data_6HJ3 # _model_server_result.job_id kU0_sdUBH5CQsfnNjMzBGg _model_server_result.datetime_utc '2024-11-08 11:51:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hj3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"PA","auth_seq_id":401}' # _entry.id 6HJ3 # _exptl.entry_id 6HJ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 622.834 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIUNDECYL PHOSPHATIDYL CHOLINE' _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.08 _cell.angle_gamma 90 _cell.entry_id 6HJ3 _cell.length_a 181.51 _cell.length_b 132.65 _cell.length_c 159.86 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HJ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N ? 2 H N N ? 2 N N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 Z N N ? 2 AA N N ? 2 BA N N ? 2 IA N N ? 2 JA N N ? 2 PA N N ? 2 QA N N ? 2 RA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PRO 68 A PRO 68 1_555 L NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.17 ? metalc ? metalc2 A O ILE 71 A ILE 71 1_555 L NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc3 XA O HOH . A HOH 501 1_555 R NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc4 B O PRO 68 B PRO 68 1_555 W NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? metalc ? metalc5 B O ILE 71 B ILE 71 1_555 W NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc6 C O PRO 68 C PRO 68 1_555 DA NA NA . C NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.087 ? metalc ? metalc7 C O ILE 71 C ILE 71 1_555 DA NA NA . C NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc8 D O PRO 68 D PRO 68 1_555 LA NA NA . D NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.134 ? metalc ? metalc9 D O ILE 71 D ILE 71 1_555 LA NA NA . D NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc10 E O PRO 68 E PRO 68 1_555 TA NA NA . E NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc11 E O ILE 71 E ILE 71 1_555 TA NA NA . E NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? # _chem_comp.formula 'C32 H65 N O8 P 1' _chem_comp.formula_weight 622.834 _chem_comp.id PLC _chem_comp.mon_nstd_flag . _chem_comp.name 'DIUNDECYL PHOSPHATIDYL CHOLINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PLC sing 353 n n C1 O3P PLC sing 354 n n C1 H11 PLC sing 355 n n C1 H12 PLC sing 356 n n C2 C3 PLC sing 357 n n C2 O2 PLC sing 358 n n C2 H2 PLC sing 359 n n C3 O3 PLC sing 360 n n C3 H31 PLC sing 361 n n C3 H32 PLC sing 362 n n C4 C5 PLC sing 363 n n C4 O4P PLC sing 364 n n C4 H41 PLC sing 365 n n C4 H42 PLC sing 366 n n C5 N PLC sing 367 n n C5 H51 PLC sing 368 n n C5 H52 PLC sing 369 n n C6 N PLC sing 370 n n C6 H61 PLC sing 371 n n C6 H62 PLC sing 372 n n C6 H63 PLC sing 373 n n C7 N PLC sing 374 n n C7 H71 PLC sing 375 n n C7 H72 PLC sing 376 n n C7 H73 PLC sing 377 n n C8 N PLC sing 378 n n C8 H81 PLC sing 379 n n C8 H82 PLC sing 380 n n C8 H83 PLC sing 381 n n C' C1' PLC sing 382 n n C' O' PLC doub 383 n n C' O2 PLC sing 384 n n C1' C2' PLC sing 385 n n C1' "H1'1" PLC sing 386 n n C1' "H1'2" PLC sing 387 n n C2' C3' PLC sing 388 n n