data_6HJ3 # _model_server_result.job_id nmvd-nFt-KTWcD-kIJC07A _model_server_result.datetime_utc '2024-11-08 11:54:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hj3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":412}' # _entry.id 6HJ3 # _exptl.entry_id 6HJ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 116.072 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FUMARIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.08 _cell.angle_gamma 90 _cell.entry_id 6HJ3 _cell.length_a 181.51 _cell.length_b 132.65 _cell.length_c 159.86 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HJ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 P N N ? 6 Q N N ? 6 FA N N ? 6 NA N N ? 6 WA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PRO 68 A PRO 68 1_555 L NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.17 ? metalc ? metalc2 A O ILE 71 A ILE 71 1_555 L NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc3 XA O HOH . A HOH 501 1_555 R NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc4 B O PRO 68 B PRO 68 1_555 W NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? metalc ? metalc5 B O ILE 71 B ILE 71 1_555 W NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc6 C O PRO 68 C PRO 68 1_555 DA NA NA . C NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.087 ? metalc ? metalc7 C O ILE 71 C ILE 71 1_555 DA NA NA . C NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc8 D O PRO 68 D PRO 68 1_555 LA NA NA . D NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.134 ? metalc ? metalc9 D O ILE 71 D ILE 71 1_555 LA NA NA . D NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc10 E O PRO 68 E PRO 68 1_555 TA NA NA . E NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc11 E O ILE 71 E ILE 71 1_555 TA NA NA . E NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? # _chem_comp.formula 'C4 H4 O4' _chem_comp.formula_weight 116.072 _chem_comp.id FUM _chem_comp.mon_nstd_flag . _chem_comp.name 'FUMARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OXT C FUM sing 83 n n OXT HXT FUM sing 84 n n C O FUM doub 85 n n C C4 FUM sing 86 n n C4 C5 FUM doub 87 e n C4 H4 FUM sing 88 n n C5 C6 FUM sing 89 n n C5 H5 FUM sing 90 n n C6 O7 FUM doub 91 n n C6 O8 FUM sing 92 n n O8 HO8 FUM sing 93 n n # _atom_sites.entry_id 6HJ3 _atom_sites.fract_transf_matrix[1][1] 0.005509 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001179 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006397 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 PLC A 1 401 402 PLC PLC . G 2 PLC A 1 402 403 PLC PLC . H 2 PLC A 1 403 404 PLC PLC . I 3 CL A 1 404 405 CL CL . J 3 CL A 1 405 406 CL CL . K 3 CL A 1 406 407 CL CL . L 4 NA A 1 407 408 NA NA . M 5 LMT A 1 408 412 LMT LMT . N 2 PLC A 1 409 403 PLC PLC . O 3 CL A 1 410 1 CL CL . P 6 FUM A 1 411 1 FUM FUM . Q 6 FUM A 1 412 1 FUM FUM . R 4 NA B 1 401 409 NA NA . S 2 PLC B 1 402 402 PLC PLC . T 2 PLC B 1 403 403 PLC PLC . U 2 PLC B 1 404 404 PLC PLC . V 3 CL B 1 405 405 CL CL . W 4 NA B 1 406 406 NA NA . X 5 LMT B 1 407 408 LMT LMT . Y 3 CL B 1 408 1 CL CL . Z 2 PLC C 1 401 402 PLC PLC . AA 2 PLC C 1 402 403 PLC PLC . BA 2 PLC C 1 403 404 PLC PLC . CA 3 CL C 1 404 405 CL CL . DA 4 NA C 1 405 406 NA NA . EA 5 LMT C 1 406 408 LMT LMT . FA 6 FUM C 1 407 1 FUM FUM . GA 3 CL C 1 408 1 CL CL . HA 5 LMT D 1 401 411 LMT LMT . IA 2 PLC D 1 402 402 PLC PLC . JA 2 PLC D 1 403 404 PLC PLC . KA 3 CL D 1 404 405 CL CL . LA 4 NA D 1 405 406 NA NA . MA 5 LMT D 1 406 408 LMT LMT . NA 6 FUM D 1 407 1 FUM FUM . OA 3 CL D 1 408 1 CL CL . PA 2 PLC E 1 401 403 PLC PLC . QA 2 PLC E 1 402 402 PLC PLC . RA 2 PLC E 1 403 404 PLC PLC . SA 3 CL E 1 404 405 CL CL . TA 4 NA E 1 405 406 NA NA . UA 5 LMT E 1 406 408 LMT LMT . VA 3 CL E 1 407 1 CL CL . WA 6 FUM E 1 408 1 FUM FUM . XA 7 HOH A 1 501 6 HOH HOH . XA 7 HOH A 2 502 2 HOH HOH . XA 7 HOH A 3 503 1 HOH HOH . YA 7 HOH B 1 501 4 HOH HOH . YA 7 HOH B 2 502 8 HOH HOH . YA 7 HOH B 3 503 6 HOH HOH . ZA 7 HOH C 1 501 10 HOH HOH . ZA 7 HOH C 2 502 3 HOH HOH . ZA 7 HOH C 3 503 5 HOH HOH . ZA 7 HOH C 4 504 2 HOH HOH . ZA 7 HOH C 5 505 6 HOH HOH . ZA 7 HOH C 6 506 9 HOH HOH . ZA 7 HOH C 7 507 3 HOH HOH . AB 7 HOH D 1 501 1 HOH HOH . AB 7 HOH D 2 502 7 HOH HOH . AB 7 HOH D 3 503 10 HOH HOH . AB 7 HOH D 4 504 2 HOH HOH . AB 7 HOH D 5 505 7 HOH HOH . AB 7 HOH D 6 506 9 HOH HOH . AB 7 HOH D 7 507 5 HOH HOH . AB 7 HOH D 8 508 8 HOH HOH . AB 7 HOH D 9 509 4 HOH HOH . BB 7 HOH E 1 501 1 HOH HOH . BB 7 HOH E 2 502 3 HOH HOH . BB 7 HOH E 3 503 5 HOH HOH . BB 7 HOH E 4 504 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OXT FUM . . . Q 6 18.251 -14.627 21.79 1 101.09 ? OXT FUM 412 A 1 HETATM 2 C C FUM . . . Q 6 19.318 -15.054 21.118 1 98.67 ? C FUM 412 A 1 HETATM 3 O O FUM . . . Q 6 20.412 -14.9 21.598 1 99.76 ? O FUM 412 A 1 HETATM 4 C C4 FUM . . . Q 6 18.962 -15.648 19.842 1 97.73 ? C4 FUM 412 A 1 HETATM 5 C C5 FUM . . . Q 6 19.905 -16.126 19.039 1 98.89 ? C5 FUM 412 A 1 HETATM 6 C C6 FUM . . . Q 6 19.532 -16.729 17.74 1 100.22 ? C6 FUM 412 A 1 HETATM 7 O O7 FUM . . . Q 6 20.638 -17.146 17.097 1 100.22 ? O7 FUM 412 A 1 HETATM 8 O O8 FUM . . . Q 6 18.4 -16.861 17.223 1 100.21 ? O8 FUM 412 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 8 #