data_6HIS # _model_server_result.job_id Tfe3TX2OQacefa8OPFngSg _model_server_result.datetime_utc '2024-11-22 01:03:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6his # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":501}' # _entry.id 6HIS # _exptl.entry_id 6HIS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 284.353 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3-ENDO)-8-METHYL-8-AZABICYCLO[3.2.1]OCT-3-YL 1H-INDOLE-3-CARBOXYLATE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HIS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HIS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 U N N ? 4 V N N ? 4 W N N ? 4 X N N ? 4 Y N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n F NAG 1 F 1 NAG A 501 NAG 2 n F NAG 2 F 2 NAG A 502 NAG 3 n G NAG 1 G 1 NAG A 505 NAG 3 n G NAG 2 G 2 NAG A 504 NAG 3 n G BMA 3 G 3 BMA A 503 BMA 2 n H NAG 1 H 1 NAG A 506 NAG 2 n H NAG 2 H 2 NAG A 507 NAG 2 n I NAG 1 I 1 NAG E 501 NAG 2 n I NAG 2 I 2 NAG E 502 NAG 3 n J NAG 1 J 1 NAG E 505 NAG 3 n J NAG 2 J 2 NAG E 504 NAG 3 n J BMA 3 J 3 BMA E 503 BMA 2 n K NAG 1 K 1 NAG E 506 NAG 2 n K NAG 2 K 2 NAG E 507 NAG 2 n L NAG 1 L 1 NAG B 501 NAG 2 n L NAG 2 L 2 NAG B 502 NAG 3 n M NAG 1 M 1 NAG B 505 NAG 3 n M NAG 2 M 2 NAG B 504 NAG 3 n M BMA 3 M 3 BMA B 503 BMA 2 n N NAG 1 N 1 NAG B 506 NAG 2 n N NAG 2 N 2 NAG B 507 NAG 2 n O NAG 1 O 1 NAG C 501 NAG 2 n O NAG 2 O 2 NAG C 502 NAG 3 n P NAG 1 P 1 NAG C 505 NAG 3 n P NAG 2 P 2 NAG C 504 NAG 3 n P BMA 3 P 3 BMA C 503 BMA 2 n Q NAG 1 Q 1 NAG C 506 NAG 2 n Q NAG 2 Q 2 NAG C 507 NAG 2 n R NAG 1 R 1 NAG D 501 NAG 2 n R NAG 2 R 2 NAG D 502 NAG 3 n S NAG 1 S 1 NAG D 505 NAG 3 n S NAG 2 S 2 NAG D 504 NAG 3 n S BMA 3 S 3 BMA D 503 BMA 2 n T NAG 1 T 1 NAG D 506 NAG 2 n T NAG 2 T 2 NAG D 507 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 128 A CYS 135 1_555 A SG CYS 142 A CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 128 E CYS 135 1_555 B SG CYS 142 E CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 C SG CYS 128 B CYS 135 1_555 C SG CYS 142 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 D SG CYS 128 C CYS 135 1_555 D SG CYS 142 C CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 E SG CYS 128 D CYS 135 1_555 E SG CYS 142 D CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 75 A ASN 82 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 A ND2 ASN 141 A ASN 148 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale3 A ND2 ASN 157 A ASN 164 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale4 B ND2 ASN 75 E ASN 82 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale5 B ND2 ASN 141 E ASN 148 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale6 B ND2 ASN 157 E ASN 164 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale7 C ND2 ASN 75 B ASN 82 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale8 C ND2 ASN 141 B ASN 148 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale9 C ND2 ASN 157 B ASN 164 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale10 D ND2 ASN 75 C ASN 82 1_555 O C1 NAG . O NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale11 D ND2 ASN 141 C ASN 148 1_555 Q C1 NAG . Q NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale12 D ND2 ASN 157 C ASN 164 1_555 P C1 NAG . P NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale13 E ND2 ASN 75 D ASN 82 1_555 R C1 NAG . R NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale14 E ND2 ASN 141 D ASN 148 1_555 T C1 NAG . T NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale15 E ND2 ASN 157 D ASN 164 1_555 S C1 NAG . S NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale16 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale17 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale18 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale19 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale20 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale21 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale22 J O4 NAG . J NAG 2 1_555 J C1 BMA . J BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale23 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale24 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale25 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale26 M O4 NAG . M NAG 2 1_555 M C1 BMA . M BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale27 N O4 NAG . N NAG 1 1_555 N C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale28 O O4 NAG . O NAG 1 1_555 O C1 NAG . O NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale29 P O4 NAG . P NAG 1 1_555 P C1 NAG . P NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale30 P O4 NAG . P NAG 2 1_555 P C1 BMA . P BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale31 Q O4 NAG . Q NAG 1 1_555 Q C1 NAG . Q NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale32 R O4 NAG . R NAG 1 1_555 R C1 NAG . R NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale33 S O4 NAG . S NAG 1 1_555 S C1 NAG . S NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale34 S O4 NAG . S NAG 2 1_555 S C1 BMA . S BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale35 T O4 NAG . T NAG 1 1_555 T C1 NAG . T NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? # _chem_comp.formula 'C17 H20 N2 O2' _chem_comp.formula_weight 284.353 _chem_comp.id TKT _chem_comp.mon_nstd_flag . _chem_comp.name '(3-ENDO)-8-METHYL-8-AZABICYCLO[3.2.1]OCT-3-YL 1H-INDOLE-3-CARBOXYLATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms TROPISETRON # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C9 TKT sing 358 n n C12 C11 TKT doub 359 n y C12 C16 TKT sing 360 n y O4 C9 TKT doub 361 n n C8 N1 TKT sing 362 n n C9 O3 TKT sing 363 n n C11 N10 TKT sing 364 n y O3 C3 TKT sing 365 n n C7 C6 TKT sing 366 n n C7 C1 TKT sing 367 n n C6 C5 TKT sing 368 n n N1 C5 TKT sing 369 n n N1 C1 TKT sing 370 n n C5 C4 TKT sing 371 n n C4 C3 TKT sing 372 n n C1 C2 TKT sing 373 n n C2 C3 TKT sing 374 n n C13 C18 TKT doub 375 n y C13 C21 TKT sing 376 n y C15 C16 TKT sing 377 n y C15 N10 TKT sing 378 n y C15 C21 TKT doub 379 n y C16 C17 TKT doub 380 n y C17 C18 TKT sing 381 n y C11 H11 TKT sing 382 n n C8 H81C TKT sing 383 n n C8 H82C TKT sing 384 n n C8 H83C TKT sing 385 n n N10 H10 TKT sing 386 n n C3 H3 TKT sing 387 n n C7 H71C TKT sing 388 n n C7 H72C TKT sing 389 n n C6 H61C TKT sing 390 n n C6 H62C TKT sing 391 n n C1 H1 TKT sing 392 n n C5 H5 TKT sing 393 n n C4 H41C TKT sing 394 n n C4 H42C TKT sing 395 n n C2 H21C TKT sing 396 n n C2 H22C TKT sing 397 n n C13 H13 TKT sing 398 n n C18 H18 TKT sing 399 n n C21 H21 TKT sing 400 n n C17 H17 TKT sing 401 n n # _atom_sites.entry_id 6HIS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 4 TKT A 1 501 902 TKT TKT . V 4 TKT E 1 501 902 TKT TKT . W 4 TKT B 1 501 902 TKT TKT . X 4 TKT C 1 501 902 TKT TKT . Y 4 TKT D 1 501 902 TKT TKT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 TKT . . . Y 4 131.298 150.888 150.697 1 55.83 ? C12 TKT 501 D 1 HETATM 2 O O4 TKT . . . Y 4 131.878 149.093 152.09 1 55.83 ? O4 TKT 501 D 1 HETATM 3 C C8 TKT . . . Y 4 137.849 147.47 151.774 1 55.83 ? C8 TKT 501 D 1 HETATM 4 C C9 TKT . . . Y 4 132.264 149.874 151.295 1 55.83 ? C9 TKT 501 D 1 HETATM 5 C C11 TKT . . . Y 4 130.585 150.755 149.514 1 55.83 ? C11 TKT 501 D 1 HETATM 6 O O3 TKT . . . Y 4 133.606 149.869 150.909 1 55.83 ? O3 TKT 501 D 1 HETATM 7 C C7 TKT . . . Y 4 136.095 149.249 152.918 1 55.83 ? C7 TKT 501 D 1 HETATM 8 C C6 TKT . . . Y 4 136.649 149.987 151.658 1 55.83 ? C6 TKT 501 D 1 HETATM 9 N N1 TKT . . . Y 4 136.61 147.72 151.29 1 55.83 ? N1 TKT 501 D 1 HETATM 10 C C5 TKT . . . Y 4 136.655 148.791 150.586 1 55.83 ? C5 TKT 501 D 1 HETATM 11 C C4 TKT . . . Y 4 135.425 148.946 149.686 1 55.83 ? C4 TKT 501 D 1 HETATM 12 C C1 TKT . . . Y 4 135.788 147.811 152.274 1 55.83 ? C1 TKT 501 D 1 HETATM 13 C C2 TKT . . . Y 4 134.318 147.782 151.837 1 55.83 ? C2 TKT 501 D 1 HETATM 14 C C3 TKT . . . Y 4 134.051 148.708 150.525 1 55.83 ? C3 TKT 501 D 1 HETATM 15 C C13 TKT . . . Y 4 129.878 154.684 151.769 1 55.83 ? C13 TKT 501 D 1 HETATM 16 C C15 TKT . . . Y 4 130.053 152.711 150.363 1 55.83 ? C15 TKT 501 D 1 HETATM 17 C C16 TKT . . . Y 4 130.944 152.154 151.233 1 55.83 ? C16 TKT 501 D 1 HETATM 18 C C17 TKT . . . Y 4 131.322 152.86 152.399 1 55.83 ? C17 TKT 501 D 1 HETATM 19 C C18 TKT . . . Y 4 130.788 154.117 152.658 1 55.83 ? C18 TKT 501 D 1 HETATM 20 N N10 TKT . . . Y 4 129.858 151.843 149.337 1 55.83 ? N10 TKT 501 D 1 HETATM 21 C C21 TKT . . . Y 4 129.508 153.991 150.626 1 55.83 ? C21 TKT 501 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 61 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 21 #