data_6HJA
#
_model_server_result.job_id            yiiADL-TbotBKbVsvqHGJA 
_model_server_result.datetime_utc      '2024-11-08 11:38:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hja 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":406}' 
#
_entry.id    6HJA 
#
_exptl.entry_id    6HJA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              170.335 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECANE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.2 
_cell.angle_gamma         90 
_cell.entry_id            6HJA 
_cell.length_a            180.866 
_cell.length_b            134.412 
_cell.length_c            160.309 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HJA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 K N N 
? 4 L N N 
? 4 T N N 
? 4 CA N N 
? 4 IA N N 
? 4 QA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 TA O HOH . A HOH 515 1_555 W NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? 
metalc ? metalc2 B O PRO 110 B PRO 68 1_555 S NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.106 ? 
metalc ? metalc3 B O ILE 113 B ILE 71 1_555 S NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc4 C O ILE 113 C ILE 71 1_555 BA NA NA . C NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? 
metalc ? metalc5 W NA NA . C NA 401 1_555 VA O HOH . C HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.873 ? 
metalc ? metalc6 E O ILE 113 E ILE 71 1_555 PA NA NA . E NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? 
#
_chem_comp.formula           'C12 H26' 
_chem_comp.formula_weight    170.335 
_chem_comp.id                D12 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 D12 sing 83 n n 
C1 H11 D12 sing 84 n n 
C1 H12 D12 sing 85 n n 
C1 H13 D12 sing 86 n n 
C2 C3 D12 sing 87 n n 
C2 H21 D12 sing 88 n n 
C2 H22 D12 sing 89 n n 
C3 C4 D12 sing 90 n n 
C3 H31 D12 sing 91 n n 
C3 H32 D12 sing 92 n n 
C4 C5 D12 sing 93 n n 
C4 H41 D12 sing 94 n n 
C4 H42 D12 sing 95 n n 
C5 C6 D12 sing 96 n n 
C5 H51 D12 sing 97 n n 
C5 H52 D12 sing 98 n n 
C6 C7 D12 sing 99 n n 
C6 H61 D12 sing 100 n n 
C6 H62 D12 sing 101 n n 
C7 C8 D12 sing 102 n n 
C7 H71 D12 sing 103 n n 
C7 H72 D12 sing 104 n n 
C8 C9 D12 sing 105 n n 
C8 H81 D12 sing 106 n n 
C8 H82 D12 sing 107 n n 
C9 C10 D12 sing 108 n n 
C9 H91 D12 sing 109 n n 
C9 H92 D12 sing 110 n n 
C10 C11 D12 sing 111 n n 
C10 H101 D12 sing 112 n n 
C10 H102 D12 sing 113 n n 
C11 C12 D12 sing 114 n n 
C11 H111 D12 sing 115 n n 
C11 H112 D12 sing 116 n n 
C12 H121 D12 sing 117 n n 
C12 H122 D12 sing 118 n n 
C12 H123 D12 sing 119 n n 
#
_atom_sites.entry_id                     6HJA 
_atom_sites.fract_transf_matrix[1][1]    0.005529 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001195 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00744 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006382 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 PLC A 1 401 402 PLC PLC . 
G 2 PLC A 1 402 403 PLC PLC . 
H 2 PLC A 1 403 404 PLC PLC . 
I 3 CL A 1 404 405 CL CL . 
J 3 CL A 1 405 406 CL CL . 
K 4 D12 A 1 406 411 D12 LMT . 
L 4 D12 A 1 407 412 D12 LMT . 
M 3 CL A 1 408 1 CL CL . 
N 5 GUA A 1 409 1 GUA GUA . 
O 2 PLC B 1 401 402 PLC PLC . 
P 2 PLC B 1 402 403 PLC PLC . 
Q 2 PLC B 1 403 404 PLC PLC . 
R 3 CL B 1 404 405 CL CL . 
S 6 NA B 1 405 406 NA NA . 
T 4 D12 B 1 406 408 D12 LMT . 
U 3 CL B 1 407 1 CL CL . 
V 5 GUA B 1 408 1 GUA GUA . 
W 6 NA C 1 401 409 NA NA . 
X 2 PLC C 1 402 402 PLC PLC . 
Y 2 PLC C 1 403 403 PLC PLC . 
Z 2 PLC C 1 404 404 PLC PLC . 
AA 3 CL C 1 405 405 CL CL . 
BA 6 NA C 1 406 406 NA NA . 
CA 4 D12 C 1 407 408 D12 LMT . 
DA 3 CL C 1 408 1 CL CL . 
EA 2 PLC D 1 401 402 PLC PLC . 
FA 2 PLC D 1 402 403 PLC PLC . 
GA 2 PLC D 1 403 404 PLC PLC . 
HA 3 CL D 1 404 405 CL CL . 
