data_6HI0 # _model_server_result.job_id O05Q6PZKLPRPbnnuCVjGGg _model_server_result.datetime_utc '2024-11-24 15:05:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hi0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 6HI0 # _exptl.entry_id 6HI0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 410.357 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-(N-(L-seryl)-Sulfamoyl)uridine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HI0 _cell.length_a 84.321 _cell.length_b 84.321 _cell.length_c 229.998 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HI0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 254 A ASP 254 1_555 F CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc2 F CA CA . A CA 505 1_555 I O HOH . A HOH 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc3 F CA CA . A CA 505 1_555 I O HOH . A HOH 636 5_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? metalc ? metalc4 F CA CA . A CA 505 1_555 I O HOH . A HOH 637 5_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc5 F CA CA . A CA 505 1_555 I O HOH . A HOH 646 5_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc6 F CA CA . A CA 505 1_555 I O HOH . A HOH 651 5_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc7 F CA CA . A CA 505 1_555 I O HOH . A HOH 672 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? # _chem_comp.formula 'C12 H18 N4 O10 S' _chem_comp.formula_weight 410.357 _chem_comp.id FZK _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-(N-(L-seryl)-Sulfamoyl)uridine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2' C2' FZK sing 92 n n O2 C2 FZK doub 93 n n C2' C1' FZK sing 94 n n C2' C3' FZK sing 95 n n C2 N3 FZK sing 96 n n C2 N1 FZK sing 97 n n C1' N1 FZK sing 98 n n C1' O4' FZK sing 99 n n O3' C3' FZK sing 100 n n N3 C4 FZK sing 101 n n N1 C6 FZK sing 102 n n C3' C4' FZK sing 103 n n C4' O4' FZK sing 104 n n C4' C5' FZK sing 105 n n C4 O4 FZK doub 106 n n C4 C5 FZK sing 107 n n C6 C5 FZK doub 108 n n C5' O5' FZK sing 109 n n OG CB FZK sing 110 n n O5' S FZK sing 111 n n O1S S FZK doub 112 n n CB CA FZK sing 113 n n S N3S FZK sing 114 n n S O2S FZK doub 115 n n N3S C FZK sing 116 n n C CA FZK sing 117 n n C O FZK doub 118 n n CA N FZK sing 119 n n O2' H1 FZK sing 120 n n C2' H2 FZK sing 121 n n C1' H3 FZK sing 122 n n C4' H4 FZK sing 123 n n C5' H5 FZK sing 124 n n C5' H6 FZK sing 125 n n C3' H7 FZK sing 126 n n O3' H8 FZK sing 127 n n C6 H9 FZK sing 128 n n C5 H10 FZK sing 129 n n N3 H11 FZK sing 130 n n CA H12 FZK sing 131 n n CB H13 FZK sing 132 n n CB H14 FZK sing 133 n n N H15 FZK sing 134 n n N H16 FZK sing 135 n n N3S H18 FZK sing 136 n n OG H19 FZK sing 137 n n # _atom_sites.entry_id 6HI0 _atom_sites.fract_transf_matrix[1][1] 0.011859 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011859 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004348 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 501 1 EDO EDO . C 2 EDO A 1 502 2 EDO EDO . D 2 EDO A 1 503 4 EDO EDO . E 3 FZK A 1 504 1 FZK SSU . F 4 CA A 1 505 1 CA CA . G 4 CA A 1 506 2 CA CA . H 4 CA A 1 507 3 CA CA . I 5 HOH A 1 601 9 HOH HOH . I 5 HOH A 2 602 46 HOH HOH . I 5 HOH A 3 603 19 HOH HOH . I 5 HOH A 4 604 49 HOH HOH . I 5 HOH A 5 605 7 HOH HOH . I 5 HOH A 6 606 1 HOH HOH . I 5 HOH A 7 607 3 HOH HOH . I 5 HOH A 8 608 6 HOH HOH . I 5 HOH A 9 609 2 HOH HOH . I 5 HOH A 10 610 64 HOH HOH . I 5 HOH A 11 611 60 HOH HOH . I 5 HOH A 12 612 25 HOH HOH . I 5 HOH A 13 613 68 HOH HOH . I 5 HOH A 14 614 13 HOH HOH . I 5 HOH A 15 615 18 HOH HOH . I 5 HOH A 16 616 56 HOH HOH . I 5 HOH A 17 617 29 HOH HOH . I 5 HOH A 18 618 74 HOH HOH . I 5 HOH A 19 619 33 HOH HOH . I 5 HOH A 20 620 53 HOH HOH . I 5 HOH A 21 621 15 HOH HOH . I 5 HOH A 22 622 28 HOH HOH . I 5 HOH A 23 623 10 HOH HOH . I 5 HOH A 24 624 11 HOH HOH . I 5 HOH A 25 625 54 HOH HOH . I 5 HOH A 26 626 14 HOH HOH . I 5 HOH A 27 627 51 HOH HOH . I 5 HOH A 28 628 20 HOH HOH . I 5 HOH A 29 629 30 HOH HOH . I 5 HOH A 30 630 35 HOH HOH . I 5 HOH A 31 631 48 HOH HOH . I 5 HOH A 32 632 52 HOH HOH . I 5 HOH A 33 633 8 HOH HOH . I 5 HOH A 34 634 62 HOH HOH . I 5 HOH A 35 635 40 HOH HOH . I 5 HOH A 36 636 41 HOH HOH . I 5 HOH A 37 637 37 HOH HOH . I 5 HOH A 38 638 12 HOH HOH . I 5 HOH A 39 639 22 HOH HOH . I 5 HOH A 40 640 75 HOH HOH . I 5 HOH A 41 641 24 HOH HOH . I 5 HOH A 42 642 45 HOH HOH . I 5 HOH A 43 643 34 HOH HOH . I 5 HOH A 44 644 55 HOH HOH . I 5 HOH A 45 645 17 HOH HOH . I 5 HOH A 46 646 39 HOH HOH . I 5 HOH A 47 647 27 HOH HOH . I 5 HOH A 48 648 59 HOH HOH . I 5 HOH A 49 649 57 HOH HOH . I 5 HOH A 50 650 5 HOH HOH . I 5 HOH A 51 651 42 HOH HOH . I 5 HOH A 52 652 61 HOH HOH . I 5 HOH A 53 653 4 HOH HOH . I 5 HOH A 54 654 65 HOH HOH . I 5 HOH A 55 655 50 HOH HOH . I 5 HOH A 56 656 71 HOH HOH . I 5 HOH A 57 657 36 HOH HOH . I 5 HOH A 58 658 44 HOH HOH . I 5 HOH A 59 659 23 HOH HOH . I 5 HOH A 60 660 70 HOH HOH . I 5 HOH A 61 661 21 HOH HOH . I 5 HOH A 62 662 31 HOH HOH . I 5 HOH A 63 663 73 HOH HOH . I 5 HOH A 64 664 69 HOH HOH . I 5 HOH A 65 665 16 HOH HOH . I 5 HOH A 66 666 32 HOH HOH . I 5 HOH A 67 667 72 HOH HOH . I 5 HOH A 68 668 66 HOH HOH . I 5 HOH A 69 669 67 HOH HOH . I 5 HOH A 70 670 76 HOH HOH . I 5 HOH A 71 671 58 HOH HOH . I 5 HOH A 72 672 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2' FZK . . . E 3 -5.301 -30.479 0.702 1 56.29 ? O2' FZK 504 A 1 HETATM 2 C C2' FZK . . . E 3 -6.496 -31.092 0.245 1 55.79 ? C2' FZK 504 A 1 HETATM 3 C C1' FZK . . . E 3 -7.697 -30.136 0.372 1 55.05 ? C1' FZK 504 A 1 HETATM 4 O O4' FZK . . . E 3 -8.191 -29.884 -0.934 1 56.74 ? O4' FZK 504 A 1 HETATM 5 C C4' FZK . . . E 3 -7.165 -30.209 -1.886 1 55.16 ? C4' FZK 504 A 1 HETATM 6 C C5' FZK . . . E 3 -7.794 -30.5 -3.221 1 56.33 ? C5' FZK 504 A 1 HETATM 7 O O5' FZK . . . E 3 -8.721 -31.625 -3.061 1 56.96 ? O5' FZK 504 A 1 HETATM 8 C C3' FZK . . . E 3 -6.42 -31.384 -1.262 1 57.69 ? C3' FZK 504 A 1 HETATM 9 O O3' FZK . . . E 3 -5.071 -31.431 -1.709 1 57.83 ? O3' FZK 504 A 1 HETATM 10 N N1 FZK . . . E 3 -8.802 -30.669 1.207 1 53.65 ? N1 FZK 504 A 1 HETATM 11 C C6 FZK . . . E 3 -9.445 -31.852 0.867 1 52.83 ? C6 FZK 504 A 1 HETATM 12 C C5 FZK . . . E 3 -10.39 -32.406 1.65 1 53.54 ? C5 FZK 504 A 1 HETATM 13 C C4 FZK . . . E 3 -10.766 -31.76 2.879 1 54.72 ? C4 FZK 504 A 1 HETATM 14 O O4 FZK . . . E 3 -11.603 -32.19 3.697 1 55.21 ? O4 FZK 504 A 1 HETATM 15 N N3 FZK . . . E 3 -10.105 -30.564 3.135 1 51.18 ? N3 FZK 504 A 1 HETATM 16 C C2 FZK . . . E 3 -9.13 -29.977 2.36 1 50.83 ? C2 FZK 504 A 1 HETATM 17 O O2 FZK . . . E 3 -8.594 -28.924 2.683 1 51.86 ? O2 FZK 504 A 1 HETATM 18 C C FZK . . . E 3 -9.382 -31.227 -6.093 1 55.47 ? C FZK 504 A 1 HETATM 19 C CA FZK . . . E 3 -8.886 -30.562 -7.364 1 52.99 ? CA FZK 504 A 1 HETATM 20 C CB FZK . . . E 3 -7.601 -29.788 -7.081 1 53.3 ? CB FZK 504 A 1 HETATM 21 N N FZK . . . E 3 -10.001 -29.766 -7.896 1 50.1 ? N FZK 504 A 1 HETATM 22 N N3S FZK . . . E 3 -8.557 -32.253 -5.557 1 58.88 ? N3S FZK 504 A 1 HETATM 23 O O FZK . . . E 3 -10.427 -30.92 -5.519 1 57.1 ? O FZK 504 A 1 HETATM 24 O O1S FZK . . . E 3 -7.41 -33.552 -3.876 1 56.7 ? O1S FZK 504 A 1 HETATM 25 O O2S FZK . . . E 3 -9.882 -33.509 -3.95 1 58.61 ? O2S FZK 504 A 1 HETATM 26 O OG FZK . . . E 3 -7.821 -28.765 -6.119 1 54.38 ? OG FZK 504 A 1 HETATM 27 S S FZK . . . E 3 -8.628 -32.855 -4.077 1 58.61 ? S FZK 504 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #