data_6HJ3 # _model_server_result.job_id RfLdIRCKay52wTpymrFAGQ _model_server_result.datetime_utc '2024-11-08 11:37:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hj3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EA","auth_seq_id":406}' # _entry.id 6HJ3 # _exptl.entry_id 6HJ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.08 _cell.angle_gamma 90 _cell.entry_id 6HJ3 _cell.length_a 181.51 _cell.length_b 132.65 _cell.length_c 159.86 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HJ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 M N N ? 5 X N N ? 5 EA N N ? 5 HA N N ? 5 MA N N ? 5 UA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PRO 68 A PRO 68 1_555 L NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.17 ? metalc ? metalc2 A O ILE 71 A ILE 71 1_555 L NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc3 XA O HOH . A HOH 501 1_555 R NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc4 B O PRO 68 B PRO 68 1_555 W NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? metalc ? metalc5 B O ILE 71 B ILE 71 1_555 W NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc6 C O PRO 68 C PRO 68 1_555 DA NA NA . C NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.087 ? metalc ? metalc7 C O ILE 71 C ILE 71 1_555 DA NA NA . C NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc8 D O PRO 68 D PRO 68 1_555 LA NA NA . D NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.134 ? metalc ? metalc9 D O ILE 71 D ILE 71 1_555 LA NA NA . D NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc10 E O PRO 68 E PRO 68 1_555 TA NA NA . E NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc11 E O ILE 71 E ILE 71 1_555 TA NA NA . E NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 205 n n C1B O1B LMT sing 206 n n C1B O5B LMT sing 207 n n C1B H1B LMT sing 208 n n C2B C3B LMT sing 209 n n C2B O2B LMT sing 210 n n C2B H2B LMT sing 211 n n C3B C4B LMT sing 212 n n C3B O3B LMT sing 213 n n C3B H3B LMT sing 214 n n C4B C5B LMT sing 215 n n C4B O4' LMT sing 216 n n C4B H4B LMT sing 217 n n C5B C6B LMT sing 218 n n C5B O5B LMT sing 219 n n C5B H5B LMT sing 220 n n C6B O6B LMT sing 221 n n C6B "H6'2" LMT sing 222 n n C6B "H6'1" LMT sing 223 n n O1B C4' LMT sing 224 n n O2B H2O1 LMT sing 225 n n O3B H3O1 LMT sing 226 n n O4' H4O1 LMT sing 227 n n O6B H6B LMT sing 228 n n C1' C2' LMT sing 229 n n C1' O1' LMT sing 230 n n C1' O5' LMT sing 231 n n C1' H1' LMT sing 232 n n C2' C3' LMT sing 233 n n C2' O2' LMT sing 234 n n C2' H2' LMT sing 235 n n C3' C4' LMT sing 236 n n C3' O3' LMT sing 237 n n C3' H3' LMT sing 238 n n C4' C5' LMT sing 239 n n C4' H4' LMT sing 240 n n C5' C6' LMT sing 241 n n C5' O5' LMT sing 242 n n C5' H5' LMT sing 243 n n C6' O6' LMT sing 244 n n C6' H6D LMT sing 245 n n C6' H6E LMT sing 246 n n O1' C1 LMT sing 247 n n O2' H2O2 LMT sing 248 n n O3' H3O2 LMT sing 249 n n O6' H6' LMT sing 250 n n C1 C2 LMT sing 251 n n C1 H12 LMT sing 252 n n C1 H11 LMT sing 253 n n C2 C3 LMT sing 254 n n C2 H22 LMT sing 255 n n C2 H21 LMT sing 256 n n C3 C4 LMT sing 257 n n C3 H32 LMT sing 258 n n C3 H31 LMT sing 259 n n C4 C5 LMT sing 260 n n C4 H42 LMT sing 261 n n C4 H41 LMT sing 262 n n C5 C6 LMT sing 263 n n C5 H52 LMT sing 264 n n C5 H51 LMT sing 265 n n C6 C7 LMT sing 266 n n C6 H62 LMT sing 267 n n C6 H61 LMT sing 268 n n C7 C8 LMT sing 269 n n C7 H72 LMT sing 270 n n C7 H71 LMT sing 271 n n C8 C9 LMT sing 272 n n C8 H82 LMT sing 273 n n C8 H81 LMT sing 274 n n C9 C10 LMT sing 275 n n C9 H92 LMT sing 276 n n C9 H91 LMT sing 277 n n C10 C11 LMT sing 278 n n C10 H102 LMT sing 279 n n C10 H101 LMT sing 280 n n C11 C12 LMT sing 281 n n C11 H112 LMT sing 282 n n C11 H111 LMT sing 283 n n C12 H123 LMT sing 284 n n C12 H122 LMT sing 285 n n C12 H121 LMT sing 286 n n # _atom_sites.entry_id 6HJ3 _atom_sites.fract_transf_matrix[1][1] 0.005509 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001179 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006397 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 PLC A 1 401 402 PLC PLC . G 2 PLC A 1 402 403 PLC PLC . H 2 PLC A 1 403 404 PLC PLC . I 3 CL A 1 404 405 CL CL . J 3 CL A 1 405 406 CL CL . K 3 CL A 1 406 407 CL CL . L 4 NA A 1 407 408 NA NA . M 5 LMT A 1 408 412 LMT LMT . N 2 PLC A 1 409 403 PLC PLC . O 3 CL A 1 410 1 CL CL . P 6 FUM A 1 411 1 FUM FUM . Q 6 FUM A 1 412 1 FUM FUM . R 4 NA B 1 401 409 NA NA . S 2 PLC B 1 402 402 PLC PLC . T 2 PLC B 1 403 403 PLC PLC . U 2 PLC B 1 404 404 PLC PLC . V 3 CL B 1 405 405 CL CL . W 4 NA B 1 406 406 NA NA . X 5 LMT B 1 407 408 LMT LMT . Y 3 CL B 1 408 1 CL CL . Z 2 PLC C 1 401 402 PLC PLC . AA 2 PLC C 1 402 403 PLC PLC . BA 2 PLC C 1 403 404 PLC PLC . CA 3 CL C 1 404 405 CL CL . DA 4 NA C 1 405 406 NA NA . EA 5 LMT C 1 406 408 LMT LMT . FA 6 FUM C 1 407 1 FUM FUM . GA 3 CL C 1 408 1 CL CL . HA 5 LMT D 1 401 411 LMT LMT . IA 2 PLC D 1 402 402 PLC PLC . JA 2 PLC D 1 403 404 PLC PLC . KA 3 CL D 1 404 405 CL CL . LA 4 NA D 1 405 406 NA NA . MA 5 LMT D 1 406 408 LMT LMT . NA 6 FUM D 1 407 1 FUM FUM . OA 3 CL D 1 408 1 CL CL . PA 2 PLC E 1 401 403 PLC PLC . QA 2 PLC E 1 402 402 PLC PLC . RA 2 PLC E 1 403 404 PLC PLC . SA 3 CL E 1 404 405 CL CL . TA 4 NA E 1 405 406 NA NA . UA 5 LMT E 1 406 408 LMT LMT . VA 3 CL E 1 407 1 CL CL . WA 6 FUM E 1 408 1 FUM FUM . XA 7 HOH A 1 501 6 HOH HOH . XA 7 HOH A 2 502 2 HOH HOH . XA 7 HOH A 3 503 1 HOH HOH . YA 7 HOH B 1 501 4 HOH HOH . YA 7 HOH B 2 502 8 HOH HOH . YA 7 HOH B 3 503 6 HOH HOH . ZA 7 HOH C 1 501 10 HOH HOH . ZA 7 HOH C 2 502 3 HOH HOH . ZA 7 HOH C 3 503 5 HOH HOH . ZA 7 HOH C 4 504 2 HOH HOH . ZA 7 HOH C 5 505 6 HOH HOH . ZA 7 HOH C 6 506 9 HOH HOH . ZA 7 HOH C 7 507 3 HOH HOH . AB 7 HOH D 1 501 1 HOH HOH . AB 7 HOH D 2 502 7 HOH HOH . AB 7 HOH D 3 503 10 HOH HOH . AB 7 HOH D 4 504 2 HOH HOH . AB 7 HOH D 5 505 7 HOH HOH . AB 7 HOH D 6 506 9 HOH HOH . AB 7 HOH D 7 507 5 HOH HOH . AB 7 HOH D 8 508 8 HOH HOH . AB 7 HOH D 9 509 4 HOH HOH . BB 7 HOH E 1 501 1 HOH HOH . BB 7 HOH E 2 502 3 HOH HOH . BB 7 HOH E 3 503 5 HOH HOH . BB 7 HOH E 4 504 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LMT . . . EA 5 52.325 -32.058 35.202 1 67.16 ? C1 LMT 406 C 1 HETATM 2 C C2 LMT . . . EA 5 53.062 -31.153 36.241 1 66.24 ? C2 LMT 406 C 1 HETATM 3 C C3 LMT . . . EA 5 52.976 -31.78 37.663 1 60.5 ? C3 LMT 406 C 1 HETATM 4 C C4 LMT . . . EA 5 53.688 -30.969 38.777 1 59.01 ? C4 LMT 406 C 1 HETATM 5 C C5 LMT . . . EA 5 53.477 -31.65 40.174 1 59.72 ? C5 LMT 406 C 1 HETATM 6 C C6 LMT . . . EA 5 54.283 -31.021 41.352 1 57.68 ? C6 LMT 406 C 1 HETATM 7 C C7 LMT . . . EA 5 53.457 -30.914 42.685 1 56.49 ? C7 LMT 406 C 1 HETATM 8 C C8 LMT . . . EA 5 54.371 -30.743 43.899 1 55.26 ? C8 LMT 406 C 1 HETATM 9 C C9 LMT . . . EA 5 53.609 -30.139 45.102 1 59.75 ? C9 LMT 406 C 1 HETATM 10 C C10 LMT . . . EA 5 54.548 -29.677 46.235 1 59.87 ? C10 LMT 406 C 1 HETATM 11 C C11 LMT . . . EA 5 53.912 -29.833 47.626 1 60.2 ? C11 LMT 406 C 1 HETATM 12 C C12 LMT . . . EA 5 54.844 -29.445 48.82 1 55.37 ? C12 LMT 406 C 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #