data_6HJ3
#
_model_server_result.job_id            LtN9WGTQATXLnFZTrtPplQ 
_model_server_result.datetime_utc      '2024-11-24 04:06:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hj3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":404}' 
#
_entry.id    6HJ3 
#
_exptl.entry_id    6HJ3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              622.834 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIUNDECYL PHOSPHATIDYL CHOLINE' 
_entity.pdbx_number_of_molecules    15 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.08 
_cell.angle_gamma         90 
_cell.entry_id            6HJ3 
_cell.length_a            181.51 
_cell.length_b            132.65 
_cell.length_c            159.86 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HJ3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 N N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
? 2 IA N N 
? 2 JA N N 
? 2 PA N N 
? 2 QA N N 
? 2 RA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O PRO 68 A PRO 68 1_555 L NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.17 ? 
metalc ? metalc2 A O ILE 71 A ILE 71 1_555 L NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? 
metalc ? metalc3 XA O HOH . A HOH 501 1_555 R NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc4 B O PRO 68 B PRO 68 1_555 W NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? 
metalc ? metalc5 B O ILE 71 B ILE 71 1_555 W NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc6 C O PRO 68 C PRO 68 1_555 DA NA NA . C NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.087 ? 
metalc ? metalc7 C O ILE 71 C ILE 71 1_555 DA NA NA . C NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? 
metalc ? metalc8 D O PRO 68 D PRO 68 1_555 LA NA NA . D NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.134 ? 
metalc ? metalc9 D O ILE 71 D ILE 71 1_555 LA NA NA . D NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc10 E O PRO 68 E PRO 68 1_555 TA NA NA . E NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? 
metalc ? metalc11 E O ILE 71 E ILE 71 1_555 TA NA NA . E NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
#
_chem_comp.formula           'C32 H65 N O8 P 1' 
_chem_comp.formula_weight    622.834 
_chem_comp.id                PLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIUNDECYL PHOSPHATIDYL CHOLINE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PLC sing 353 n n 
C1 O3P PLC sing 354 n n 
C1 H11 PLC sing 355 n n 
C1 H12 PLC sing 356 n n 
C2 C3 PLC sing 357 n n 
C2 O2 PLC sing 358 n n 
C2 H2 PLC sing 359 n n 
C3 O3 PLC sing 360 n n 
C3 H31 PLC sing 361 n n 
C3 H32 PLC sing 362 n n 
C4 C5 PLC sing 363 n n 
C4 O4P PLC sing 364 n n 
C4 H41 PLC sing 365 n n 
C4 H42 PLC sing 366 n n 
C5 N PLC sing 367 n n 
C5 H51 PLC sing 368 n n 
C5 H52 PLC sing 369 n n 
C6 N PLC sing 370 n n 
C6 H61 PLC sing 371 n n 
C6 H62 PLC sing 372 n n 
C6 H63 PLC sing 373 n n 
C7 N PLC sing 374 n n 
C7 H71 PLC sing 375 n n 
C7 H72 PLC sing 376 n n 
C7 H73 PLC sing 377 n n 
C8 N PLC sing 378 n n 
C8 H81 PLC sing 379 n n 
C8 H82 PLC sing 380 n n 
C8 H83 PLC sing 381 n n 
C' C1' PLC sing 382 n n 
C' O' PLC doub 383 n n 
C' O2 PLC sing 384 n n 
C1' C2' PLC sing 385 n n 
C1' "H1'1" PLC sing 386 n n 
C1' "H1'2" PLC sing 387 n n 
C2' C3' PLC sing 388 n n 
C2' "H2'1" PLC sing 389 n n 
C2' "H2'2" PLC sing 390 n n 
C3' C4' PLC sing 391 n n 
C3' "H3'1" PLC sing 392 n n 
C3' "H3'2" PLC sing 393 n n 
C4' C5' PLC sing 394 n n 
C4' "H4'1" PLC sing 395 n n 
C4' "H4'2" PLC sing 396 n n 
C5' C6' PLC sing 397 n n 
C5' "H5'1" PLC sing 398 n n 
C5' "H5'2" PLC sing 399 n n 
C6' C7' PLC sing 400 n n 
C6' "H6'1" PLC sing 401 n n 
C6' "H6'2" PLC sing 402 n n 
C7' C8' PLC sing 403 n n 
C7' "H7'1" PLC sing 404 n n 
C7' "H7'2" PLC sing 405 n n 
C8' C9' PLC sing 406 n n 
C8' "H8'1" PLC sing 407 n n 
C8' "H8'2" PLC sing 408 n n 
C9' CA' PLC sing 409 n n 
C9' "H9'1" PLC sing 410 n n 
C9' "H9'2" PLC sing 411 n n 
CA' CB' PLC sing 412 n n 
CA' "HT'1" PLC sing 413 n n 
CA' "HT'2" PLC sing 414 n n 
CB' "HE'1" PLC sing 415 n n 
CB' "HE'2" PLC sing 416 n n 
CB' "HE'3" PLC sing 417 n n 
CB C1B PLC sing 418 n n 
CB OB PLC doub 419 n n 
CB O3 PLC sing 420 n n 
C1B C2B PLC sing 421 n n 
C1B H1A1 PLC sing 422 n n 
C1B H1A2 PLC sing 423 n n 
C2B C3B PLC sing 424 n n 
C2B H2A1 PLC sing 425 n n 
C2B H2A2 PLC sing 426 n n 
C3B C4B PLC sing 427 n n 
C3B H3A1 PLC sing 428 n n 
C3B H3A2 PLC sing 429 n n 
C4B C5B PLC sing 430 n n 
C4B H4A1 PLC sing 431 n n 
C4B H4A2 PLC sing 432 n n 
C5B C6B PLC sing 433 n n 
C5B H5A1 PLC sing 434 n n 
C5B H5A2 PLC sing 435 n n 
C6B C7B PLC sing 436 n n 
C6B H6A1 PLC sing 437 n n 
C6B H6A2 PLC sing 438 n n 
C7B C8B PLC sing 439 n n 
C7B H7A1 PLC sing 440 n n 
C7B H7A2 PLC sing 441 n n 
C8B C9B PLC sing 442 n n 
C8B H8A1 PLC sing 443 n n 
C8B H8A2 PLC sing 444 n n 
C9B CAA PLC sing 445 n n 
C9B H9A1 PLC sing 446 n n 
C9B H9A2 PLC sing 447 n n 
CAA CBA PLC sing 448 n n 
CAA HTA1 PLC sing 449 n n 
CAA HTA2 PLC sing 450 n n 
CBA HEA1 PLC sing 451 n n 
CBA HEA2 PLC sing 452 n n 
CBA HEA3 PLC sing 453 n n 
O1P P PLC doub 454 n n 
O2P P PLC sing 455 n n 
O2P HOP2 PLC sing 456 n n 
O3P P PLC sing 457 n n 
O4P P PLC sing 458 n n 
#
_atom_sites.entry_id                     6HJ3 
_atom_sites.fract_transf_matrix[1][1]    0.005509 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001179 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007539 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006397 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 PLC A 1 401 402 PLC PLC . 
G 2 PLC A 1 402 403 PLC PLC . 
H 2 PLC A 1 403 404 PLC PLC . 
I 3 CL A 1 404 405 CL CL . 
J 3 CL A 1 405 406 CL CL . 
K 3 CL A 1 406 407 CL CL . 
L 4 NA A 1 407 408 NA NA . 
M 5 LMT A 1 408 412 LMT LMT . 
N 2 PLC A 1 409 403 PLC PLC . 
O 3 CL A 1 410 1 CL CL . 
P 6 FUM A 1 411 1 FUM FUM . 
Q 6 FUM A 1 412 1 FUM FUM . 
R 4 NA B 1 401 409 NA NA . 
S 2 PLC B 1 402 402 PLC PLC . 
T 2 PLC B 1 403 403 PLC PLC . 
U 2 PLC B 1 404 404 PLC PLC . 
V 3 CL B 1 405 405 CL CL . 
W 4 NA B 1 406 406 NA NA . 
X 5 LMT B 1 407 408 LMT LMT . 
Y 3 CL B 1 408 1 CL CL . 
Z 2 PLC C 1 401 402 PLC PLC . 
AA 2 PLC C 1 402 403 PLC PLC . 
BA 2 PLC C 1 403 404 PLC PLC . 
CA 3 CL C 1 404 405 CL CL . 
DA 4 NA C 1 405 406 NA NA . 
EA 5 LMT C 1 406 408 LMT LMT . 
FA 6 FUM C 1 407 1 FUM FUM . 
