data_6HIZ # _model_server_result.job_id gMxtPY-YqcFAtSlVaJPl1g _model_server_result.datetime_utc '2024-11-22 01:01:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hiz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EA","auth_seq_id":501}' # _entry.id 6HIZ # _exptl.entry_id 6HIZ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 31 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HIZ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HIZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 28-meric _pdbx_struct_assembly.oligomeric_count 28 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 31 _struct_asym.id EA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 W OG SER 156 Cg SER 156 1_555 FA MG MG . Cg MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc2 EA O3G GTP . Cg GTP 501 1_555 FA MG MG . Cg MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc3 EA O2B GTP . Cg GTP 501 1_555 FA MG MG . Cg MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc4 FA MG MG . Cg MG 502 1_555 JA O HOH . Cg HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc5 FA MG MG . Cg MG 502 1_555 JA O HOH . Cg HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc6 FA MG MG . Cg MG 502 1_555 JA O HOH . Cg HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? hydrog 'U-A PAIR' hydrog1 Z O2 U 398 CA U 398 1_555 Z N6 A 534 CA A 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 Z N3 U 402 CA U 402 1_555 Z N1 A 526 CA A 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 Z O4 U 402 CA U 402 1_555 Z N6 A 526 CA A 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 Z N3 U 403 CA U 403 1_555 Z N1 A 525 CA A 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 Z O4 U 403 CA U 403 1_555 Z N6 A 525 CA A 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 Z N3 U 404 CA U 404 1_555 Z N1 A 524 CA A 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 Z O4 U 404 CA U 404 1_555 Z N6 A 524 CA A 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 Z N1 A 405 CA A 405 1_555 Z N3 U 523 CA U 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 Z N6 A 405 CA A 405 1_555 Z O4 U 523 CA U 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 Z N3 U 406 CA U 406 1_555 Z N1 A 522 CA A 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 Z O4 U 406 CA U 406 1_555 Z N6 A 522 CA A 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-U MISPAIR' hydrog12 Z O2 U 440 CA U 440 1_555 Z N3 U 479 CA U 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-A MISPAIR' hydrog13 Z N2 G 441 CA G 441 1_555 Z N3 A 447 CA A 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-C MISPAIR' hydrog14 Z O4 U 443 CA U 443 1_555 Z N4 C 446 CA C 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-A MISPAIR' hydrog15 Z N4 C 446 CA C 446 1_555 Z N3 A 478 CA A 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-U MISPAIR' hydrog16 Z O4 U 451 CA U 451 1_555 Z N3 U 474 CA U 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-U MISPAIR' hydrog17 Z N2 G 455 CA G 455 1_555 Z O2 U 465 CA U 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 244 n n PG O2G GTP sing 245 n n PG O3G GTP sing 246 n n PG O3B GTP sing 247 n n O2G HOG2 GTP sing 248 n n O3G HOG3 GTP sing 249 n n O3B PB GTP sing 250 n n PB O1B GTP doub 251 n n PB O2B GTP sing 252 n n PB O3A GTP sing 253 n n O2B HOB2 GTP sing 254 n n O3A PA GTP sing 255 n n PA O1A GTP doub 256 n n PA O2A GTP sing 257 n n PA O5' GTP sing 258 n n O2A HOA2 GTP sing 259 n n O5' C5' GTP sing 260 n n C5' C4' GTP sing 261 n n C5' H5' GTP sing 262 n n C5' "H5''" GTP sing 263 n n C4' O4' GTP sing 264 n n C4' C3' GTP sing 265 n n C4' H4' GTP sing 266 n n O4' C1' GTP sing 267 n n C3' O3' GTP sing 268 n n C3' C2' GTP sing 269 n n C3' H3' GTP sing 270 n n O3' HO3' GTP sing 271 n n C2' O2' GTP sing 272 n n C2' C1' GTP sing 273 n n C2' H2' GTP sing 274 n n O2' HO2' GTP sing 275 n n C1' N9 GTP sing 276 n n C1' H1' GTP sing 277 n n N9 C8 GTP sing 278 n y N9 C4 GTP sing 279 n y C8 N7 GTP doub 280 n y C8 H8 GTP sing 281 n n N7 C5 GTP sing 282 n y C5 C6 GTP sing 283 n n C5 C4 GTP doub 284 n y C6 O6 GTP doub 285 n n C6 N1 GTP sing 286 n n N1 C2 GTP sing 287 n n N1 HN1 GTP sing 288 n n C2 N2 GTP sing 289 n n C2 N3 GTP doub 290 n n N2 HN21 GTP sing 291 n n N2 HN22 GTP sing 292 n n N3 C4 GTP sing 293 n n # _atom_sites.entry_id 6HIZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code CA 29 SPD DL 1 401 101 SPD SPD . DA 30 UTP DJ 1 401 200 UTP UTP . EA 31 GTP Cg 1 501 501 GTP GTP . FA 32 MG Cg 1 502 502 MG MG . GA 32 MG CA 1 701 1 MG MG . HA 32 MG CA 1 702 2 MG MG . IA 29 SPD CA 1 703 100 SPD SPD . JA 33 HOH Cg 1 601 503 HOH HOH . JA 33 HOH Cg 2 602 504 HOH HOH . JA 33 HOH Cg 3 603 505 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . EA 31 287.469 171.827 176.116 1 37.56 0 PG GTP 501 Cg 1 HETATM 2 O O1G GTP . . . EA 31 287.987 172.725 175.005 1 26.36 0 O1G GTP 501 Cg 1 HETATM 3 O O2G GTP . . . EA 31 287.064 172.532 177.399 1 107.58 -1 O2G GTP 501 Cg 1 HETATM 4 O O3G GTP . . . EA 31 288.561 170.921 176.606 1 25.6 0 O3G GTP 501 Cg 1 HETATM 5 O O3B GTP . . . EA 31 286.106 171.215 175.594 1 26.34 0 O3B GTP 501 Cg 1 HETATM 6 P PB GTP . . . EA 31 285.933 169.715 175.164 1 19.83 0 PB GTP 501 Cg 1 HETATM 7 O O1B GTP . . . EA 31 285.338 169.829 173.793 1 21.59 0 O1B GTP 501 Cg 1 HETATM 8 O O2B GTP . . . EA 31 287.226 168.909 175.182 1 85.61 -1 O2B GTP 501 Cg 1 HETATM 9 O O3A GTP . . . EA 31 284.907 169.118 176.225 1 30.55 0 O3A GTP 501 Cg 1 HETATM 10 P PA GTP . . . EA 31 284.972 167.624 176.779 1 35.47 0 PA GTP 501 Cg 1 HETATM 11 O O1A GTP . . . EA 31 284.59 166.632 175.727 1 57.25 -1 O1A GTP 501 Cg 1 HETATM 12 O O2A GTP . . . EA 31 286.202 167.298 177.579 1 36.71 0 O2A GTP 501 Cg 1 HETATM 13 O O5' GTP . . . EA 31 283.753 167.636 177.818 1 26.52 0 O5' GTP 501 Cg 1 HETATM 14 C C5' GTP . . . EA 31 282.444 167.323 177.376 1 13.72 0 C5' GTP 501 Cg 1 HETATM 15 C C4' GTP . . . EA 31 282.012 166.237 178.334 1 12.12 0 C4' GTP 501 Cg 1 HETATM 16 O O4' GTP . . . EA 31 280.787 165.739 177.876 1 17.13 0 O4' GTP 501 Cg 1 HETATM 17 C C3' GTP . . . EA 31 282.986 165.084 178.306 1 13.56 0 C3' GTP 501 Cg 1 HETATM 18 O O3' GTP . . . EA 31 283.719 165.076 179.491 1 20.12 0 O3' GTP 501 Cg 1 HETATM 19 C C2' GTP . . . EA 31 282.144 163.84 178.223 1 15.66 0 C2' GTP 501 Cg 1 HETATM 20 O O2' GTP . . . EA 31 281.925 163.311 179.503 1 20.75 0 O2' GTP 501 Cg 1 HETATM 21 C C1' GTP . . . EA 31 280.824 164.339 177.695 1 14.94 0 C1' GTP 501 Cg 1 HETATM 22 N N9 GTP . . . EA 31 280.882 164.128 176.258 1 12.84 0 N9 GTP 501 Cg 1 HETATM 23 C C8 GTP . . . EA 31 281.092 165.077 175.317 1 17.3 0 C8 GTP 501 Cg 1 HETATM 24 N N7 GTP . . . EA 31 281.089 164.518 174.107 1 25.61 0 N7 GTP 501 Cg 1 HETATM 25 C C5 GTP . . . EA 31 280.867 163.197 174.259 1 22.79 0 C5 GTP 501 Cg 1 HETATM 26 C C6 GTP . . . EA 31 280.758 162.161 173.332 1 20.31 0 C6 GTP 501 Cg 1 HETATM 27 O O6 GTP . . . EA 31 280.874 162.41 172.131 1 20.58 0 O6 GTP 501 Cg 1 HETATM 28 N N1 GTP . . . EA 31 280.525 160.893 173.799 1 16.32 0 N1 GTP 501 Cg 1 HETATM 29 C C2 GTP . . . EA 31 280.407 160.733 175.164 1 19.76 0 C2 GTP 501 Cg 1 HETATM 30 N N2 GTP . . . EA 31 280.182 159.554 175.699 1 32.59 0 N2 GTP 501 Cg 1 HETATM 31 N N3 GTP . . . EA 31 280.509 161.75 176.06 1 10.57 0 N3 GTP 501 Cg 1 HETATM 32 C C4 GTP . . . EA 31 280.738 162.963 175.614 1 8.71 0 C4 GTP 501 Cg 1 # _model_server_stats.io_time_ms 162 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 138 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 32 #