data_6HJJ # _model_server_result.job_id -LwePdx5RkYASxeTJNlmFg _model_server_result.datetime_utc '2025-01-25 11:08:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hjj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":508}' # _entry.id 6HJJ # _exptl.entry_id 6HJJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.253 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,5,8,11-TETRAOXATRIDECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6HJJ _cell.length_a 82.027 _cell.length_b 82.027 _cell.length_c 172.609 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HJJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H20 O4' _chem_comp.formula_weight 192.253 _chem_comp.id PGF _chem_comp.mon_nstd_flag . _chem_comp.name 2,5,8,11-TETRAOXATRIDECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 PGF sing 308 n n C7 H71 PGF sing 309 n n C7 H72 PGF sing 310 n n C7 H73 PGF sing 311 n n C8 O5 PGF sing 312 n n C8 H81 PGF sing 313 n n C8 H82 PGF sing 314 n n O5 C9 PGF sing 315 n n C9 C10 PGF sing 316 n n C9 H91 PGF sing 317 n n C9 H92 PGF sing 318 n n C10 O6 PGF sing 319 n n C10 H101 PGF sing 320 n n C10 H102 PGF sing 321 n n O6 C11 PGF sing 322 n n C11 C12 PGF sing 323 n n C11 H111 PGF sing 324 n n C11 H112 PGF sing 325 n n C12 O7 PGF sing 326 n n C12 H121 PGF sing 327 n n C12 H122 PGF sing 328 n n O7 C13 PGF sing 329 n n C13 C14 PGF sing 330 n n C13 H131 PGF sing 331 n n C13 H132 PGF sing 332 n n C14 O8 PGF sing 333 n n C14 H141 PGF sing 334 n n C14 H142 PGF sing 335 n n O8 C15 PGF sing 336 n n C15 H151 PGF sing 337 n n C15 H152 PGF sing 338 n n C15 H153 PGF sing 339 n n # _atom_sites.entry_id 6HJJ _atom_sites.fract_transf_matrix[1][1] 0.012191 _atom_sites.fract_transf_matrix[1][2] 0.007039 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014077 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005793 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 G7T A 1 501 1 G7T LIG . C 3 CL A 1 502 1 CL CL . D 3 CL A 1 503 2 CL CL . E 3 CL A 1 504 3 CL CL . F 4 ACT A 1 505 1 ACT ACT . G 4 ACT A 1 506 2 ACT ACT . H 4 ACT A 1 507 3 ACT ACT . I 5 PGF A 1 508 1 PGF PG6 . J 6 HOH A 1 601 54 HOH HOH . J 6 HOH A 2 602 95 HOH HOH . J 6 HOH A 3 603 7 HOH HOH . J 6 HOH A 4 604 1 HOH HOH . J 6 HOH A 5 605 24 HOH HOH . J 6 HOH A 6 606 4 HOH HOH . J 6 HOH A 7 607 11 HOH HOH . J 6 HOH A 8 608 8 HOH HOH . J 6 HOH A 9 609 62 HOH HOH . J 6 HOH A 10 610 89 HOH HOH . J 6 HOH A 11 611 5 HOH HOH . J 6 HOH A 12 612 3 HOH HOH . J 6 HOH A 13 613 47 HOH HOH . J 6 HOH A 14 614 29 HOH HOH . J 6 HOH A 15 615 17 HOH HOH . J 6 HOH A 16 616 69 HOH HOH . J 6 HOH A 17 617 2 HOH HOH . J 6 HOH A 18 618 71 HOH HOH . J 6 HOH A 19 619 23 HOH HOH . J 6 HOH A 20 620 53 HOH HOH . J 6 HOH A 21 621 88 HOH HOH . J 6 HOH A 22 622 81 HOH HOH . J 6 HOH A 23 623 6 HOH HOH . J 6 HOH A 24 624 12 HOH HOH . J 6 HOH A 25 625 85 HOH HOH . J 6 HOH A 26 626 19 HOH HOH . J 6 HOH A 27 627 51 HOH HOH . J 6 HOH A 28 628 27 HOH HOH . J 6 HOH A 29 629 67 HOH HOH . J 6 HOH A 30 630 70 HOH HOH . J 6 HOH A 31 631 13 HOH HOH . J 6 HOH A 32 632 25 HOH HOH . J 6 HOH A 33 633 44 HOH HOH . J 6 HOH A 34 634 43 HOH HOH . J 6 HOH A 35 635 18 HOH HOH . J 6 HOH A 36 636 22 HOH HOH . J 6 HOH A 37 637 91 HOH HOH . J 6 HOH A 38 638 72 HOH HOH . J 6 HOH A 39 639 94 HOH HOH . J 6 HOH A 40 640 90 HOH HOH . J 6 HOH A 41 641 31 HOH HOH . J 6 HOH A 42 642 30 HOH HOH . J 6 HOH A 43 643 75 HOH HOH . J 6 HOH A 44 644 57 HOH HOH . J 6 HOH A 45 645 63 HOH HOH . J 6 HOH A 46 646 26 HOH HOH . J 6 HOH A 47 647 60 HOH HOH . J 6 HOH A 48 648 28 HOH HOH . J 6 HOH A 49 649 98 HOH HOH . J 6 HOH A 50 650 45 HOH HOH . J 6 HOH A 51 651 80 HOH HOH . J 6 HOH A 52 652 93 HOH HOH . J 6 HOH A 53 653 79 HOH HOH . J 6 HOH A 54 654 65 HOH HOH . J 6 HOH A 55 655 40 HOH HOH . J 6 HOH A 56 656 48 HOH HOH . J 6 HOH A 57 657 76 HOH HOH . J 6 HOH A 58 658 61 HOH HOH . J 6 HOH A 59 659 68 HOH HOH . J 6 HOH A 60 660 66 HOH HOH . J 6 HOH A 61 661 96 HOH HOH . J 6 HOH A 62 662 73 HOH HOH . J 6 HOH A 63 663 84 HOH HOH . J 6 HOH A 64 664 64 HOH HOH . J 6 HOH A 65 665 59 HOH HOH . J 6 HOH A 66 666 92 HOH HOH . J 6 HOH A 67 667 49 HOH HOH . J 6 HOH A 68 668 56 HOH HOH . J 6 HOH A 69 669 77 HOH HOH . J 6 HOH A 70 670 83 HOH HOH . J 6 HOH A 71 671 52 HOH HOH . J 6 HOH A 72 672 33 HOH HOH . J 6 HOH A 73 673 97 HOH HOH . J 6 HOH A 74 674 78 HOH HOH . J 6 HOH A 75 675 87 HOH HOH . J 6 HOH A 76 676 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 PGF . . . I 5 15.328 -47.497 10.392 1 63.45 ? C7 PGF 508 A 1 HETATM 2 C C8 PGF . . . I 5 13.916 -47.822 9.897 1 66.02 ? C8 PGF 508 A 1 HETATM 3 O O5 PGF . . . I 5 13.953 -48.649 8.758 1 68.37 ? O5 PGF 508 A 1 HETATM 4 C C9 PGF . . . I 5 12.653 -48.789 8.067 1 63.37 ? C9 PGF 508 A 1 HETATM 5 C C10 PGF . . . I 5 12.746 -49.619 6.732 1 52.43 ? C10 PGF 508 A 1 HETATM 6 O O6 PGF . . . I 5 14.099 -49.868 6.306 1 60.99 ? O6 PGF 508 A 1 HETATM 7 C C11 PGF . . . I 5 14.209 -50.702 5.123 1 69.65 ? C11 PGF 508 A 1 HETATM 8 C C12 PGF . . . I 5 15.597 -51.281 4.972 1 75.91 ? C12 PGF 508 A 1 HETATM 9 O O7 PGF . . . I 5 16.238 -51.294 6.243 1 87.1 ? O7 PGF 508 A 1 HETATM 10 C C13 PGF . . . I 5 17.34 -52.196 6.448 1 82.38 ? C13 PGF 508 A 1 HETATM 11 C C14 PGF . . . I 5 17.387 -52.546 7.942 1 76.91 ? C14 PGF 508 A 1 HETATM 12 O O8 PGF . . . I 5 18.276 -51.676 8.656 1 74.28 ? O8 PGF 508 A 1 HETATM 13 C C15 PGF . . . I 5 17.9 -51.436 10.04 1 66.22 ? C15 PGF 508 A 1 HETATM 14 H H71 PGF . . . I 5 15.386 -47.653 11.363 1 76.14 ? H71 PGF 508 A 1 HETATM 15 H H72 PGF . . . I 5 15.547 -46.57 10.184 1 76.14 ? H72 PGF 508 A 1 HETATM 16 H H81 PGF . . . I 5 13.431 -48.267 10.595 1 79.23 ? H81 PGF 508 A 1 HETATM 17 H H82 PGF . . . I 5 13.452 -46.98 9.669 1 79.23 ? H82 PGF 508 A 1 HETATM 18 H H91 PGF . . . I 5 12.024 -49.244 8.68 1 76.04 ? H91 PGF 508 A 1 HETATM 19 H H92 PGF . . . I 5 12.305 -47.873 7.854 1 76.04 ? H92 PGF 508 A 1 HETATM 20 H H101 PGF . . . I 5 12.309 -50.468 6.862 1 62.91 ? H101 PGF 508 A 1 HETATM 21 H H102 PGF . . . I 5 12.27 -49.134 6.016 1 62.91 ? H102 PGF 508 A 1 HETATM 22 H H111 PGF . . . I 5 13.574 -51.44 5.208 1 83.58 ? H111 PGF 508 A 1 HETATM 23 H H112 PGF . . . I 5 13.98 -50.167 4.312 1 83.58 ? H112 PGF 508 A 1 HETATM 24 H H121 PGF . . . I 5 15.532 -52.186 4.631 1 91.09 ? H121 PGF 508 A 1 HETATM 25 H H122 PGF . . . I 5 16.127 -50.725 4.34 1 91.09 ? H122 PGF 508 A 1 HETATM 26 H H131 PGF . . . I 5 17.221 -53.031 5.903 1 98.85 ? H131 PGF 508 A 1 HETATM 27 H H132 PGF . . . I 5 18.176 -51.745 6.187 1 98.85 ? H132 PGF 508 A 1 HETATM 28 H H141 PGF . . . I 5 16.469 -52.461 8.321 1 92.3 ? H141 PGF 508 A 1 HETATM 29 H H142 PGF . . . I 5 17.699 -53.491 8.051 1 92.3 ? H142 PGF 508 A 1 HETATM 30 H H151 PGF . . . I 5 18.655 -51 10.513 1 79.46 ? H151 PGF 508 A 1 HETATM 31 H H152 PGF . . . I 5 17.107 -50.845 10.069 1 79.46 ? H152 PGF 508 A 1 HETATM 32 H H153 PGF . . . I 5 17.689 -52.295 10.478 1 79.46 ? H153 PGF 508 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #