data_6HJ6 # _model_server_result.job_id 8Wni9Zf9s1-jvF73MlNaFQ _model_server_result.datetime_utc '2024-11-06 20:35:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hj6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 6HJ6 # _exptl.entry_id 6HJ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HJ6 _cell.length_a 57.29 _cell.length_b 57.29 _cell.length_c 113.22 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HJ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 84 1_555 A SG CYS 156 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 A SG CYS 40 A CYS 116 1_555 A SG CYS 77 A CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf3 A SG CYS 102 A CYS 178 1_555 A SG CYS 137 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? covale ? covale1 A ND2 ASN 11 A ASN 87 1_555 G C1 NAG . A NAG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 A ND2 ASN 31 A ASN 107 1_555 D C1 NAG . A NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 A ND2 ASN 83 A ASN 159 1_555 F C1 NAG . A NAG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale4 A ND2 ASN 89 A ASN 165 1_555 C C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 A ND2 ASN 149 A ASN 225 1_555 E C1 NAG . A NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 250 n n C1 O1 NAG sing 251 n n C1 O5 NAG sing 252 n n C1 H1 NAG sing 253 n n C2 C3 NAG sing 254 n n C2 N2 NAG sing 255 n n C2 H2 NAG sing 256 n n C3 C4 NAG sing 257 n n C3 O3 NAG sing 258 n n C3 H3 NAG sing 259 n n C4 C5 NAG sing 260 n n C4 O4 NAG sing 261 n n C4 H4 NAG sing 262 n n C5 C6 NAG sing 263 n n C5 O5 NAG sing 264 n n C5 H5 NAG sing 265 n n C6 O6 NAG sing 266 n n C6 H61 NAG sing 267 n n C6 H62 NAG sing 268 n n C7 C8 NAG sing 269 n n C7 N2 NAG sing 270 n n C7 O7 NAG doub 271 n n C8 H81 NAG sing 272 n n C8 H82 NAG sing 273 n n C8 H83 NAG sing 274 n n N2 HN2 NAG sing 275 n n O1 HO1 NAG sing 276 n n O3 HO3 NAG sing 277 n n O4 HO4 NAG sing 278 n n O6 HO6 NAG sing 279 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6HJ6 _atom_sites.fract_transf_matrix[1][1] 0.017455 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017455 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008832 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 1 GOL GOL . C 3 NAG A 1 302 241 NAG NAG . D 3 NAG A 1 303 242 NAG NAG . E 3 NAG A 1 304 243 NAG NAG . F 3 NAG A 1 305 244 NAG NAG . G 3 NAG A 1 306 245 NAG NAG . H 4 HOH A 1 401 46 HOH HOH . H 4 HOH A 2 402 60 HOH HOH . H 4 HOH A 3 403 71 HOH HOH . H 4 HOH A 4 404 3 HOH HOH . H 4 HOH A 5 405 58 HOH HOH . H 4 HOH A 6 406 1 HOH HOH . H 4 HOH A 7 407 83 HOH HOH . H 4 HOH A 8 408 38 HOH HOH . H 4 HOH A 9 409 68 HOH HOH . H 4 HOH A 10 410 76 HOH HOH . H 4 HOH A 11 411 81 HOH HOH . H 4 HOH A 12 412 75 HOH HOH . H 4 HOH A 13 413 20 HOH HOH . H 4 HOH A 14 414 62 HOH HOH . H 4 HOH A 15 415 39 HOH HOH . H 4 HOH A 16 416 45 HOH HOH . H 4 HOH A 17 417 9 HOH HOH . H 4 HOH A 18 418 14 HOH HOH . H 4 HOH A 19 419 26 HOH HOH . H 4 HOH A 20 420 69 HOH HOH . H 4 HOH A 21 421 84 HOH HOH . H 4 HOH A 22 422 13 HOH HOH . H 4 HOH A 23 423 16 HOH HOH . H 4 HOH A 24 424 17 HOH HOH . H 4 HOH A 25 425 11 HOH HOH . H 4 HOH A 26 426 21 HOH HOH . H 4 HOH A 27 427 27 HOH HOH . H 4 HOH A 28 428 24 HOH HOH . H 4 HOH A 29 429 70 HOH HOH . H 4 HOH A 30 430 40 HOH HOH . H 4 HOH A 31 431 47 HOH HOH . H 4 HOH A 32 432 10 HOH HOH . H 4 HOH A 33 433 74 HOH HOH . H 4 HOH A 34 434 15 HOH HOH . H 4 HOH A 35 435 2 HOH HOH . H 4 HOH A 36 436 7 HOH HOH . H 4 HOH A 37 437 72 HOH HOH . H 4 HOH A 38 438 12 HOH HOH . H 4 HOH A 39 439 8 HOH HOH . H 4 HOH A 40 440 51 HOH HOH . H 4 HOH A 41 441 31 HOH HOH . H 4 HOH A 42 442 78 HOH HOH . H 4 HOH A 43 443 36 HOH HOH . H 4 HOH A 44 444 32 HOH HOH . H 4 HOH A 45 445 6 HOH HOH . H 4 HOH A 46 446 43 HOH HOH . H 4 HOH A 47 447 44 HOH HOH . H 4 HOH A 48 448 25 HOH HOH . H 4 HOH A 49 449 5 HOH HOH . H 4 HOH A 50 450 34 HOH HOH . H 4 HOH A 51 451 48 HOH HOH . H 4 HOH A 52 452 23 HOH HOH . H 4 HOH A 53 453 30 HOH HOH . H 4 HOH A 54 454 35 HOH HOH . H 4 HOH A 55 455 22 HOH HOH . H 4 HOH A 56 456 4 HOH HOH . H 4 HOH A 57 457 59 HOH HOH . H 4 HOH A 58 458 41 HOH HOH . H 4 HOH A 59 459 53 HOH HOH . H 4 HOH A 60 460 37 HOH HOH . H 4 HOH A 61 461 52 HOH HOH . H 4 HOH A 62 462 19 HOH HOH . H 4 HOH A 63 463 18 HOH HOH . H 4 HOH A 64 464 80 HOH HOH . H 4 HOH A 65 465 64 HOH HOH . H 4 HOH A 66 466 79 HOH HOH . H 4 HOH A 67 467 73 HOH HOH . H 4 HOH A 68 468 82 HOH HOH . H 4 HOH A 69 469 77 HOH HOH . H 4 HOH A 70 470 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 3 -3.208 40.212 50.66 1 73.61 ? C1 NAG 304 A 1 HETATM 2 C C2 NAG . . . E 3 -3.722 39.773 49.287 1 88.11 ? C2 NAG 304 A 1 HETATM 3 C C3 NAG . . . E 3 -4.95 40.587 48.876 1 94.52 ? C3 NAG 304 A 1 HETATM 4 C C4 NAG . . . E 3 -6.003 40.555 49.972 1 98.03 ? C4 NAG 304 A 1 HETATM 5 C C5 NAG . . . E 3 -5.379 41.011 51.282 1 91.24 ? C5 NAG 304 A 1 HETATM 6 C C6 NAG . . . E 3 -6.328 40.9 52.45 1 91.68 ? C6 NAG 304 A 1 HETATM 7 C C7 NAG . . . E 3 -2.362 38.942 47.411 1 104.11 ? C7 NAG 304 A 1 HETATM 8 C C8 NAG . . . E 3 -3.193 37.694 47.478 1 104.19 ? C8 NAG 304 A 1 HETATM 9 N N2 NAG . . . E 3 -2.668 39.9 48.293 1 96.22 ? N2 NAG 304 A 1 HETATM 10 O O3 NAG . . . E 3 -5.504 40.034 47.689 1 101.18 ? O3 NAG 304 A 1 HETATM 11 O O4 NAG . . . E 3 -7.098 41.4 49.634 1 110.53 ? O4 NAG 304 A 1 HETATM 12 O O5 NAG . . . E 3 -4.253 40.177 51.591 1 80.21 ? O5 NAG 304 A 1 HETATM 13 O O6 NAG . . . E 3 -5.618 40.728 53.668 1 87.43 ? O6 NAG 304 A 1 HETATM 14 O O7 NAG . . . E 3 -1.458 39.079 46.591 1 102.12 ? O7 NAG 304 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #