data_6HJB
#
_model_server_result.job_id            1C0htHk-NarvaSltIdyefQ 
_model_server_result.datetime_utc      '2024-11-08 09:40:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hjb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":406}' 
#
_entry.id    6HJB 
#
_exptl.entry_id    6HJB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              104.061 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONIC ACID' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.35 
_cell.angle_gamma         90 
_cell.entry_id            6HJB 
_cell.length_a            180.099 
_cell.length_b            133.366 
_cell.length_c            158.987 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HJB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 K N N 
? 6 S N N 
? 6 AA N N 
? 6 IA N N 
? 6 RA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O PRO 110 A PRO 68 1_555 I NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? 
metalc ? metalc2 A O ILE 113 A ILE 71 1_555 I NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc3 B O PRO 110 B PRO 68 1_555 O NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? 
metalc ? metalc4 B O ILE 113 B ILE 71 1_555 O NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc5 C O PRO 110 C PRO 68 1_555 W NA NA . C NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
metalc ? metalc6 C O ILE 113 C ILE 71 1_555 W NA NA . C NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? 
metalc ? metalc7 D O PRO 110 D PRO 68 1_555 EA NA NA . D NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? 
metalc ? metalc8 D O ILE 113 D ILE 71 1_555 EA NA NA . D NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc9 E O PRO 110 E PRO 68 1_555 NA NA NA . E NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? 
metalc ? metalc10 E O ILE 113 E ILE 71 1_555 NA NA NA . E NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? 
#
_chem_comp.formula           'C3 H4 O4' 
_chem_comp.formula_weight    104.061 
_chem_comp.id                MLA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1A MLA sing 319 n n 
C1 O1B MLA doub 320 n n 
C1 C2 MLA sing 321 n n 
O1A H1A MLA sing 322 n n 
C2 C3 MLA sing 323 n n 
C2 HC21 MLA sing 324 n n 
C2 HC22 MLA sing 325 n n 
C3 O3A MLA doub 326 n n 
C3 O3B MLA sing 327 n n 
O3B H3B MLA sing 328 n n 
#
_atom_sites.entry_id                     6HJB 
_atom_sites.fract_transf_matrix[1][1]    0.005553 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001115 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007498 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006415 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 PLC A 1 401 402 PLC PLC . 
G 2 PLC A 1 402 404 PLC PLC . 
H 3 CL A 1 403 406 CL CL . 
I 4 NA A 1 404 408 NA NA . 
J 5 LMT A 1 405 412 LMT LMT . 
K 6 MLA A 1 406 1 MLA MLA . 
L 3 CL A 1 407 1 CL CL . 
M 3 CL A 1 408 1 CL CL . 
N 2 PLC B 1 401 404 PLC PLC . 
O 4 NA B 1 402 406 NA NA . 
P 5 LMT B 1 403 501 LMT LMT . 
Q 3 CL B 1 404 1 CL CL . 
R 3 CL B 1 405 1 CL CL . 
S 6 MLA B 1 406 1 MLA MLA . 
T 2 PLC B 1 407 404 PLC PLC . 
U 2 PLC C 1 401 402 PLC PLC . 
V 2 PLC C 1 402 404 PLC PLC . 
W 4 NA C 1 403 406 NA NA . 
X 5 LMT C 1 404 408 LMT LMT . 
Y 3 CL C 1 405 1 CL CL . 
Z 3 CL C 1 406 1 CL CL . 
AA 6 MLA C 1 407 1 MLA MLA . 
BA 2 PLC C 1 408 402 PLC PLC . 
CA 2 PLC D 1 401 402 PLC PLC . 
DA 2 PLC D 1 402 404 PLC PLC . 
EA 4 NA D 1 403 406 NA NA . 
FA 5 LMT D 1 404 408 LMT LMT . 
GA 3 CL D 1 405 1 CL CL . 
HA 3 CL D 1 406 1 CL CL . 
IA 6 MLA D 1 407 1 MLA MLA . 
JA 4 NA D 1 408 1 NA NA . 
KA 5 LMT E 1 401 411 LMT LMT . 
LA 2 PLC E 1 402 402 PLC PLC . 
MA 2 PLC E 1 403 404 PLC PLC . 
NA 4 NA E 1 404 406 NA NA . 
OA 5 LMT E 1 405 408 LMT LMT . 
PA 3 CL E 1 406 1 CL CL . 
QA 3 CL E 1 407 1 CL CL . 
RA 6 MLA E 1 408 1 MLA MLA . 
SA 7 HOH A 1 501 30 HOH HOH . 
SA 7 HOH A 2 502 59 HOH HOH . 
SA 7 HOH A 3 503 1 HOH HOH . 
SA 7 HOH A 4 504 11 HOH HOH . 
SA 7 HOH A 5 505 556 HOH HOH . 
SA 7 HOH A 6 506 5 HOH HOH . 
SA 7 HOH A 7 507 27 HOH HOH . 
SA 7 HOH A 8 508 21 HOH HOH . 