C2' "H2'1" PLC sing 389 n n C2' "H2'2" PLC sing 390 n n C3' C4' PLC sing 391 n n C3' "H3'1" PLC sing 392 n n C3' "H3'2" PLC sing 393 n n C4' C5' PLC sing 394 n n C4' "H4'1" PLC sing 395 n n C4' "H4'2" PLC sing 396 n n C5' C6' PLC sing 397 n n C5' "H5'1" PLC sing 398 n n C5' "H5'2" PLC sing 399 n n C6' C7' PLC sing 400 n n C6' "H6'1" PLC sing 401 n n C6' "H6'2" PLC sing 402 n n C7' C8' PLC sing 403 n n C7' "H7'1" PLC sing 404 n n C7' "H7'2" PLC sing 405 n n C8' C9' PLC sing 406 n n C8' "H8'1" PLC sing 407 n n C8' "H8'2" PLC sing 408 n n C9' CA' PLC sing 409 n n C9' "H9'1" PLC sing 410 n n C9' "H9'2" PLC sing 411 n n CA' CB' PLC sing 412 n n CA' "HT'1" PLC sing 413 n n CA' "HT'2" PLC sing 414 n n CB' "HE'1" PLC sing 415 n n CB' "HE'2" PLC sing 416 n n CB' "HE'3" PLC sing 417 n n CB C1B PLC sing 418 n n CB OB PLC doub 419 n n CB O3 PLC sing 420 n n C1B C2B PLC sing 421 n n C1B H1A1 PLC sing 422 n n C1B H1A2 PLC sing 423 n n C2B C3B PLC sing 424 n n C2B H2A1 PLC sing 425 n n C2B H2A2 PLC sing 426 n n C3B C4B PLC sing 427 n n C3B H3A1 PLC sing 428 n n C3B H3A2 PLC sing 429 n n C4B C5B PLC sing 430 n n C4B H4A1 PLC sing 431 n n C4B H4A2 PLC sing 432 n n C5B C6B PLC sing 433 n n C5B H5A1 PLC sing 434 n n C5B H5A2 PLC sing 435 n n C6B C7B PLC sing 436 n n C6B H6A1 PLC sing 437 n n C6B H6A2 PLC sing 438 n n C7B C8B PLC sing 439 n n C7B H7A1 PLC sing 440 n n C7B H7A2 PLC sing 441 n n C8B C9B PLC sing 442 n n C8B H8A1 PLC sing 443 n n C8B H8A2 PLC sing 444 n n C9B CAA PLC sing 445 n n C9B H9A1 PLC sing 446 n n C9B H9A2 PLC sing 447 n n CAA CBA PLC sing 448 n n CAA HTA1 PLC sing 449 n n CAA HTA2 PLC sing 450 n n CBA HEA1 PLC sing 451 n n CBA HEA2 PLC sing 452 n n CBA HEA3 PLC sing 453 n n O1P P PLC doub 454 n n O2P P PLC sing 455 n n O2P HOP2 PLC sing 456 n n O3P P PLC sing 457 n n O4P P PLC sing 458 n n # _atom_sites.entry_id 6HJ3 _atom_sites.fract_transf_matrix[1][1] 0.005509 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001179 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006397 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 PLC A 1 401 402 PLC PLC . G 2 PLC A 1 402 403 PLC PLC . H 2 PLC A 1 403 404 PLC PLC . I 3 CL A 1 404 405 CL CL . J 3 CL A 1 405 406 CL CL . K 3 CL A 1 406 407 CL CL . L 4 NA A 1 407 408 NA NA . M 5 LMT A 1 408 412 LMT LMT . N 2 PLC A 1 409 403 PLC PLC . O 3 CL A 1 410 1 CL CL . P 6 FUM A 1 411 1 FUM FUM . Q 6 FUM A 1 412 1 FUM FUM . R 4 NA B 1 401 409 NA NA . S 2 PLC B 1 402 402 PLC PLC . T 2 PLC B 1 403 403 PLC PLC . U 2 PLC B 1 404 404 PLC PLC . V 3 CL B 1 405 405 CL CL . W 4 NA B 1 406 406 NA NA . X 5 LMT B 1 407 408 LMT LMT . Y 3 CL B 1 408 1 CL CL . Z 2 PLC C 1 401 402 PLC PLC . AA 2 PLC C 1 402 403 PLC PLC . BA 2 PLC C 1 403 404 PLC PLC . CA 3 CL C 1 404 405 CL CL . DA 4 NA C 1 405 406 NA NA . EA 5 LMT C 1 406 408 LMT LMT . FA 6 FUM C 1 407 1 FUM FUM . GA 3 CL C 1 408 1 CL CL . HA 5 LMT D 1 401 411 LMT LMT . IA 2 PLC D 1 402 402 PLC PLC . JA 2 PLC D 1 403 404 PLC PLC . KA 3 CL D 1 404 405 CL CL . LA 4 NA D 1 405 406 NA NA . MA 5 LMT D 1 406 408 LMT LMT . NA 6 FUM D 1 