IA 4 D12 D 1 405 408 D12 LMT . 
JA 5 GUA D 1 406 1 GUA GUA . 
KA 5 GUA D 1 407 1 GUA GUA . 
LA 3 CL D 1 408 2 CL CL . 
MA 2 PLC E 1 401 402 PLC PLC . 
NA 2 PLC E 1 402 404 PLC PLC . 
OA 3 CL E 1 403 405 CL CL . 
PA 6 NA E 1 404 406 NA NA . 
QA 4 D12 E 1 405 408 D12 LMT . 
RA 5 GUA E 1 406 1 GUA GUA . 
SA 3 CL E 1 407 1 CL CL . 
TA 7 HOH A 1 501 64 HOH HOH . 
TA 7 HOH A 2 502 27 HOH HOH . 
TA 7 HOH A 3 503 86 HOH HOH . 
TA 7 HOH A 4 504 105 HOH HOH . 
TA 7 HOH A 5 505 61 HOH HOH . 
TA 7 HOH A 6 506 106 HOH HOH . 
TA 7 HOH A 7 507 83 HOH HOH . 
TA 7 HOH A 8 508 100 HOH HOH . 
TA 7 HOH A 9 509 65 HOH HOH . 
TA 7 HOH A 10 510 19 HOH HOH . 
TA 7 HOH A 11 511 79 HOH HOH . 
TA 7 HOH A 12 512 82 HOH HOH . 
TA 7 HOH A 13 513 24 HOH HOH . 
TA 7 HOH A 14 514 7 HOH HOH . 
TA 7 HOH A 15 515 50 HOH HOH . 
TA 7 HOH A 16 516 49 HOH HOH . 
TA 7 HOH A 17 517 80 HOH HOH . 
TA 7 HOH A 18 518 98 HOH HOH . 
TA 7 HOH A 19 519 114 HOH HOH . 
UA 7 HOH B 1 501 72 HOH HOH . 
UA 7 HOH B 2 502 97 HOH HOH . 
UA 7 HOH B 3 503 28 HOH HOH . 
UA 7 HOH B 4 504 59 HOH HOH . 
UA 7 HOH B 5 505 109 HOH HOH . 
UA 7 HOH B 6 506 81 HOH HOH . 
UA 7 HOH B 7 507 56 HOH HOH . 
UA 7 HOH B 8 508 20 HOH HOH . 
UA 7 HOH B 9 509 60 HOH HOH . 
UA 7 HOH B 10 510 103 HOH HOH . 
UA 7 HOH B 11 511 74 HOH HOH . 
UA 7 HOH B 12 512 71 HOH HOH . 
UA 7 HOH B 13 513 73 HOH HOH . 
UA 7 HOH B 14 514 90 HOH HOH . 
UA 7 HOH B 15 515 33 HOH HOH . 
UA 7 HOH B 16 516 41 HOH HOH . 
UA 7 HOH B 17 517 117 HOH HOH . 
UA 7 HOH B 18 518 53 HOH HOH . 
UA 7 HOH B 19 519 91 HOH HOH . 
UA 7 HOH B 20 520 48 HOH HOH . 
UA 7 HOH B 21 521 560 HOH HOH . 
UA 7 HOH B 22 522 87 HOH HOH . 
UA 7 HOH B 23 523 540 HOH HOH . 
UA 7 HOH B 24 524 78 HOH HOH . 
UA 7 HOH B 25 525 25 HOH HOH . 
UA 7 HOH B 26 526 102 HOH HOH . 
UA 7 HOH B 27 527 101 HOH HOH . 
UA 7 HOH B 28 528 573 HOH HOH . 
UA 7 HOH B 29 529 15 HOH HOH . 
UA 7 HOH B 30 530 42 HOH HOH . 
VA 7 HOH C 1 501 29 HOH HOH . 
VA 7 HOH C 2 502 88 HOH HOH . 
VA 7 HOH C 3 503 39 HOH HOH . 
VA 7 HOH C 4 504 96 HOH HOH . 
VA 7 HOH C 5 505 63 HOH HOH . 
VA 7 HOH C 6 506 75 HOH HOH . 
VA 7 HOH C 7 507 62 HOH HOH . 
VA 7 HOH C 8 508 107 HOH HOH . 
VA 7 HOH C 9 509 92 HOH HOH . 
VA 7 HOH C 10 510 115 HOH HOH . 
VA 7 HOH C 11 511 35 HOH HOH . 
VA 7 HOH C 12 512 76 HOH HOH . 
VA 7 HOH C 13 513 11 HOH HOH . 
VA 7 HOH C 14 514 12 HOH HOH . 
VA 7 HOH C 15 515 40 HOH HOH . 
VA 7 HOH C 16 516 6 HOH HOH . 
VA 7 HOH C 17 517 549 HOH HOH . 
VA 7 HOH C 18 518 52 HOH HOH . 
VA 7 HOH C 19 519 108 HOH HOH . 
VA 7 HOH C 20 520 47 HOH HOH . 
VA 7 HOH C 21 521 36 HOH HOH . 
VA 7 HOH C 22 522 14 HOH HOH . 
VA 7 HOH C 23 523 26 HOH HOH . 
VA 7 HOH C 24 524 44 HOH HOH . 
WA 7 HOH D 1 501 58 HOH HOH . 
WA 7 HOH D 2 502 34 HOH HOH . 
WA 7 HOH D 3 503 77 HOH HOH . 
WA 7 HOH D 4 504 84 HOH HOH . 
WA 7 HOH D 5 505 55 HOH HOH . 
WA 7 HOH D 6 506 37 HOH HOH . 
WA 7 HOH D 7 507 93 HOH HOH . 
WA 7 HOH D 8 508 30 HOH HOH . 
WA 7 HOH D 9 509 89 HOH HOH . 
WA 7 HOH D 10 510 575 HOH HOH . 
WA 7 HOH D 11 511 69 HOH HOH . 
WA 7 HOH D 12 512 22 HOH HOH . 
WA 7 HOH D 13 513 57 HOH HOH . 
WA 7 HOH D 14 514 70 HOH HOH . 
WA 7 HOH D 15 515 54 HOH HOH . 
WA 7 HOH D 16 516 66 HOH HOH . 
WA 7 HOH D 17 517 94 HOH HOH . 
WA 7 HOH D 18 518 38 HOH HOH . 
WA 7 HOH D 19 519 46 HOH HOH . 
WA 7 HOH D 20 520 4 HOH HOH . 
WA 7 HOH D 21 521 21 HOH HOH . 
XA 7 HOH E 1 501 95 HOH HOH . 
XA 7 HOH E 2 502 116 HOH HOH . 
XA 7 HOH E 3 503 31 HOH HOH . 
XA 7 HOH E 4 504 110 HOH HOH . 
XA 7 HOH E 5 505 85 HOH HOH . 
XA 7 HOH E 6 506 558 HOH HOH . 
XA 7 HOH E 7 507 32 HOH HOH . 
XA 7 HOH E 8 508 112 HOH HOH . 
XA 7 HOH E 9 509 68 HOH HOH . 
XA 7 HOH E 10 510 3 HOH HOH . 
XA 7 HOH E 11 511 67 HOH HOH . 
XA 7 HOH E 12 512 99 HOH HOH . 
XA 7 HOH E 13 513 111 HOH HOH . 
XA 7 HOH E 14 514 51 HOH HOH . 
XA 7 HOH E 15 515 104 HOH HOH . 
XA 7 HOH E 16 516 45 HOH HOH . 
XA 7 HOH E 17 517 9 HOH HOH . 
XA 7 HOH E 18 518 23 HOH HOH . 
XA 7 HOH E 19 519 17 HOH HOH . 
XA 7 HOH E 20 520 556 HOH HOH . 
XA 7 HOH E 21 521 18 HOH HOH . 
XA 7 HOH E 22 522 113 HOH HOH . 
XA 7 HOH E 23 523 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 D12 . . . K 4 51.844 -27.343 37.395 1 76.82 ? C1 D12 406 A 1 
HETATM 2 C C2 D12 . . . K 4 52.753 -26.523 38.371 1 78.06 ? C2 D12 406 A 1 
HETATM 3 C C3 D12 . . . K 4 53.102 -27.344 39.648 1 74.78 ? C3 D12 406 A 1 
HETATM 4 C C4 D12 . . . K 4 54.019 -26.537 40.593 1 72.92 ? C4 D12 406 A 1 
HETATM 5 C C5 D12 . . . K 4 54.205 -27.244 41.935 1 75.43 ? C5 D12 406 A 1 
HETATM 6 C C6 D12 . . . K 4 54.987 -26.376 42.933 1 78.02 ? C6 D12 406 A 1 
HETATM 7 C C7 D12 . . . K 4 55.624 -27.254 44.091 1 81.27 ? C7 D12 406 A 1 
HETATM 8 C C8 D12 . . . K 4 56.597 -26.494 45.018 1 78.14 ? C8 D12 406 A 1 
HETATM 9 C C9 D12 . . . K 4 56.784 -27.28 46.324 1 83.25 ? C9 D12 406 A 1 
HETATM 10 C C10 D12 . . . K 4 57.68 -26.537 47.379 1 84.44 ? C10 D12 406 A 1 
HETATM 11 C C11 D12 . . . K 4 57.787 -27.37 48.684 1 85.64 ? C11 D12 406 A 1 
HETATM 12 C C12 D12 . . . K 4 58.383 -26.615 49.899 1 87.2 ? C12 D12 406 A 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           12 
#