data_6HK3 # _model_server_result.job_id Qhm2W39U6nN-nVuSE6x2tQ _model_server_result.datetime_utc '2024-11-19 13:31:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hk3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":407}' # _entry.id 6HK3 # _exptl.entry_id 6HK3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 79.84 _cell.angle_beta 76.21 _cell.angle_gamma 89.63 _cell.entry_id 6HK3 _cell.length_a 64.318 _cell.length_b 67.117 _cell.length_c 67.238 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HK3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,P 1 1 B,K,L,M,N,O,Q 2 1 C,R 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 64.318 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 181 A SER 215 1_555 A N PTR 182 A PTR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C PTR 182 A PTR 216 1_555 A N ILE 183 A ILE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 B C SER 181 B SER 215 1_555 B N PTR 182 B PTR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 B C PTR 182 B PTR 216 1_555 B N ILE 183 B ILE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 6HK3 _atom_sites.fract_transf_matrix[1][1] 0.015548 _atom_sites.fract_transf_matrix[1][2] -0.0001 _atom_sites.fract_transf_matrix[1][3] -0.003861 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0149 _atom_sites.fract_transf_matrix[2][3] -0.002727 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 G8B A 1 401 1 G8B C44 . E 4 MLI A 1 402 2 MLI MLI . F 5 GOL A 1 403 1 GOL GOL . G 5 GOL A 1 404 3 GOL GOL . H 5 GOL A 1 405 4 GOL GOL . I 6 CL A 1 406 1 CL CL . J 7 DMS A 1 407 1 DMS DMS . K 3 G8B B 1 401 2 G8B C44 . L 4 MLI B 1 402 1 MLI MLI . M 5 GOL B 1 403 2 GOL GOL . N 6 CL B 1 404 2 CL CL . O 7 DMS B 1 405 2 DMS DMS . P 8 HOH A 1 501 78 HOH HOH . P 8 HOH A 2 502 77 HOH HOH . P 8 HOH A 3 503 74 HOH HOH . P 8 HOH A 4 504 52 HOH HOH . P 8 HOH A 5 505 36 HOH HOH . P 8 HOH A 6 506 61 HOH HOH . P 8 HOH A 7 507 255 HOH HOH . P 8 HOH A 8 508 80 HOH HOH . P 8 HOH A 9 509 68 HOH HOH . P 8 HOH A 10 510 76 HOH HOH . P 8 HOH A 11 511 67 HOH HOH . P 8 HOH A 12 512 60 HOH HOH . P 8 HOH A 13 513 52 HOH HOH . P 8 HOH A 14 514 5 HOH HOH . P 8 HOH A 15 515 81 HOH HOH . P 8 HOH A 16 516 19 HOH HOH . P 8 HOH A 17 517 123 HOH HOH . P 8 HOH A 18 518 10 HOH HOH . P 8 HOH A 19 519 56 HOH HOH . P 8 HOH A 20 520 16 HOH HOH . P 8 HOH A 21 521 3 HOH HOH . P 8 HOH A 22 522 63 HOH HOH . P 8 HOH A 23 523 33 HOH HOH . P 8 HOH A 24 524 3 HOH HOH . P 8 HOH A 25 525 34 HOH HOH . P 8 HOH A 26 526 87 HOH HOH . P 8 HOH A 27 527 71 HOH HOH . P 8 HOH A 28 528 185 HOH HOH . P 8 HOH A 29 529 18 HOH HOH . P 8 HOH A 30 530 79 HOH HOH . P 8 HOH A 31 531 49 HOH HOH . P 8 HOH A 32 532 59 HOH HOH . P 8 HOH A 33 533 37 HOH HOH . P 8 HOH A 34 534 10 HOH HOH . P 8 HOH A 35 535 57 HOH HOH . P 8 HOH A 36 536 37 HOH HOH . P 8 HOH A 37 537 2 HOH HOH . P 8 HOH A 38 538 35 HOH HOH . P 8 HOH A 39 539 115 HOH HOH . P 8 HOH A 40 540 20 HOH HOH . P 8 HOH A 41 541 79 HOH HOH . P 8 HOH A 42 542 71 HOH HOH . P 8 HOH A 43 543 118 HOH HOH . P 8 HOH A 44 544 75 HOH HOH . P 8 HOH A 45 545 48 HOH HOH . P 8 HOH A 46 546 56 HOH HOH . P 8 HOH A 47 547 13 HOH HOH . P 8 HOH A 48 548 7 HOH HOH . P 8 HOH A 49 549 168 HOH HOH . P 8 HOH A 50 550 21 HOH HOH . P 8 HOH A 51 551 87 HOH HOH . P 8 HOH A 52 552 1 HOH HOH . P 8 HOH A 53 553 2 HOH HOH . P 8 HOH A 54 554 70 HOH HOH . P 8 HOH A 55 555 12 HOH HOH . P 8 HOH A 56 556 46 HOH HOH . P 8 HOH A 57 557 151 HOH HOH . P 8 HOH A 58 558 20 HOH HOH . P 8 HOH A 59 559 97 HOH HOH . P 8 HOH A 60 560 47 HOH HOH . P 8 HOH A 61 561 152 HOH HOH . P 8 HOH A 62 562 144 HOH HOH . P 8 HOH A 63 563 62 HOH HOH . P 8 HOH A 64 564 47 HOH HOH . P 8 HOH A 65 565 50 HOH HOH . P 8 HOH A 66 566 179 HOH HOH . P 8 HOH A 67 567 72 HOH HOH . P 8 HOH A 68 568 58 HOH HOH . P 8 HOH A 69 569 73 HOH HOH . P 8 HOH A 70 570 119 HOH HOH . P 8 HOH A 71 571 48 HOH HOH . P 8 HOH A 72 572 66 HOH HOH . P 8 HOH A 73 573 55 HOH HOH . P 8 HOH A 74 574 106 HOH HOH . P 8 HOH A 75 575 81 HOH HOH . P 8 HOH A 76 576 57 HOH HOH . P 8 HOH A 77 577 88 HOH HOH . P 8 HOH A 78 578 131 HOH HOH . P 8 HOH A 79 579 284 HOH HOH . P 8 HOH A 80 580 65 HOH HOH . P 8 HOH A 81 581 69 HOH HOH . P 8 HOH A 82 582 38 HOH HOH . P 8 HOH A 83 583 46 HOH HOH . P 8 HOH A 84 584 86 HOH HOH . Q 8 HOH B 1 501 100 HOH HOH . Q 8 HOH B 2 502 109 HOH HOH . Q 8 HOH B 3 503 111 HOH HOH . Q 8 HOH B 4 504 35 HOH HOH . Q 8 HOH B 5 505 129 HOH HOH . Q 8 HOH B 6 506 55 HOH HOH . Q 8 HOH B 7 507 104 HOH HOH . Q 8 HOH B 8 508 128 HOH HOH . Q 8 HOH B 9 509 220 HOH HOH . Q 8 HOH B 10 510 24 HOH HOH . Q 8 HOH B 11 511 112 HOH HOH . Q 8 HOH B 12 512 117 HOH HOH . Q 8 HOH B 13 513 7 HOH HOH . Q 8 HOH B 14 514 281 HOH HOH . Q 8 HOH B 15 515 105 HOH HOH . Q 8 HOH B 16 516 41 HOH HOH . Q 8 HOH B 17 517 127 HOH HOH . Q 8 HOH B 18 518 8 HOH HOH . Q 8 HOH B 19 519 95 HOH HOH . Q 8 HOH B 20 520 56 HOH HOH . Q 8 HOH B 21 521 116 HOH HOH . Q 8 HOH B 22 522 32 HOH HOH . Q 8 HOH B 23 523 99 HOH HOH . Q 8 HOH B 24 524 16 HOH HOH . Q 8 HOH B 25 525 22 HOH HOH . Q 8 HOH B 26 526 69 HOH HOH . Q 8 HOH B 27 527 194 HOH HOH . Q 8 HOH B 28 528 30 HOH HOH . Q 8 HOH B 29 529 279 HOH HOH . Q 8 HOH B 30 530 104 HOH HOH . Q 8 HOH B 31 531 40 HOH HOH . Q 8 HOH B 32 532 107 HOH HOH . Q 8 HOH B 33 533 26 HOH HOH . Q 8 HOH B 34 534 45 HOH HOH . Q 8 HOH B 35 535 9 HOH HOH . Q 8 HOH B 36 536 19 HOH HOH . Q 8 HOH B 37 537 29 HOH HOH . Q 8 HOH B 38 538 25 HOH HOH . Q 8 HOH B 39 539 108 HOH HOH . Q 8 HOH B 40 540 58 HOH HOH . Q 8 HOH B 41 541 21 HOH HOH . Q 8 HOH B 42 542 6 HOH HOH . Q 8 HOH B 43 543 119 HOH HOH . Q 8 HOH B 44 544 61 HOH HOH . Q 8 HOH B 45 545 96 HOH HOH . Q 8 HOH B 46 546 277 HOH HOH . Q 8 HOH B 47 547 27 HOH HOH . Q 8 HOH B 48 548 115 HOH HOH . Q 8 HOH B 49 549 26 HOH HOH . Q 8 HOH B 50 550 66 HOH HOH . Q 8 HOH B 51 551 42 HOH HOH . Q 8 HOH B 52 552 118 HOH HOH . Q 8 HOH B 53 553 8 HOH HOH . Q 8 HOH B 54 554 114 HOH HOH . Q 8 HOH B 55 555 120 HOH HOH . Q 8 HOH B 56 556 11 HOH HOH . Q 8 HOH B 57 557 123 HOH HOH . Q 8 HOH B 58 558 288 HOH HOH . Q 8 HOH B 59 559 94 HOH HOH . Q 8 HOH B 60 560 113 HOH HOH . Q 8 HOH B 61 561 115 HOH HOH . Q 8 HOH B 62 562 89 HOH HOH . Q 8 HOH B 63 563 19 HOH HOH . Q 8 HOH B 64 564 23 HOH HOH . Q 8 HOH B 65 565 14 HOH HOH . Q 8 HOH B 66 566 275 HOH HOH . Q 8 HOH B 67 567 63 HOH HOH . Q 8 HOH B 68 568 80 HOH HOH . Q 8 HOH B 69 569 283 HOH HOH . Q 8 HOH B 70 570 206 HOH HOH . Q 8 HOH B 71 571 158 HOH HOH . Q 8 HOH B 72 572 110 HOH HOH . Q 8 HOH B 73 573 53 HOH HOH . Q 8 HOH B 74 574 39 HOH HOH . Q 8 HOH B 75 575 122 HOH HOH . Q 8 HOH B 76 576 90 HOH HOH . Q 8 HOH B 77 577 98 HOH HOH . Q 8 HOH B 78 578 132 HOH HOH . Q 8 HOH B 79 579 175 HOH HOH . Q 8 HOH B 80 580 90 HOH HOH . Q 8 HOH B 81 581 125 HOH HOH . Q 8 HOH B 82 582 101 HOH HOH . Q 8 HOH B 83 583 28 HOH HOH . Q 8 HOH B 84 584 271 HOH HOH . Q 8 HOH B 85 585 102 HOH HOH . Q 8 HOH B 86 586 112 HOH HOH . Q 8 HOH B 87 587 43 HOH HOH . Q 8 HOH B 88 588 278 HOH HOH . Q 8 HOH B 89 589 282 HOH HOH . Q 8 HOH B 90 590 97 HOH HOH . Q 8 HOH B 91 591 103 HOH HOH . Q 8 HOH B 92 592 280 HOH HOH . Q 8 HOH B 93 593 282 HOH HOH . Q 8 HOH B 94 594 44 HOH HOH . Q 8 HOH B 95 595 93 HOH HOH . Q 8 HOH B 96 596 121 HOH HOH . Q 8 HOH B 97 597 92 HOH HOH . Q 8 HOH B 98 598 273 HOH HOH . Q 8 HOH B 99 599 126 HOH HOH . Q 8 HOH B 100 600 89 HOH HOH . Q 8 HOH B 101 601 51 HOH HOH . Q 8 HOH B 102 602 91 HOH HOH . R 8 HOH N 1 501 82 HOH HOH . R 8 HOH N 2 502 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . J 7 -6.681 16.889 -45.741 1 73.36 ? S DMS 407 A 1 HETATM 2 O O DMS . . . J 7 -7.877 17.633 -45.233 1 64.46 ? O DMS 407 A 1 HETATM 3 C C1 DMS . . . J 7 -5.227 17.979 -45.657 1 58.7 ? C1 DMS 407 A 1 HETATM 4 C C2 DMS . . . J 7 -6.188 15.588 -44.576 1 68.57 ? C2 DMS 407 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 4 #