data_6HJA # _model_server_result.job_id zq2T4fRiP-p7AkJiXmIhEQ _model_server_result.datetime_utc '2024-11-23 16:52:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hja # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":403}' # _entry.id 6HJA # _exptl.entry_id 6HJA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 622.834 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIUNDECYL PHOSPHATIDYL CHOLINE' _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.2 _cell.angle_gamma 90 _cell.entry_id 6HJA _cell.length_a 180.866 _cell.length_b 134.412 _cell.length_c 160.309 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HJA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N ? 2 H N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 X N N ? 2 Y N N ? 2 Z N N ? 2 EA N N ? 2 FA N N ? 2 GA N N ? 2 MA N N ? 2 NA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 TA O HOH . A HOH 515 1_555 W NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc2 B O PRO 110 B PRO 68 1_555 S NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.106 ? metalc ? metalc3 B O ILE 113 B ILE 71 1_555 S NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc4 C O ILE 113 C ILE 71 1_555 BA NA NA . C NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc5 W NA NA . C NA 401 1_555 VA O HOH . C HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.873 ? metalc ? metalc6 E O ILE 113 E ILE 71 1_555 PA NA NA . E NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? # _chem_comp.formula 'C32 H65 N O8 P 1' _chem_comp.formula_weight 622.834 _chem_comp.id PLC _chem_comp.mon_nstd_flag . _chem_comp.name 'DIUNDECYL PHOSPHATIDYL CHOLINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PLC sing 313 n n C1 O3P PLC sing 314 n n C1 H11 PLC sing 315 n n C1 H12 PLC sing 316 n n C2 C3 PLC sing 317 n n C2 O2 PLC sing 318 n n C2 H2 PLC sing 319 n n C3 O3 PLC sing 320 n n C3 H31 PLC sing 321 n n C3 H32 PLC sing 322 n n C4 C5 PLC sing 323 n n C4 O4P PLC sing 324 n n C4 H41 PLC sing 325 n n C4 H42 PLC sing 326 n n C5 N PLC sing 327 n n C5 H51 PLC sing 328 n n C5 H52 PLC sing 329 n n C6 N PLC sing 330 n n C6 H61 PLC sing 331 n n C6 H62 PLC sing 332 n n C6 H63 PLC sing 333 n n C7 N PLC sing 334 n n C7 H71 PLC sing 335 n n C7 H72 PLC sing 336 n n C7 H73 PLC sing 337 n n C8 N PLC sing 338 n n C8 H81 PLC sing 339 n n C8 H82 PLC sing 340 n n C8 H83 PLC sing 341 n n C' C1' PLC sing 342 n n C' O' PLC doub 343 n n C' O2 PLC sing 344 n n C1' C2' PLC sing 345 n n C1' "H1'1" PLC sing 346 n n C1' "H1'2" PLC sing 347 n n C2' C3' PLC sing 348 n n C2' "H2'1" PLC sing 349 n n C2' "H2'2" PLC sing 350 