SA 7 HOH A 9 509 2 HOH HOH . 
SA 7 HOH A 10 510 54 HOH HOH . 
SA 7 HOH A 11 511 18 HOH HOH . 
SA 7 HOH A 12 512 600 HOH HOH . 
SA 7 HOH A 13 513 537 HOH HOH . 
SA 7 HOH A 14 514 504 HOH HOH . 
SA 7 HOH A 15 515 577 HOH HOH . 
SA 7 HOH A 16 516 4 HOH HOH . 
SA 7 HOH A 17 517 6 HOH HOH . 
SA 7 HOH A 18 518 10 HOH HOH . 
SA 7 HOH A 19 519 22 HOH HOH . 
SA 7 HOH A 20 520 48 HOH HOH . 
SA 7 HOH A 21 521 542 HOH HOH . 
SA 7 HOH A 22 522 55 HOH HOH . 
SA 7 HOH A 23 523 610 HOH HOH . 
SA 7 HOH A 24 524 572 HOH HOH . 
SA 7 HOH A 25 525 37 HOH HOH . 
SA 7 HOH A 26 526 3 HOH HOH . 
SA 7 HOH A 27 527 565 HOH HOH . 
SA 7 HOH A 28 528 601 HOH HOH . 
SA 7 HOH A 29 529 61 HOH HOH . 
SA 7 HOH A 30 530 25 HOH HOH . 
SA 7 HOH A 31 531 611 HOH HOH . 
SA 7 HOH A 32 532 567 HOH HOH . 
SA 7 HOH A 33 533 26 HOH HOH . 
TA 7 HOH B 1 501 35 HOH HOH . 
TA 7 HOH B 2 502 46 HOH HOH . 
TA 7 HOH B 3 503 49 HOH HOH . 
TA 7 HOH B 4 504 34 HOH HOH . 
TA 7 HOH B 5 505 564 HOH HOH . 
TA 7 HOH B 6 506 33 HOH HOH . 
TA 7 HOH B 7 507 535 HOH HOH . 
TA 7 HOH B 8 508 62 HOH HOH . 
TA 7 HOH B 9 509 523 HOH HOH . 
TA 7 HOH B 10 510 19 HOH HOH . 
TA 7 HOH B 11 511 32 HOH HOH . 
TA 7 HOH B 12 512 1 HOH HOH . 
TA 7 HOH B 13 513 5 HOH HOH . 
TA 7 HOH B 14 514 556 HOH HOH . 
TA 7 HOH B 15 515 63 HOH HOH . 
TA 7 HOH B 16 516 608 HOH HOH . 
TA 7 HOH B 17 517 10 HOH HOH . 
TA 7 HOH B 18 518 8 HOH HOH . 
TA 7 HOH B 19 519 52 HOH HOH . 
TA 7 HOH B 20 520 572 HOH HOH . 
TA 7 HOH B 21 521 5 HOH HOH . 
TA 7 HOH B 22 522 529 HOH HOH . 
TA 7 HOH B 23 523 550 HOH HOH . 
TA 7 HOH B 24 524 31 HOH HOH . 
TA 7 HOH B 25 525 568 HOH HOH . 
TA 7 HOH B 26 526 582 HOH HOH . 
TA 7 HOH B 27 527 517 HOH HOH . 
TA 7 HOH B 28 528 47 HOH HOH . 
TA 7 HOH B 29 529 520 HOH HOH . 
TA 7 HOH B 30 530 578 HOH HOH . 
TA 7 HOH B 31 531 558 HOH HOH . 
TA 7 HOH B 32 532 540 HOH HOH . 
TA 7 HOH B 33 533 622 HOH HOH . 
TA 7 HOH B 34 534 505 HOH HOH . 
TA 7 HOH B 35 535 512 HOH HOH . 
TA 7 HOH B 36 536 583 HOH HOH . 
UA 7 HOH C 1 501 64 HOH HOH . 
UA 7 HOH C 2 502 17 HOH HOH . 
UA 7 HOH C 3 503 555 HOH HOH . 
UA 7 HOH C 4 504 507 HOH HOH . 
UA 7 HOH C 5 505 16 HOH HOH . 
UA 7 HOH C 6 506 565 HOH HOH . 
UA 7 HOH C 7 507 51 HOH HOH . 
UA 7 HOH C 8 508 11 HOH HOH . 
UA 7 HOH C 9 509 14 HOH HOH . 
UA 7 HOH C 10 510 592 HOH HOH . 
UA 7 HOH C 11 511 13 HOH HOH . 
UA 7 HOH C 12 512 547 HOH HOH . 
UA 7 HOH C 13 513 56 HOH HOH . 
UA 7 HOH C 14 514 510 HOH HOH . 
UA 7 HOH C 15 515 585 HOH HOH . 
UA 7 HOH C 16 516 593 HOH HOH . 
UA 7 HOH C 17 517 525 HOH HOH . 
UA 7 HOH C 18 518 584 HOH HOH . 
UA 7 HOH C 19 519 504 HOH HOH . 
UA 7 HOH C 20 520 549 HOH HOH . 
UA 7 HOH C 21 521 503 HOH HOH . 
UA 7 HOH C 22 522 586 HOH HOH . 
UA 7 HOH C 23 523 563 HOH HOH . 
UA 7 HOH C 24 524 13 HOH HOH . 
UA 7 HOH C 25 525 14 HOH HOH . 
VA 7 HOH D 1 501 43 HOH HOH . 
VA 7 HOH D 2 502 57 HOH HOH . 
VA 7 HOH D 3 503 50 HOH HOH . 
VA 7 HOH D 4 504 12 HOH HOH . 
VA 7 HOH D 5 505 4 HOH HOH . 
VA 7 HOH D 6 506 42 HOH HOH . 
VA 7 HOH D 7 507 7 HOH HOH . 
VA 7 HOH D 8 508 548 HOH HOH . 
VA 7 HOH D 9 509 39 HOH HOH . 
VA 7 HOH D 10 510 7 HOH HOH . 
VA 7 HOH D 11 511 9 HOH HOH . 
VA 7 HOH D 12 512 53 HOH HOH . 
VA 7 HOH D 13 513 60 HOH HOH . 
VA 7 HOH D 14 514 549 HOH HOH . 
VA 7 HOH D 15 515 504 HOH HOH . 
VA 7 HOH D 16 516 23 HOH HOH . 
VA 7 HOH D 17 517 561 HOH HOH . 
VA 7 HOH D 18 518 41 HOH HOH . 
VA 7 HOH D 19 519 536 HOH HOH . 
VA 7 HOH D 20 520 508 HOH HOH . 
VA 7 HOH D 21 521 2 HOH HOH . 
VA 7 HOH D 22 522 503 HOH HOH . 
VA 7 HOH D 23 523 45 HOH HOH . 
VA 7 HOH D 24 524 557 HOH HOH . 
VA 7 HOH D 25 525 503 HOH HOH . 
VA 7 HOH D 26 526 36 HOH HOH . 
VA 7 HOH D 27 527 40 HOH HOH . 
VA 7 HOH D 28 528 588 HOH HOH . 
VA 7 HOH D 29 529 1 HOH HOH . 
VA 7 HOH D 30 530 28 HOH HOH . 
WA 7 HOH E 1 501 38 HOH HOH . 
WA 7 HOH E 2 502 44 HOH HOH . 
WA 7 HOH E 3 503 558 HOH HOH . 
WA 7 HOH E 4 504 6 HOH HOH . 
WA 7 HOH E 5 505 58 HOH HOH . 
WA 7 HOH E 6 506 3 HOH HOH . 
WA 7 HOH E 7 507 2 HOH HOH . 
WA 7 HOH E 8 508 540 HOH HOH . 
WA 7 HOH E 9 509 547 HOH HOH . 
WA 7 HOH E 10 510 522 HOH HOH . 
WA 7 HOH E 11 511 541 HOH HOH . 
WA 7 HOH E 12 512 566 HOH HOH . 
WA 7 HOH E 13 513 537 HOH HOH . 
WA 7 HOH E 14 514 20 HOH HOH . 
WA 7 HOH E 15 515 503 HOH HOH . 
WA 7 HOH E 16 516 582 HOH HOH . 
WA 7 HOH E 17 517 521 HOH HOH . 
WA 7 HOH E 18 518 560 HOH HOH . 
WA 7 HOH E 19 519 556 HOH HOH . 
WA 7 HOH E 20 520 586 HOH HOH . 
WA 7 HOH E 21 521 519 HOH HOH . 
WA 7 HOH E 22 522 544 HOH HOH . 
WA 7 HOH E 23 523 24 HOH HOH . 
WA 7 HOH E 24 524 585 HOH HOH . 
WA 7 HOH E 25 525 501 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLA . . . S 6 19.774 -16.452 17.853 1 93.12 ? C1 MLA 406 B 1 
HETATM 2 O O1A MLA . . . S 6 18.6 -16.515 17.51 1 92.84 ? O1A MLA 406 B 1 
HETATM 3 O O1B MLA . . . S 6 20.709 -16.434 16.904 1 96.65 ? O1B MLA 406 B 1 
HETATM 4 C C2 MLA . . . S 6 20.42 -16.392 19.217 1 89.86 ? C2 MLA 406 B 1 
HETATM 5 C C3 MLA . . . S 6 19.67 -15.458 20.114 1 93.68 ? C3 MLA 406 B 1 
HETATM 6 O O3A MLA . . . S 6 18.643 -14.851 19.931 1 97.55 ? O3A MLA 406 B 1 
HETATM 7 O O3B MLA . . . S 6 20.273 -15.321 21.293 1 94.19 ? O3B MLA 406 B 1 
#
_model_server_stats.io_time_ms              186 
_model_server_stats.parse_time_ms           129 
_model_server_stats.create_model_time_ms    52 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           7 
#