data_6HJ6
#
_model_server_result.job_id            8j0WllrXuKATfQG2FN06ow 
_model_server_result.datetime_utc      '2024-11-06 20:41:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hj6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    6HJ6 
#
_exptl.entry_id    6HJ6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6HJ6 
_cell.length_a            57.29 
_cell.length_b            57.29 
_cell.length_c            113.22 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HJ6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 8 A CYS 84 1_555 A SG CYS 156 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf2 A SG CYS 40 A CYS 116 1_555 A SG CYS 77 A CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
disulf ? disulf3 A SG CYS 102 A CYS 178 1_555 A SG CYS 137 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
covale ? covale1 A ND2 ASN 11 A ASN 87 1_555 G C1 NAG . A NAG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale2 A ND2 ASN 31 A ASN 107 1_555 D C1 NAG . A NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale3 A ND2 ASN 83 A ASN 159 1_555 F C1 NAG . A NAG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? 
covale ? covale4 A ND2 ASN 89 A ASN 165 1_555 C C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale5 A ND2 ASN 149 A ASN 225 1_555 E C1 NAG . A NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6HJ6 
_atom_sites.fract_transf_matrix[1][1]    0.017455 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017455 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008832 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 301 1 GOL GOL . 
C 3 NAG A 1 302 241 NAG NAG . 
D 3 NAG A 1 303 242 NAG NAG . 
E 3 NAG A 1 304 243 NAG NAG . 
F 3 NAG A 1 305 244 NAG NAG . 
G 3 NAG A 1 306 245 NAG NAG . 
H 4 HOH A 1 401 46 HOH HOH . 
H 4 HOH A 2 402 60 HOH HOH . 
H 4 HOH A 3 403 71 HOH HOH . 
H 4 HOH A 4 404 3 HOH HOH . 
H 4 HOH A 5 405 58 HOH HOH . 
H 4 HOH A 6 406 1 HOH HOH . 
H 4 HOH A 7 407 83 HOH HOH . 
H 4 HOH A 8 408 38 HOH HOH . 
H 4 HOH A 9 409 68 HOH HOH . 
H 4 HOH A 10 410 76 HOH HOH . 
H 4 HOH A 11 411 81 HOH HOH . 
H 4 HOH A 12 412 75 HOH HOH . 
H 4 HOH A 13 413 20 HOH HOH . 
H 4 HOH A 14 414 62 HOH HOH . 
H 4 HOH A 15 415 39 HOH HOH . 
H 4 HOH A 16 416 45 HOH HOH . 
H 4 HOH A 17 417 9 HOH HOH . 
H 4 HOH A 18 418 14 HOH HOH . 
H 4 HOH A 19 419 26 HOH HOH . 
H 4 HOH A 20 420 69 HOH HOH . 
H 4 HOH A 21 421 84 HOH HOH . 
H 4 HOH A 22 422 13 HOH HOH . 
H 4 HOH A 23 423 16 HOH HOH . 
H 4 HOH A 24 424 17 HOH HOH . 
H 4 HOH A 25 425 11 HOH HOH . 
H 4 HOH A 26 426 21 HOH HOH . 
H 4 HOH A 27 427 27 HOH HOH . 
H 4 HOH A 28 428 24 HOH HOH . 
H 4 HOH A 29 429 70 HOH HOH . 
H 4 HOH A 30 430 40 HOH HOH . 
H 4 HOH A 31 431 47 HOH HOH . 
H 4 HOH A 32 432 10 HOH HOH . 
H 4 HOH A 33 433 74 HOH HOH . 
H 4 HOH A 34 434 15 HOH HOH . 
H 4 HOH A 35 435 2 HOH HOH . 
H 4 HOH A 36 436 7 HOH HOH . 
H 4 HOH A 37 437 72 HOH HOH . 
H 4 HOH A 38 438 12 HOH HOH . 
H 4 HOH A 39 439 8 HOH HOH . 
H 4 HOH A 40 440 51 HOH HOH . 
H 4 HOH A 41 441 31 HOH HOH . 
H 4 HOH A 42 442 78 HOH HOH . 
H 4 HOH A 43 443 36 HOH HOH . 
H 4 HOH A 44 444 32 HOH HOH . 
H 4 HOH A 45 445 6 HOH HOH . 
H 4 HOH A 46 446 43 HOH HOH . 
H 4 HOH A 47 447 44 HOH HOH . 
H 4 HOH A 48 448 25 HOH HOH . 
H 4 HOH A 49 449 5 HOH HOH . 
H 4 HOH A 50 450 34 HOH HOH . 
H 4 HOH A 51 451 48 HOH HOH . 
H 4 HOH A 52 452 23 HOH HOH . 
H 4 HOH A 53 453 30 HOH HOH . 
H 4 HOH A 54 454 35 HOH HOH . 
H 4 HOH A 55 455 22 HOH HOH . 
H 4 HOH A 56 456 4 HOH HOH . 
H 4 HOH A 57 457 59 HOH HOH . 
H 4 HOH A 58 458 41 HOH HOH . 
H 4 HOH A 59 459 53 HOH HOH . 
H 4 HOH A 60 460 37 HOH HOH . 
H 4 HOH A 61 461 52 HOH HOH . 
H 4 HOH A 62 462 19 HOH HOH . 
H 4 HOH A 63 463 18 HOH HOH . 
H 4 HOH A 64 464 80 HOH HOH . 
H 4 HOH A 65 465 64 HOH HOH . 
H 4 HOH A 66 466 79 HOH HOH . 
H 4 HOH A 67 467 73 HOH HOH . 
H 4 HOH A 68 468 82 HOH HOH . 
H 4 HOH A 69 469 77 HOH HOH . 
H 4 HOH A 70 470 65 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 6.736 27.92 41.053 1 84.87 ? C1 GOL 301 A 1 
HETATM 2 O O1 GOL . . . B 2 5.413 27.483 41.214 1 93.08 ? O1 GOL 301 A 1 
HETATM 3 C C2 GOL . . . B 2 7.554 27.41 42.273 1 88.24 ? C2 GOL 301 A 1 
HETATM 4 O O2 GOL . . . B 2 7.431 26.02 42.416 1 94.59 ? O2 GOL 301 A 1 
HETATM 5 C C3 GOL . . . B 2 9.029 27.867 41.979 1 83.95 ? C3 GOL 301 A 1 
HETATM 6 O O3 GOL . . . B 2 9.665 28.176 43.212 1 79.21 ? O3 GOL 301 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#