n n C3' C4' PLC sing 351 n n C3' "H3'1" PLC sing 352 n n C3' "H3'2" PLC sing 353 n n C4' C5' PLC sing 354 n n C4' "H4'1" PLC sing 355 n n C4' "H4'2" PLC sing 356 n n C5' C6' PLC sing 357 n n C5' "H5'1" PLC sing 358 n n C5' "H5'2" PLC sing 359 n n C6' C7' PLC sing 360 n n C6' "H6'1" PLC sing 361 n n C6' "H6'2" PLC sing 362 n n C7' C8' PLC sing 363 n n C7' "H7'1" PLC sing 364 n n C7' "H7'2" PLC sing 365 n n C8' C9' PLC sing 366 n n C8' "H8'1" PLC sing 367 n n C8' "H8'2" PLC sing 368 n n C9' CA' PLC sing 369 n n C9' "H9'1" PLC sing 370 n n C9' "H9'2" PLC sing 371 n n CA' CB' PLC sing 372 n n CA' "HT'1" PLC sing 373 n n CA' "HT'2" PLC sing 374 n n CB' "HE'1" PLC sing 375 n n CB' "HE'2" PLC sing 376 n n CB' "HE'3" PLC sing 377 n n CB C1B PLC sing 378 n n CB OB PLC doub 379 n n CB O3 PLC sing 380 n n C1B C2B PLC sing 381 n n C1B H1A1 PLC sing 382 n n C1B H1A2 PLC sing 383 n n C2B C3B PLC sing 384 n n C2B H2A1 PLC sing 385 n n C2B H2A2 PLC sing 386 n n C3B C4B PLC sing 387 n n C3B H3A1 PLC sing 388 n n C3B H3A2 PLC sing 389 n n C4B C5B PLC sing 390 n n C4B H4A1 PLC sing 391 n n C4B H4A2 PLC sing 392 n n C5B C6B PLC sing 393 n n C5B H5A1 PLC sing 394 n n C5B H5A2 PLC sing 395 n n C6B C7B PLC sing 396 n n C6B H6A1 PLC sing 397 n n C6B H6A2 PLC sing 398 n n C7B C8B PLC sing 399 n n C7B H7A1 PLC sing 400 n n C7B H7A2 PLC sing 401 n n C8B C9B PLC sing 402 n n C8B H8A1 PLC sing 403 n n C8B H8A2 PLC sing 404 n n C9B CAA PLC sing 405 n n C9B H9A1 PLC sing 406 n n C9B H9A2 PLC sing 407 n n CAA CBA PLC sing 408 n n CAA HTA1 PLC sing 409 n n CAA HTA2 PLC sing 410 n n CBA HEA1 PLC sing 411 n n CBA HEA2 PLC sing 412 n n CBA HEA3 PLC sing 413 n n O1P P PLC doub 414 n n O2P P PLC sing 415 n n O2P HOP2 PLC sing 416 n n O3P P PLC sing 417 n n O4P P PLC sing 418 n n # _atom_sites.entry_id 6HJA _atom_sites.fract_transf_matrix[1][1] 0.005529 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001195 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00744 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 PLC A 1 401 402 PLC PLC . G 2 PLC A 1 402 403 PLC PLC . H 2 PLC A 1 403 404 PLC PLC . I 3 CL A 1 404 405 CL CL . J 3 CL A 1 405 406 CL CL . K 4 D12 A 1 406 411 D12 LMT . L 4 D12 A 1 407 412 D12 LMT . M 3 CL A 1 408 1 CL CL . N 5 GUA A 1 409 1 GUA GUA . O 2 PLC B 1 401 402 PLC PLC . P 2 PLC B 1 402 403 PLC PLC . Q 2 PLC B 1 403 404 PLC PLC . R 3 CL B 1 404 405 CL CL . S 6 NA B 1 405 406 NA NA . T 4 D12 B 1 406 408 D12 LMT . U 3 CL B 1 407 1 CL CL . V 5 GUA B 1 408 1 GUA GUA . W 6 NA C 1 401 409 NA NA . X 2 PLC C 1 402 402 PLC PLC . Y 2 PLC C 1 403 403 PLC PLC . Z 2 PLC C 1 404 404 PLC PLC . AA 3 CL C 1 405 405 CL CL . BA 6 NA C 1 406 406 NA NA . CA 4 D12 C 1 407 408 D12 LMT . DA 3 CL C 1 408 1 CL CL . EA 2 PLC D 1 401 402 PLC PLC . FA 2 PLC D 1 402 403 PLC PLC . GA 2 PLC D 1 403 404 PLC PLC . HA 3 CL D 1 404 405 CL CL . IA 4 D12 D 1 405 408 D12 LMT . JA 5 GUA D 1 406 1 GUA GUA . KA 5 GUA D 1 407 1 GUA GUA . LA 3 CL D 1 408 2 CL CL . MA 2 PLC E 1 401 402 PLC PLC . NA 2 PLC E 1 402 404 PLC PLC . OA 3 CL E 1 403 405 CL CL . PA 6 NA E 1 404 406 NA NA . QA 4 D12 E 1 405 408 D12 LMT . RA 5 GUA E 1 406 1 GUA GUA . SA 3 CL E 1 407 1 CL CL . TA 7 HOH A 1 501 64 HOH HOH . TA 7 HOH A 2 502 27 HOH HOH . TA 7 HOH A 3 503 86 HOH HOH . TA 7 HOH A 4 504 105 HOH HOH . TA 7 HOH A 5 505 61 HOH HOH . TA 7 HOH A 6 506 106 HOH HOH . TA 7 HOH A 7 507 83 HOH HOH . TA 7 HOH A 8 508 100 HOH HOH . TA 7 HOH A 9 509 65 HOH HOH . TA 7 HOH A 10 510 19 HOH HOH . TA 7 HOH A 11 511 79 HOH HOH . TA 7 HOH A 12 512 82 HOH HOH . TA 7 HOH A 13 513 24 HOH HOH . TA 7 HOH A 14 514 7 HOH HOH . TA 7 HOH A 15 515 50 HOH HOH . TA 7 HOH A 16 516 49 HOH HOH . TA 7 HOH A 17 517 80 HOH HOH . TA 7 HOH A 18 518 98 HOH HOH . TA 7 HOH A 19 519 114 HOH HOH . UA 7 HOH B 1 501 72 HOH HOH . UA 7 HOH B 2 502 97 HOH HOH . UA 7 HOH B 3 503 28 HOH HOH . UA 7 HOH B 4 504 59 HOH HOH . UA 7 HOH B 5 505 109 HOH HOH . UA 7 HOH B 6 506 81 HOH HOH . UA 7 HOH B 7 507 56 HOH HOH . UA 7 HOH B 8 508 20 HOH HOH . UA 7 HOH B 9 509 60 HOH HOH . UA 7 HOH B 10 510 103 HOH HOH . UA 7 HOH B 11 511 74 HOH HOH . UA 7 HOH B 12 512 71 HOH HOH . UA 7 HOH B 13 513 73 HOH HOH . UA 7 HOH B 14 514 90 HOH HOH . UA 7 HOH B 15 515 33 HOH HOH . UA 7 HOH B 16 516 41 HOH HOH . UA 7 HOH B 17 517 117 HOH HOH . UA 7 HOH B 18 518 53 HOH HOH . UA 7 HOH B 19 519 91 HOH HOH . UA 7 HOH B 20 520 48 HOH HOH . UA 7 HOH B 21 521 560 HOH HOH . UA 7 HOH B 22 522 87 HOH HOH . UA 7 HOH B 23 523 540 HOH HOH . UA 7 HOH B 24 524 78 HOH HOH . UA 7 HOH B 25 525 25 HOH HOH . UA 7 HOH B 26 526 102 HOH HOH . UA 7 HOH B 27 527 101 HOH HOH . UA 7 HOH B 28 528 573 HOH HOH . UA 7 HOH B 29 529 15 HOH HOH . UA 7 HOH B 30 530 42 HOH HOH . VA 7 HOH C 1 501 29 HOH HOH . VA 7 HOH C 2 502 88 HOH HOH . VA 7 HOH C 3 503 39 HOH HOH . VA 7 HOH C 4 504 96 HOH HOH . VA 7 HOH C 5 505 63 HOH HOH . VA 7 HOH C 6 506 75 HOH HOH . VA 7 HOH C 7 507 62 HOH HOH . VA 7 HOH C 8 508 107 HOH HOH . VA 7 HOH C 9 509 92 HOH HOH . VA 7 HOH C 10 510 115 HOH HOH . VA 7 HOH C 11 511 35 HOH HOH . VA 7 HOH C 12 512 76 HOH HOH . VA 7 HOH C 13 513 11 HOH HOH . VA 7 HOH C 14 514 12 HOH HOH . VA 7 HOH C 15 515 40 HOH HOH . VA 7 HOH C 16 516 6 HOH HOH . VA 7 HOH C 17 517 549 