407 1 FUM FUM . OA 3 CL D 1 408 1 CL CL . PA 2 PLC E 1 401 403 PLC PLC . QA 2 PLC E 1 402 402 PLC PLC . RA 2 PLC E 1 403 404 PLC PLC . SA 3 CL E 1 404 405 CL CL . TA 4 NA E 1 405 406 NA NA . UA 5 LMT E 1 406 408 LMT LMT . VA 3 CL E 1 407 1 CL CL . WA 6 FUM E 1 408 1 FUM FUM . XA 7 HOH A 1 501 6 HOH HOH . XA 7 HOH A 2 502 2 HOH HOH . XA 7 HOH A 3 503 1 HOH HOH . YA 7 HOH B 1 501 4 HOH HOH . YA 7 HOH B 2 502 8 HOH HOH . YA 7 HOH B 3 503 6 HOH HOH . ZA 7 HOH C 1 501 10 HOH HOH . ZA 7 HOH C 2 502 3 HOH HOH . ZA 7 HOH C 3 503 5 HOH HOH . ZA 7 HOH C 4 504 2 HOH HOH . ZA 7 HOH C 5 505 6 HOH HOH . ZA 7 HOH C 6 506 9 HOH HOH . ZA 7 HOH C 7 507 3 HOH HOH . AB 7 HOH D 1 501 1 HOH HOH . AB 7 HOH D 2 502 7 HOH HOH . AB 7 HOH D 3 503 10 HOH HOH . AB 7 HOH D 4 504 2 HOH HOH . AB 7 HOH D 5 505 7 HOH HOH . AB 7 HOH D 6 506 9 HOH HOH . AB 7 HOH D 7 507 5 HOH HOH . AB 7 HOH D 8 508 8 HOH HOH . AB 7 HOH D 9 509 4 HOH HOH . BB 7 HOH E 1 501 1 HOH HOH . BB 7 HOH E 2 502 3 HOH HOH . BB 7 HOH E 3 503 5 HOH HOH . BB 7 HOH E 4 504 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C' PLC . . . PA 2 82.734 -33.454 47.199 1 83.05 ? C' PLC 401 E 1 HETATM 2 C C1' PLC . . . PA 2 81.776 -32.926 48.278 1 80.97 ? C1' PLC 401 E 1 HETATM 3 C C2' PLC . . . PA 2 82.469 -32.779 49.668 1 77.62 ? C2' PLC 401 E 1 HETATM 4 C C3' PLC . . . PA 2 82.077 -31.471 50.394 1 74.23 ? C3' PLC 401 E 1 HETATM 5 C C4' PLC . . . PA 2 83.334 -30.652 50.948 1 73.64 ? C4' PLC 401 E 1 HETATM 6 C C5' PLC . . . PA 2 83.329 -30.513 52.513 1 69.62 ? C5' PLC 401 E 1 HETATM 7 C C6' PLC . . . PA 2 84.113 -29.315 53.158 1 62.52 ? C6' PLC 401 E 1 HETATM 8 C C7' PLC . . . PA 2 85.206 -29.825 54.106 1 57.56 ? C7' PLC 401 E 1 HETATM 9 C C8' PLC . . . PA 2 85.357 -28.989 55.382 1 59.84 ? C8' PLC 401 E 1 HETATM 10 C C9' PLC . . . PA 2 86.725 -29.348 56.004 1 63.79 ? C9' PLC 401 E 1 HETATM 11 C CA' PLC . . . PA 2 87.139 -28.577 57.277 1 67.04 ? CA' PLC 401 E 1 HETATM 12 C CB' PLC . . . PA 2 88.646 -28.764 57.566 1 68.91 ? CB' PLC 401 E 1 HETATM 13 C CB PLC . . . PA 2 83.436 -30.846 42.828 1 100.14 ? CB PLC 401 E 1 HETATM 14 C C1B PLC . . . PA 2 84.555 -30.824 43.84 1 102.06 ? C1B PLC 401 E 1 HETATM 15 C C2B PLC . . . PA 2 84.561 -29.508 44.664 1 102.2 ? C2B PLC 401 E 1 HETATM 16 C C3B PLC . . . PA 2 85.714 -29.515 45.703 1 103.58 ? C3B PLC 401 E 1 HETATM 17 C C4B PLC . . . PA 2 85.368 -28.694 46.965 1 102.72 ? C4B PLC 401 E 1 HETATM 18 C C5B PLC . . . PA 2 86.427 -28.889 48.084 1 103.1 ? C5B PLC 401 E 1 HETATM 19 C C6B PLC . . . PA 2 86.423 -27.719 49.121 1 102.5 ? C6B PLC 401 E 1 HETATM 20 C C7B PLC . . . PA 2 87.861 -27.449 49.677 1 101.74 ? C7B PLC 401 E 1 HETATM 21 C C8B PLC . . . PA 2 87.89 -26.536 50.924 1 98.52 ? C8B PLC 401 E 1 HETATM 22 C C9B PLC . . . PA 2 89.276 -26.581 51.613 1 99.43 ? C9B PLC 401 E 1 HETATM 23 C CAA PLC . . . PA 2 89.176 -26.834 53.139 1 98.04 ? CAA PLC 401 E 1 HETATM 24 C CBA PLC . . . PA 2 90.516 -26.612 53.839 1 99.44 ? CBA PLC 401 E 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 54 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 24 #