data_6HK3
#
_model_server_result.job_id            z6_cli1kYcMAQT8RzWU5Iw 
_model_server_result.datetime_utc      '2024-11-19 13:39:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hk3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":403}' 
#
_entry.id    6HK3 
#
_exptl.entry_id    6HK3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         79.84 
_cell.angle_beta          76.21 
_cell.angle_gamma         89.63 
_cell.entry_id            6HK3 
_cell.length_a            64.318 
_cell.length_b            67.117 
_cell.length_c            67.238 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HK3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,J,P 1 1 
B,K,L,M,N,O,Q 2 1 
C,R 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 64.318 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
? 5 H N N 
? 5 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 181 A SER 215 1_555 A N PTR 182 A PTR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale2 A C PTR 182 A PTR 216 1_555 A N ILE 183 A ILE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale3 B C SER 181 B SER 215 1_555 B N PTR 182 B PTR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale4 B C PTR 182 B PTR 216 1_555 B N ILE 183 B ILE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 201 n n 
C1 C2 GOL sing 202 n n 
C1 H11 GOL sing 203 n n 
C1 H12 GOL sing 204 n n 
O1 HO1 GOL sing 205 n n 
C2 O2 GOL sing 206 n n 
C2 C3 GOL sing 207 n n 
C2 H2 GOL sing 208 n n 
O2 HO2 GOL sing 209 n n 
C3 O3 GOL sing 210 n n 
C3 H31 GOL sing 211 n n 
C3 H32 GOL sing 212 n n 
O3 HO3 GOL sing 213 n n 
#
_atom_sites.entry_id                     6HK3 
_atom_sites.fract_transf_matrix[1][1]    0.015548 
_atom_sites.fract_transf_matrix[1][2]    -0.0001 
_atom_sites.fract_transf_matrix[1][3]    -0.003861 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0149 
_atom_sites.fract_transf_matrix[2][3]    -0.002727 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015568 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 G8B A 1 401 1 G8B C44 . 
E 4 MLI A 1 402 2 MLI MLI . 
F 5 GOL A 1 403 1 GOL GOL . 
G 5 GOL A 1 404 3 GOL GOL . 
H 5 GOL A 1 405 4 GOL GOL . 
I 6 CL A 1 406 1 CL CL . 
J 7 DMS A 1 407 1 DMS DMS . 
K 3 G8B B 1 401 2 G8B C44 . 
L 4 MLI B 1 402 1 MLI MLI . 
M 5 GOL B 1 403 2 GOL GOL . 
N 6 CL B 1 404 2 CL CL . 
O 7 DMS B 1 405 2 DMS DMS . 
P 8 HOH A 1 501 78 HOH HOH . 
P 8 HOH A 2 502 77 HOH HOH . 
P 8 HOH A 3 503 74 HOH HOH . 
P 8 HOH A 4 504 52 HOH HOH . 
P 8 HOH A 5 505 36 HOH HOH . 
P 8 HOH A 6 506 61 HOH HOH . 
P 8 HOH A 7 507 255 HOH HOH . 
P 8 HOH A 8 508 80 HOH HOH . 
P 8 HOH A 9 509 68 HOH HOH . 
P 8 HOH A 10 510 76 HOH HOH . 
P 8 HOH A 11 511 67 HOH HOH . 
P 8 HOH A 12 512 60 HOH HOH . 
P 8 HOH A 13 513 52 HOH HOH . 
P 8 HOH A 14 514 5 HOH HOH . 
P 8 HOH A 15 515 81 HOH HOH . 
P 8 HOH A 16 516 19 HOH HOH . 
P 8 HOH A 17 517 123 HOH HOH . 
P 8 HOH A 18 518 10 HOH HOH . 
P 8 HOH A 19 519 56 HOH HOH . 
P 8 HOH A 20 520 16 HOH HOH . 
P 8 HOH A 21 521 3 HOH HOH . 
P 8 HOH A 22 522 63 HOH HOH . 
P 8 HOH A 23 523 33 HOH HOH . 
P 8 HOH A 24 524 3 HOH HOH . 
P 8 HOH A 25 525 34 HOH HOH . 
P 8 HOH A 26 526 87 HOH HOH . 
P 8 HOH A 27 527 71 HOH HOH . 
P 8 HOH A 28 528 185 HOH HOH . 
P 8 HOH A 29 529 18 HOH HOH . 
P 8 HOH A 30 530 79 HOH HOH . 
P 8 HOH A 31 531 49 HOH HOH . 
P 8 HOH A 32 532 59 HOH HOH . 
P 8 HOH A 33 533 37 HOH HOH . 
P 8 HOH A 34 534 10 HOH HOH . 
P 8 HOH A 35 535 57 HOH HOH . 
P 8 HOH A 36 536 37 HOH HOH . 
P 8 HOH A 37 537 2 HOH HOH . 
P 8 HOH A 38 538 35 HOH HOH . 
P 8 HOH A 39 539 115 HOH HOH . 
P 8 HOH A 40 540 20 HOH HOH . 
P 8 HOH A 41 541 79 HOH HOH . 
P 8 HOH A 42 542 71 HOH HOH . 
P 8 HOH A 43 543 118 HOH HOH . 
P 8 HOH A 44 544 75 HOH HOH . 
P 8 HOH A 45 545 48 HOH HOH . 
P 8 HOH A 46 546 56 HOH HOH . 
P 8 HOH A 47 547 13 HOH HOH . 
P 8 HOH A 48 548 7 HOH HOH . 
P 8 HOH A 49 549 168 HOH HOH . 
P 8 HOH A 50 550 21 HOH HOH . 
P 8 HOH A 51 551 87 HOH HOH . 
P 8 HOH A 52 552 1 HOH HOH . 
P 8 HOH A 53 553 2 HOH HOH . 
P 8 HOH A 54 554 70 HOH HOH . 
P 8 HOH A 55 555 12 HOH HOH . 
P 8 HOH A 56 556 46 HOH HOH . 
P 8 HOH A 57 557 151 HOH HOH . 
P 8 HOH A 58 558 20 HOH HOH . 
P 8 HOH A 59 559 97 HOH HOH . 
P 8 HOH A 60 560 47 HOH HOH . 
P 8 HOH A 61 561 152 HOH HOH . 
P 8 HOH A 62 562 144 HOH HOH . 
P 8 HOH A 63 563 62 HOH HOH . 
P 8 HOH A 64 564 47 HOH HOH . 
P 8 HOH A 65 565 50 HOH HOH . 
P 8 HOH A 66 566 179 HOH HOH . 
P 8 HOH A 67 567 72 HOH HOH . 
P 8 HOH A 68 568 58 HOH HOH . 
P 8 HOH A 69 569 73 HOH HOH . 
P 8 HOH A 70 570 119 HOH HOH . 
P 8 HOH A 71 571 48 HOH HOH . 
P 8 HOH A 72 572 66 HOH HOH . 
P 8 HOH A 73 573 55 HOH HOH . 
P 8 HOH A 74 574 106 HOH HOH . 
P 8 HOH A 75 575 81 HOH HOH . 
P 8 HOH A 76 576 57 HOH HOH . 
P 8 HOH A 77 577 88 HOH HOH . 
P 8 HOH A 78 578 131 HOH HOH . 
P 8 HOH A 79 579 284 HOH HOH . 
P 8 HOH A 80 580 65 HOH HOH . 
P 8 HOH A 81 581 69 HOH HOH . 
P 8 HOH A 82 582 38 HOH HOH . 
P 8 HOH A 83 583 46 HOH HOH . 
P 8 HOH A 84 584 86 HOH HOH . 
Q 8 HOH B 1 501 100 HOH HOH . 
Q 8 HOH B 2 502 109 HOH HOH . 
Q 8 HOH B 3 503 111 HOH HOH . 
Q 8 HOH B 4 504 35 HOH HOH . 
Q 8 HOH B 5 505 129 HOH HOH . 
Q 8 HOH B 6 506 55 HOH HOH . 
Q 8 HOH B 7 507 104 HOH HOH . 
Q 8 HOH B 8 508 128 HOH HOH . 
Q 8 HOH B 9 509 220 HOH HOH . 
Q 8 HOH B 10 510 24 HOH HOH . 
Q 8 HOH B 11 511 112 HOH HOH . 
Q 8 HOH B 12 512 117 HOH HOH . 
Q 8 HOH B 13 513 7 HOH HOH . 
Q 8 HOH B 14 514 281 HOH HOH . 
Q 8 HOH B 15 515 105 HOH HOH . 
Q 8 HOH B 16 516 41 HOH HOH . 
Q 8 HOH B 17 517 127 HOH HOH . 
Q 8 HOH B 18 518 8 HOH HOH . 
Q 8 HOH B 19 519 95 HOH HOH . 
Q 8 HOH B 20 520 56 HOH HOH . 
Q 8 HOH B 21 521 116 HOH HOH . 
Q 8 HOH B 22 522 32 HOH HOH . 
Q 8 HOH B 23 523 99 HOH HOH . 
Q 8 HOH B 24 524 16 HOH HOH . 
Q 8 HOH B 25 525 22 HOH HOH . 
Q 8 HOH B 26 526 69 HOH HOH . 
Q 8 HOH B 27 527 194 HOH HOH . 
Q 8 HOH B 28 528 30 HOH HOH . 
Q 8 HOH B 29 529 279 HOH HOH . 
Q 8 HOH B 30 530 104 HOH HOH . 
Q 8 HOH B 31 531 40 HOH HOH . 
Q 8 HOH B 32 532 107 HOH HOH . 
Q 8 HOH B 33 533 26 HOH HOH . 
Q 8 HOH B 34 534 45 HOH HOH . 
Q 8 HOH B 35 535 9 HOH HOH . 
Q 8 HOH B 36 536 19 HOH HOH . 
Q 8 HOH B 37 537 29 HOH HOH . 
Q 8 HOH B 38 538 25 HOH HOH . 
Q 8 HOH B 39 539 108 HOH HOH . 
Q 8 HOH B 40 540 58 HOH HOH . 
Q 8 HOH B 41 541 21 HOH HOH . 
Q 8 HOH B 42 542 6 HOH HOH . 
Q 8 HOH B 43 543 119 HOH HOH . 
Q 8 HOH B 44 544 61 HOH HOH . 
Q 8 HOH B 45 545 96 HOH HOH . 
Q 8 HOH B 46 546 277 HOH HOH . 
Q 8 HOH B 47 547 27 HOH HOH . 
Q 8 HOH B 48 548 115 HOH HOH . 
Q 8 HOH B 49 549 26 HOH HOH . 
Q 8 HOH B 50 550 66 HOH HOH . 
Q 8 HOH B 51 551 42 HOH HOH . 
Q 8 HOH B 52 552 118 HOH HOH . 
Q 8 HOH B 53 553 8 HOH HOH . 
Q 8 HOH B 54 554 114 HOH HOH . 
Q 8 HOH B 55 555 120 HOH HOH . 
Q 8 HOH B 56 556 11 HOH HOH . 
Q 8 HOH B 57 557 123 HOH HOH . 
Q 8 HOH B 58 558 288 HOH HOH . 
Q 8 HOH B 59 559 94 HOH HOH . 
Q 8 HOH B 60 560 113 HOH HOH . 
Q 8 HOH B 61 561 115 HOH HOH . 
Q 8 HOH B 62 562 89 HOH HOH . 
Q 8 HOH B 63 563 19 HOH HOH . 
Q 8 HOH B 64 564 23 HOH HOH . 
Q 8 HOH B 65 565 14 HOH HOH . 
Q 8 HOH B 66 566 275 HOH HOH . 
Q 8 HOH B 67 567 63 HOH HOH . 
Q 8 HOH B 68 568 80 HOH HOH . 
Q 8 HOH B 69 569 283 HOH HOH . 
Q 8 HOH B 70 570 206 HOH HOH . 
Q 8 HOH B 71 571 158 HOH HOH . 
Q 8 HOH B 72 572 110 HOH HOH . 
Q 8 HOH B 73 573 53 HOH HOH . 
Q 8 HOH B 74 574 39 HOH HOH . 
Q 8 HOH B 75 575 122 HOH HOH . 
Q 8 HOH B 76 576 90 HOH HOH . 
Q 8 HOH B 77 577 98 HOH HOH . 
Q 8 HOH B 78 578 132 HOH HOH . 
Q 8 HOH B 79 579 175 HOH HOH . 
Q 8 HOH B 80 580 90 HOH HOH . 
Q 8 HOH B 81 581 125 HOH HOH . 
Q 8 HOH B 82 582 101 HOH HOH . 
Q 8 HOH B 83 583 28 HOH HOH . 
Q 8 HOH B 84 584 271 HOH HOH . 
Q 8 HOH B 85 585 102 HOH HOH . 
Q 8 HOH B 86 586 112 HOH HOH . 
Q 8 HOH B 87 587 43 HOH HOH . 
Q 8 HOH B 88 588 278 HOH HOH . 
Q 8 HOH B 89 589 282 HOH HOH . 
Q 8 HOH B 90 590 97 HOH HOH . 
Q 8 HOH B 91 591 103 HOH HOH . 
Q 8 HOH B 92 592 280 HOH HOH . 
Q 8 HOH B 93 593 282 HOH HOH . 
Q 8 HOH B 94 594 44 HOH HOH . 
Q 8 HOH B 95 595 93 HOH HOH . 
Q 8 HOH B 96 596 121 HOH HOH . 
Q 8 HOH B 97 597 92 HOH HOH . 
Q 8 HOH B 98 598 273 HOH HOH . 
Q 8 HOH B 99 599 126 HOH HOH . 
Q 8 HOH B 100 600 89 HOH HOH . 
Q 8 HOH B 101 601 51 HOH HOH . 
Q 8 HOH B 102 602 91 HOH HOH . 
R 8 HOH N 1 501 82 HOH HOH . 
R 8 HOH N 2 502 124 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 5 13.219 1.587 -28.031 1 54.13 ? C1 GOL 403 A 1 
HETATM 2 O O1 GOL . . . F 5 13.7 1.393 -26.694 1 57.28 ? O1 GOL 403 A 1 
HETATM 3 C C2 GOL . . . F 5 14.328 2.335 -28.802 1 56.5 ? C2 GOL 403 A 1 
HETATM 4 O O2 GOL . . . F 5 15.163 3.03 -27.93 1 62.56 ? O2 GOL 403 A 1 
HETATM 5 C C3 GOL . . . F 5 15.095 1.247 -29.562 1 60.16 ? C3 GOL 403 A 1 
HETATM 6 O O3 GOL . . . F 5 15.274 1.718 -30.856 1 66.31 ? O3 GOL 403 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           6 
#