HOH HOH . VA 7 HOH C 18 518 52 HOH HOH . VA 7 HOH C 19 519 108 HOH HOH . VA 7 HOH C 20 520 47 HOH HOH . VA 7 HOH C 21 521 36 HOH HOH . VA 7 HOH C 22 522 14 HOH HOH . VA 7 HOH C 23 523 26 HOH HOH . VA 7 HOH C 24 524 44 HOH HOH . WA 7 HOH D 1 501 58 HOH HOH . WA 7 HOH D 2 502 34 HOH HOH . WA 7 HOH D 3 503 77 HOH HOH . WA 7 HOH D 4 504 84 HOH HOH . WA 7 HOH D 5 505 55 HOH HOH . WA 7 HOH D 6 506 37 HOH HOH . WA 7 HOH D 7 507 93 HOH HOH . WA 7 HOH D 8 508 30 HOH HOH . WA 7 HOH D 9 509 89 HOH HOH . WA 7 HOH D 10 510 575 HOH HOH . WA 7 HOH D 11 511 69 HOH HOH . WA 7 HOH D 12 512 22 HOH HOH . WA 7 HOH D 13 513 57 HOH HOH . WA 7 HOH D 14 514 70 HOH HOH . WA 7 HOH D 15 515 54 HOH HOH . WA 7 HOH D 16 516 66 HOH HOH . WA 7 HOH D 17 517 94 HOH HOH . WA 7 HOH D 18 518 38 HOH HOH . WA 7 HOH D 19 519 46 HOH HOH . WA 7 HOH D 20 520 4 HOH HOH . WA 7 HOH D 21 521 21 HOH HOH . XA 7 HOH E 1 501 95 HOH HOH . XA 7 HOH E 2 502 116 HOH HOH . XA 7 HOH E 3 503 31 HOH HOH . XA 7 HOH E 4 504 110 HOH HOH . XA 7 HOH E 5 505 85 HOH HOH . XA 7 HOH E 6 506 558 HOH HOH . XA 7 HOH E 7 507 32 HOH HOH . XA 7 HOH E 8 508 112 HOH HOH . XA 7 HOH E 9 509 68 HOH HOH . XA 7 HOH E 10 510 3 HOH HOH . XA 7 HOH E 11 511 67 HOH HOH . XA 7 HOH E 12 512 99 HOH HOH . XA 7 HOH E 13 513 111 HOH HOH . XA 7 HOH E 14 514 51 HOH HOH . XA 7 HOH E 15 515 104 HOH HOH . XA 7 HOH E 16 516 45 HOH HOH . XA 7 HOH E 17 517 9 HOH HOH . XA 7 HOH E 18 518 23 HOH HOH . XA 7 HOH E 19 519 17 HOH HOH . XA 7 HOH E 20 520 556 HOH HOH . XA 7 HOH E 21 521 18 HOH HOH . XA 7 HOH E 22 522 113 HOH HOH . XA 7 HOH E 23 523 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C' PLC . . . Q 2 35.629 -36.246 60.964 1 130.01 ? C' PLC 403 B 1 HETATM 2 C C1' PLC . . . Q 2 34.585 -35.579 60.104 1 127.68 ? C1' PLC 403 B 1 HETATM 3 C C2' PLC . . . Q 2 33.428 -36.561 59.831 1 128.83 ? C2' PLC 403 B 1 HETATM 4 C C3' PLC . . . Q 2 32.311 -35.882 59.031 1 125.32 ? C3' PLC 403 B 1 HETATM 5 C C4' PLC . . . Q 2 31.231 -36.9 58.637 1 126.68 ? C4' PLC 403 B 1 HETATM 6 C C5' PLC . . . Q 2 30.094 -36.199 57.885 1 124.03 ? C5' PLC 403 B 1 HETATM 7 C C6' PLC . . . Q 2 28.961 -37.183 57.572 1 126.11 ? C6' PLC 403 B 1 HETATM 8 C C7' PLC . . . Q 2 27.731 -36.423 57.054 1 124.48 ? C7' PLC 403 B 1 HETATM 9 C C8' PLC . . . Q 2 26.567 -37.369 56.699 1 126.67 ? C8' PLC 403 B 1 HETATM 10 C C9' PLC . . . Q 2 25.499 -36.611 55.887 1 124.16 ? C9' PLC 403 B 1 HETATM 11 C CA' PLC . . . Q 2 24.476 -37.562 55.254 1 125.58 ? CA' PLC 403 B 1 HETATM 12 C CB' PLC . . . Q 2 23.746 -36.873 54.1 1 123.26 ? CB' PLC 403 B 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 12 #