GA 3 CL C 1 408 1 CL CL . 
HA 5 LMT D 1 401 411 LMT LMT . 
IA 2 PLC D 1 402 402 PLC PLC . 
JA 2 PLC D 1 403 404 PLC PLC . 
KA 3 CL D 1 404 405 CL CL . 
LA 4 NA D 1 405 406 NA NA . 
MA 5 LMT D 1 406 408 LMT LMT . 
NA 6 FUM D 1 407 1 FUM FUM . 
OA 3 CL D 1 408 1 CL CL . 
PA 2 PLC E 1 401 403 PLC PLC . 
QA 2 PLC E 1 402 402 PLC PLC . 
RA 2 PLC E 1 403 404 PLC PLC . 
SA 3 CL E 1 404 405 CL CL . 
TA 4 NA E 1 405 406 NA NA . 
UA 5 LMT E 1 406 408 LMT LMT . 
VA 3 CL E 1 407 1 CL CL . 
WA 6 FUM E 1 408 1 FUM FUM . 
XA 7 HOH A 1 501 6 HOH HOH . 
XA 7 HOH A 2 502 2 HOH HOH . 
XA 7 HOH A 3 503 1 HOH HOH . 
YA 7 HOH B 1 501 4 HOH HOH . 
YA 7 HOH B 2 502 8 HOH HOH . 
YA 7 HOH B 3 503 6 HOH HOH . 
ZA 7 HOH C 1 501 10 HOH HOH . 
ZA 7 HOH C 2 502 3 HOH HOH . 
ZA 7 HOH C 3 503 5 HOH HOH . 
ZA 7 HOH C 4 504 2 HOH HOH . 
ZA 7 HOH C 5 505 6 HOH HOH . 
ZA 7 HOH C 6 506 9 HOH HOH . 
ZA 7 HOH C 7 507 3 HOH HOH . 
AB 7 HOH D 1 501 1 HOH HOH . 
AB 7 HOH D 2 502 7 HOH HOH . 
AB 7 HOH D 3 503 10 HOH HOH . 
AB 7 HOH D 4 504 2 HOH HOH . 
AB 7 HOH D 5 505 7 HOH HOH . 
AB 7 HOH D 6 506 9 HOH HOH . 
AB 7 HOH D 7 507 5 HOH HOH . 
AB 7 HOH D 8 508 8 HOH HOH . 
AB 7 HOH D 9 509 4 HOH HOH . 
BB 7 HOH E 1 501 1 HOH HOH . 
BB 7 HOH E 2 502 3 HOH HOH . 
BB 7 HOH E 3 503 5 HOH HOH . 
BB 7 HOH E 4 504 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C' PLC . . . U 2 35.609 -36.485 60.689 1 106.7 ? C' PLC 404 B 1 
HETATM 2 C C1' PLC . . . U 2 34.542 -35.537 60.171 1 106.81 ? C1' PLC 404 B 1 
HETATM 3 C C2' PLC . . . U 2 33.47 -36.319 59.372 1 105.22 ? C2' PLC 404 B 1 
HETATM 4 C C3' PLC . . . U 2 32.196 -35.486 59.129 1 102.31 ? C3' PLC 404 B 1 
HETATM 5 C C4' PLC . . . U 2 31.101 -36.356 58.453 1 100.49 ? C4' PLC 404 B 1 
HETATM 6 C C5' PLC . . . U 2 29.844 -35.552 58.047 1 97.15 ? C5' PLC 404 B 1 
HETATM 7 C C6' PLC . . . U 2 28.779 -36.477 57.41 1 97.84 ? C6' PLC 404 B 1 
HETATM 8 C C7' PLC . . . U 2 27.512 -35.701 56.951 1 98.53 ? C7' PLC 404 B 1 
HETATM 9 C C8' PLC . . . U 2 26.446 -36.634 56.314 1 99.15 ? C8' PLC 404 B 1 
HETATM 10 C C9' PLC . . . U 2 25.337 -35.878 55.552 1 97.5 ? C9' PLC 404 B 1 
HETATM 11 C CA' PLC . . . U 2 24.127 -36.803 55.278 1 99.3 ? CA' PLC 404 B 1 
HETATM 12 C CB' PLC . . . U 2 23.074 -36.176 54.339 1 97.55 ? CB' PLC 404 B 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           34 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           965 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           12 
#