data_6HJB # _model_server_result.job_id '_BJ-vNDLoC56Oorv6KGqGg' _model_server_result.datetime_utc '2024-11-29 17:24:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hjb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":404}' # _entry.id 6HJB # _exptl.entry_id 6HJB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.35 _cell.angle_gamma 90 _cell.entry_id 6HJB _cell.length_a 180.099 _cell.length_b 133.366 _cell.length_c 158.987 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HJB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 P N N ? 5 X N N ? 5 FA N N ? 5 KA N N ? 5 OA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PRO 110 A PRO 68 1_555 I NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc2 A O ILE 113 A ILE 71 1_555 I NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc3 B O PRO 110 B PRO 68 1_555 O NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc4 B O ILE 113 B ILE 71 1_555 O NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc5 C O PRO 110 C PRO 68 1_555 W NA NA . C NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc6 C O ILE 113 C ILE 71 1_555 W NA NA . C NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc7 D O PRO 110 D PRO 68 1_555 EA NA NA . D NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc8 D O ILE 113 D ILE 71 1_555 EA NA NA . D NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc9 E O PRO 110 E PRO 68 1_555 NA NA NA . E NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc10 E O ILE 113 E ILE 71 1_555 NA NA NA . E NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 194 n n C1B O1B LMT sing 195 n n C1B O5B LMT sing 196 n n C1B H1B LMT sing 197 n n C2B C3B LMT sing 198 n n C2B O2B LMT sing 199 n n C2B H2B LMT sing 200 n n C3B C4B LMT sing 201 n n C3B O3B LMT sing 202 n n C3B H3B LMT sing 203 n n C4B C5B LMT sing 204 n n C4B O4' LMT sing 205 n n C4B H4B LMT sing 206 n n C5B C6B LMT sing 207 n n C5B O5B LMT sing 208 n n C5B H5B LMT sing 209 n n C6B O6B LMT sing 210 n n C6B "H6'2" LMT sing 211 n n C6B "H6'1" LMT sing 212 n n O1B C4' LMT sing 213 n n O2B H2O1 LMT sing 214 n n O3B H3O1 LMT sing 215 n n O4' H4O1 LMT sing 216 n n O6B H6B LMT sing 217 n n C1' C2' LMT sing 218 n n C1' O1' LMT sing 219 n n C1' O5' LMT sing 220 n n C1' H1' LMT sing 221 n n C2' C3' LMT sing 222 n n C2' O2' LMT sing 223 n n C2' H2' LMT sing 224 n n C3' C4' LMT sing 225 n n C3' O3' LMT sing 226 n n C3' H3' LMT sing 227 n n C4' C5' LMT sing 228 n n C4' H4' LMT sing 229 n n C5' C6' LMT sing 230 n n C5' O5' LMT sing 231 n n C5' H5' LMT sing 232 n n C6' O6' LMT sing 233 n n C6' H6D LMT sing 234 n n C6' H6E LMT sing 235 n n O1' C1 LMT sing 236 n n O2' H2O2 LMT sing 237 n n O3' H3O2 LMT sing 238 n n O6' H6' LMT sing 239 n n C1 C2 LMT sing 240 n n C1 H12 LMT sing 241 n n C1 H11 LMT sing 242 n n C2 C3 LMT sing 243 n n C2 H22 LMT sing 244 n n C2 H21 LMT sing 245 n n C3 C4 LMT sing 246 n n C3 H32 LMT sing 247 n n C3 H31 LMT sing 248 n n C4 C5 LMT sing 249 n n C4 H42 LMT sing 250 n n C4 H41 LMT sing 251 n n C5 C6 LMT sing 252 n n C5 H52 LMT sing 253 n n C5 H51 LMT sing 254 n n C6 C7 LMT sing 255 n n C6 H62 LMT sing 256 n n C6 H61 LMT sing 257 n n C7 C8 LMT sing 258 n n C7 H72 LMT sing 259 n n C7 H71 LMT sing 260 n n C8 C9 LMT sing 261 n n C8 H82 LMT sing 262 n n C8 H81 LMT sing 263 n n C9 C10 LMT sing 264 n n C9 H92 LMT sing 265 n n C9 H91 LMT sing 266 n n C10 C11 LMT sing 267 n n C10 H102 LMT sing 268 n n C10 H101 LMT sing 269 n n C11 C12 LMT sing 270 n n C11 H112 LMT sing 271 n n C11 H111 LMT sing 272 n n C12 H123 LMT sing 273 n n C12 H122 LMT sing 274 n n C12 H121 LMT sing 275 n n # _atom_sites.entry_id 6HJB _atom_sites.fract_transf_matrix[1][1] 0.005553 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001115 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007498 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006415 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 PLC A 1 401 402 PLC PLC . G 2 PLC A 1 402 404 PLC PLC . H 3 CL A 1 403 406 CL CL . I 4 NA A 1 404 408 NA NA . J 5 LMT A 1 405 412 LMT LMT . K 6 MLA A 1 406 1 MLA MLA . L 3 CL A 1 407 1 CL CL . M 3 CL A 1 408 1 CL CL . N 2 PLC B 1 401 404 PLC PLC . O 4 NA B 1 402 406 NA NA . P 5 LMT B 1 403 501 LMT LMT . Q 3 CL B 1 404 1 CL CL . R 3 CL B 1 405 1 CL CL . S 6 MLA B 1 406 1 MLA MLA . T 2 PLC B 1 407 404 PLC PLC . U 2 PLC C 1 401 402 PLC PLC . V 2 PLC C 1 402 404 PLC PLC . W 4 NA C 1 403 406 NA NA . X 5 LMT C 1 404 408 LMT LMT . Y 3 CL C 1 405 1 CL CL . Z 3 CL C 1 406 1 CL CL . AA 6 MLA C 1 407 1 MLA MLA . BA 2 PLC C 1 408 402 PLC PLC . CA 2 PLC D 1 401 402 PLC PLC . DA 2 PLC D 1 402 404 PLC PLC . EA 4 NA D 1 403 406 NA NA . FA 5 LMT D 1 404 408 LMT LMT . GA 3 CL D 1 405 1 CL CL . HA 3 CL D 1 406 1 CL CL . IA 6 MLA D 1 407 1 MLA MLA . JA 4 NA D 1 408 1 NA NA . KA 5 LMT E 1 401 411 LMT LMT . LA 2 PLC E 1 402 402 PLC PLC . MA 2 PLC E 1 403 404 PLC PLC . NA 4 NA E 1 404 406 NA NA . OA 5 LMT E 1 405 408 LMT LMT . PA 3 CL E 1 406 1 CL CL . QA 3 CL E 1 407 1 CL CL . RA 6 MLA E 1 408 1 MLA MLA . SA 7 HOH A 1 501 30 HOH HOH . SA 7 HOH A 2 502 59 HOH HOH . SA 7 HOH A 3 503 1 HOH HOH . SA 7 HOH A 4 504 11 HOH HOH . SA 7 HOH A 5 505 556 HOH HOH . SA 7 HOH A 6 506 5 HOH HOH . SA 7 HOH A 7 507 27 HOH HOH . SA 7 HOH A 8 508 21 HOH HOH . SA 7 HOH A 9 509 2 HOH HOH . SA 7 HOH A 10 510 54 HOH HOH . SA 7 HOH A 11 511 18 HOH HOH . SA 7 HOH A 12 512 600 HOH HOH . SA 7 HOH A 13 513 537 HOH HOH . SA 7 HOH A 14 514 504 HOH HOH . SA 7 HOH A 15 515 577 HOH HOH . SA 7 HOH A 16 516 4 HOH HOH . SA 7 HOH A 17 517 6 HOH HOH . SA 7 HOH A 18 518 10 HOH HOH . SA 7 HOH A 19 519 22 HOH HOH . SA 7 HOH A 20 520 48 HOH HOH . SA 7 HOH A 21 521 542 HOH HOH . SA 7 HOH A 22 522 55 HOH HOH . SA 7 HOH A 23 523 610 HOH HOH . SA 7 HOH A 24 524 572 HOH HOH . SA 7 HOH A 25 525 37 HOH HOH . SA 7 HOH A 26 526 3 HOH HOH . SA 7 HOH A 27 527 565 HOH HOH . SA 7 HOH A 28 528 601 HOH HOH . SA 7 HOH A 29 529 61 HOH HOH . SA 7 HOH A 30 530 25 HOH HOH . SA 7 HOH A 31 531 611 HOH HOH . SA 7 HOH A 32 532 567 HOH HOH . SA 7 HOH A 33 533 26 HOH HOH . TA 7 HOH B 1 501 35 HOH HOH . TA 7 HOH B 2 502 46 HOH HOH . TA 7 HOH B 3 503 49 HOH HOH . TA 7 HOH B 4 504 34 HOH HOH . TA 7 HOH B 5 505 564 HOH HOH . TA 7 HOH B 6 506 33 HOH HOH . TA 7 HOH B 7 507 535 HOH HOH . TA 7 HOH B 8 508 62 HOH HOH . TA 7 HOH B 9 509 523 HOH HOH . TA 7 HOH B 10 510 19 HOH HOH . TA 7 HOH B 11 511 32 HOH HOH . TA 7 HOH B 12 512 1 HOH HOH . TA 7 HOH B 13 513 5 HOH HOH . TA 7 HOH B 14 514 556 HOH HOH . TA 7 HOH B 15 515 63 HOH HOH . TA 7 HOH B 16 516 608 HOH HOH . TA 7 HOH B 17 517 10 HOH HOH . TA 7 HOH B 18 518 8 HOH HOH . TA 7 HOH B 19 519 52 HOH HOH . TA 7 HOH B 20 520 572 HOH HOH . TA 7 HOH B 21 521 5 HOH HOH . TA 7 HOH B 22 522 529 HOH HOH . TA 7 HOH B 23 523 550 HOH HOH . TA 7 HOH B 24 524 31 HOH HOH . TA 7 HOH B 25 525 568 HOH HOH . TA 7 HOH B 26 526 582 HOH HOH . TA 7 HOH B 27 527 517 HOH HOH . TA 7 HOH B 28 528 47 HOH HOH . TA 7 HOH B 29 529 520 HOH HOH . TA 7 HOH B 30 530 578 HOH HOH . TA 7 HOH B 31 531 558 HOH HOH . TA 7 HOH B 32 532 540 HOH HOH . TA 7 HOH B 33 533 622 HOH HOH . TA 7 HOH B 34 534 505 HOH HOH . TA 7 HOH B 35 535 512 HOH HOH . TA 7 HOH B 36 536 583 HOH HOH . UA 7 HOH C 1 501 64 HOH HOH . UA 7 HOH C 2 502 17 HOH HOH . UA 7 HOH C 3 503 555 HOH HOH . UA 7 HOH C 4 504 507 HOH HOH . UA 7 HOH C 5 505 16 HOH HOH . UA 7 HOH C 6 506 565 HOH HOH . UA 7 HOH C 7 507 51 HOH HOH . UA 7 HOH C 8 508 11 HOH HOH . UA 7 HOH C 9 509 14 HOH HOH . UA 7 HOH C 10 510 592 HOH HOH . UA 7 HOH C 11 511 13 HOH HOH . UA 7 HOH C 12 512 547 HOH HOH . UA 7 HOH C 13 513 56 HOH HOH . UA 7 HOH C 14 514 510 HOH HOH . UA 7 HOH C 15 515 585 HOH HOH . UA 7 HOH C 16 516 593 HOH HOH . UA 7 HOH C 17 517 525 HOH HOH . UA 7 HOH C 18 518 584 HOH HOH . UA 7 HOH C 19 519 504 HOH HOH . UA 7 HOH C 20 520 549 HOH HOH . UA 7 HOH C 21 521 503 HOH HOH . UA 7 HOH C 22 522 586 HOH HOH . UA 7 HOH C 23 523 563 HOH HOH . UA 7 HOH C 24 524 13 HOH HOH . UA 7 HOH C 25 525 14 HOH HOH . VA 7 HOH D 1 501 43 HOH HOH . VA 7 HOH D 2 502 57 HOH HOH . VA 7 HOH D 3 503 50 HOH HOH . VA 7 HOH D 4 504 12 HOH HOH . VA 7 HOH D 5 505 4 HOH HOH . VA 7 HOH D 6 506 42 HOH HOH . VA 7 HOH D 7 507 7 HOH HOH . VA 7 HOH D 8 508 548 HOH HOH . VA 7 HOH D 9 509 39 HOH HOH . VA 7 HOH D 10 510 7 HOH HOH . VA 7 HOH D 11 511 9 HOH HOH . VA 7 HOH D 12 512 53 HOH HOH . VA 7 HOH D 13 513 60 HOH HOH . VA 7 HOH D 14 514 549 HOH HOH . VA 7 HOH D 15 515 504 HOH HOH . VA 7 HOH D 16 516 23 HOH HOH . VA 7 HOH D 17 517 561 HOH HOH . VA 7 HOH D 18 518 41 HOH HOH . VA 7 HOH D 19 519 536 HOH HOH . VA 7 HOH D 20 520 508 HOH HOH . VA 7 HOH D 21 521 2 HOH HOH . VA 7 HOH D 22 522 503 HOH HOH . VA 7 HOH D 23 523 45 HOH HOH . VA 7 HOH D 24 524 557 HOH HOH . VA 7 HOH D 25 525 503 HOH HOH . VA 7 HOH D 26 526 36 HOH HOH . VA 7 HOH D 27 527 40 HOH HOH . VA 7 HOH D 28 528 588 HOH HOH . VA 7 HOH D 29 529 1 HOH HOH . VA 7 HOH D 30 530 28 HOH HOH . WA 7 HOH E 1 501 38 HOH HOH . WA 7 HOH E 2 502 44 HOH HOH . WA 7 HOH E 3 503 558 HOH HOH . WA 7 HOH E 4 504 6 HOH HOH . WA 7 HOH E 5 505 58 HOH HOH . WA 7 HOH E 6 506 3 HOH HOH . WA 7 HOH E 7 507 2 HOH HOH . WA 7 HOH E 8 508 540 HOH HOH . WA 7 HOH E 9 509 547 HOH HOH . WA 7 HOH E 10 510 522 HOH HOH . WA 7 HOH E 11 511 541 HOH HOH . WA 7 HOH E 12 512 566 HOH HOH . WA 7 HOH E 13 513 537 HOH HOH . WA 7 HOH E 14 514 20 HOH HOH . WA 7 HOH E 15 515 503 HOH HOH . WA 7 HOH E 16 516 582 HOH HOH . WA 7 HOH E 17 517 521 HOH HOH . WA 7 HOH E 18 518 560 HOH HOH . WA 7 HOH E 19 519 556 HOH HOH . WA 7 HOH E 20 520 586 HOH HOH . WA 7 HOH E 21 521 519 HOH HOH . WA 7 HOH E 22 522 544 HOH HOH . WA 7 HOH E 23 523 24 HOH HOH . WA 7 HOH E 24 524 585 HOH HOH . WA 7 HOH E 25 525 501 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LMT . . . X 5 51.806 -32.351 34.989 1 78.3 ? C1 LMT 404 C 1 HETATM 2 C C2 LMT . . . X 5 52.96 -31.661 35.784 1 79.51 ? C2 LMT 404 C 1 HETATM 3 C C3 LMT . . . X 5 52.674 -31.793 37.311 1 78.61 ? C3 LMT 404 C 1 HETATM 4 C C4 LMT . . . X 5 53.754 -31.161 38.249 1 76.05 ? C4 LMT 404 C 1 HETATM 5 C C5 LMT . . . X 5 53.406 -31.506 39.714 1 74.44 ? C5 LMT 404 C 1 HETATM 6 C C6 LMT . . . X 5 54.348 -30.888 40.782 1 72.58 ? C6 LMT 404 C 1 HETATM 7 C C7 LMT . . . X 5 53.676 -31.002 42.175 1 68.57 ? C7 LMT 404 C 1 HETATM 8 C C8 LMT . . . X 5 54.524 -30.39 43.296 1 67.95 ? C8 LMT 404 C 1 HETATM 9 C C9 LMT . . . X 5 53.735 -30.294 44.62 1 66.79 ? C9 LMT 404 C 1 HETATM 10 C C10 LMT . . . X 5 54.672 -29.897 45.77 1 70 ? C10 LMT 404 C 1 HETATM 11 C C11 LMT . . . X 5 53.944 -30.024 47.125 1 72.05 ? C11 LMT 404 C 1 HETATM 12 C C12 LMT . . . X 5 54.89 -29.864 48.321 1 69.57 ? C12 LMT 404 C 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #