659 23 HOH HOH . I 5 HOH A 60 660 70 HOH HOH . I 5 HOH A 61 661 21 HOH HOH . I 5 HOH A 62 662 31 HOH HOH . I 5 HOH A 63 663 73 HOH HOH . I 5 HOH A 64 664 69 HOH HOH . I 5 HOH A 65 665 16 HOH HOH . I 5 HOH A 66 666 32 HOH HOH . I 5 HOH A 67 667 72 HOH HOH . I 5 HOH A 68 668 66 HOH HOH . I 5 HOH A 69 669 67 HOH HOH . I 5 HOH A 70 670 76 HOH HOH . I 5 HOH A 71 671 58 HOH HOH . I 5 HOH A 72 672 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 -12.559 -34.013 -6.058 1 80.6 ? C1 EDO 503 A 1 HETATM 2 O O1 EDO . . . D 2 -12.667 -33.744 -7.448 1 81.91 ? O1 EDO 503 A 1 HETATM 3 C C2 EDO . . . D 2 -13.87 -33.627 -5.343 1 81.33 ? C2 EDO 503 A 1 HETATM 4 O O2 EDO . . . D 2 -14.969 -34.175 -6.054 1 82.78 ? O2 EDO 503 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 547 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 4 #