data_6HK4
#
_model_server_result.job_id            F0mUHoqpaHyAJjULsKPpwA 
_model_server_result.datetime_utc      '2024-11-25 08:20:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hk4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    6HK4 
#
_exptl.entry_id    6HK4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              102.046 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         100.5 
_cell.angle_beta          103.7 
_cell.angle_gamma         90.67 
_cell.entry_id            6HK4 
_cell.length_a            63.19 
_cell.length_b            67.205 
_cell.length_c            67.321 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HK4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,J,K,U 1 1 
B,L,M,N,O,P,Q,R,S,T,V 2 1 
C,W 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -63.19 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 181 A SER 215 1_555 A N PTR 182 A PTR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 A C PTR 182 A PTR 216 1_555 A N ILE 183 A ILE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 B C SER 181 B SER 215 1_555 B N PTR 182 B PTR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 B C PTR 182 B PTR 216 1_555 B N ILE 183 B ILE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C3 H2 O4 -2' 
_chem_comp.formula_weight    102.046 
_chem_comp.id                MLI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MLI sing 313 n n 
C1 C3 MLI sing 314 n n 
C1 H11 MLI sing 315 n n 
C1 H12 MLI sing 316 n n 
C2 O6 MLI doub 317 n n 
C2 O7 MLI sing 318 n n 
C3 O8 MLI doub 319 n n 
C3 O9 MLI sing 320 n n 
#
_atom_sites.entry_id                     6HK4 
_atom_sites.fract_transf_matrix[1][1]    0.015825 
_atom_sites.fract_transf_matrix[1][2]    0.000186 
_atom_sites.fract_transf_matrix[1][3]    0.003967 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014881 
_atom_sites.fract_transf_matrix[2][3]    0.002887 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015574 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 MLI A 1 401 2 MLI MLI . 
E 4 GOL A 1 402 1 GOL GOL . 
F 4 GOL A 1 403 3 GOL GOL . 
G 4 GOL A 1 404 7 GOL GOL . 
H 5 DMS A 1 405 1 DMS DMS . 
I 5 DMS A 1 406 3 DMS DMS . 
J 5 DMS A 1 407 4 DMS DMS . 
K 6 G8E A 1 408 1 G8E C22 . 
L 3 MLI B 1 401 1 MLI MLI . 
M 4 GOL B 1 402 2 GOL GOL . 
N 4 GOL B 1 403 5 GOL GOL . 
O 4 GOL B 1 404 6 GOL GOL . 
P 4 GOL B 1 405 8 GOL GOL . 
Q 5 DMS B 1 406 2 DMS DMS . 
R 5 DMS B 1 407 5 DMS DMS . 
S 5 DMS B 1 408 6 DMS DMS . 
T 6 G8E B 1 409 2 G8E C22 . 
U 7 HOH A 1 501 78 HOH HOH . 
U 7 HOH A 2 502 80 HOH HOH . 
U 7 HOH A 3 503 275 HOH HOH . 
U 7 HOH A 4 504 168 HOH HOH . 
U 7 HOH A 5 505 305 HOH HOH . 
U 7 HOH A 6 506 162 HOH HOH . 
U 7 HOH A 7 507 123 HOH HOH . 
U 7 HOH A 8 508 134 HOH HOH . 
U 7 HOH A 9 509 174 HOH HOH . 
U 7 HOH A 10 510 59 HOH HOH . 
U 7 HOH A 11 511 271 HOH HOH . 
U 7 HOH A 12 512 144 HOH HOH . 
U 7 HOH A 13 513 38 HOH HOH . 
U 7 HOH A 14 514 75 HOH HOH . 
U 7 HOH A 15 515 52 HOH HOH . 
U 7 HOH A 16 516 149 HOH HOH . 
U 7 HOH A 17 517 297 HOH HOH . 
U 7 HOH A 18 518 278 HOH HOH . 
U 7 HOH A 19 519 10 HOH HOH . 
U 7 HOH A 20 520 56 HOH HOH . 
U 7 HOH A 21 521 13 HOH HOH . 
U 7 HOH A 22 522 57 HOH HOH . 
U 7 HOH A 23 523 16 HOH HOH . 
U 7 HOH A 24 524 130 HOH HOH . 
U 7 HOH A 25 525 33 HOH HOH . 
U 7 HOH A 26 526 138 HOH HOH . 
U 7 HOH A 27 527 19 HOH HOH . 
U 7 HOH A 28 528 79 HOH HOH . 
U 7 HOH A 29 529 10 HOH HOH . 
U 7 HOH A 30 530 20 HOH HOH . 
U 7 HOH A 31 531 71 HOH HOH . 
U 7 HOH A 32 532 175 HOH HOH . 
U 7 HOH A 33 533 307 HOH HOH . 
U 7 HOH A 34 534 70 HOH HOH . 
U 7 HOH A 35 535 151 HOH HOH . 
U 7 HOH A 36 536 36 HOH HOH . 
U 7 HOH A 37 537 169 HOH HOH . 
U 7 HOH A 38 538 255 HOH HOH . 
U 7 HOH A 39 539 52 HOH HOH . 
U 7 HOH A 40 540 20 HOH HOH . 
U 7 HOH A 41 541 3 HOH HOH . 
U 7 HOH A 42 542 74 HOH HOH . 
U 7 HOH A 43 543 62 HOH HOH . 
U 7 HOH A 44 544 12 HOH HOH . 
U 7 HOH A 45 545 284 HOH HOH . 
U 7 HOH A 46 546 97 HOH HOH . 
U 7 HOH A 47 547 7 HOH HOH . 
U 7 HOH A 48 548 88 HOH HOH . 
U 7 HOH A 49 549 46 HOH HOH . 
U 7 HOH A 50 550 156 HOH HOH . 
U 7 HOH A 51 551 302 HOH HOH . 
U 7 HOH A 52 552 35 HOH HOH . 
U 7 HOH A 53 553 274 HOH HOH . 
U 7 HOH A 54 554 276 HOH HOH . 
U 7 HOH A 55 555 67 HOH HOH . 
U 7 HOH A 56 556 136 HOH HOH . 
U 7 HOH A 57 557 119 HOH HOH . 
U 7 HOH A 58 558 73 HOH HOH . 
U 7 HOH A 59 559 76 HOH HOH . 
U 7 HOH A 60 560 71 HOH HOH . 
U 7 HOH A 61 561 87 HOH HOH . 
U 7 HOH A 62 562 50 HOH HOH . 
U 7 HOH A 63 563 2 HOH HOH . 
U 7 HOH A 64 564 118 HOH HOH . 
U 7 HOH A 65 565 49 HOH HOH . 
U 7 HOH A 66 566 37 HOH HOH . 
U 7 HOH A 67 567 163 HOH HOH . 
U 7 HOH A 68 568 131 HOH HOH . 
U 7 HOH A 69 569 66 HOH HOH . 
U 7 HOH A 70 570 72 HOH HOH . 
U 7 HOH A 71 571 47 HOH HOH . 
U 7 HOH A 72 572 46 HOH HOH . 
U 7 HOH A 73 573 176 HOH HOH . 
U 7 HOH A 74 574 317 HOH HOH . 
U 7 HOH A 75 575 58 HOH HOH . 
U 7 HOH A 76 576 319 HOH HOH . 
U 7 HOH A 77 577 85 HOH HOH . 
U 7 HOH A 78 578 5 HOH HOH . 
U 7 HOH A 79 579 87 HOH HOH . 
U 7 HOH A 80 580 289 HOH HOH . 
U 7 HOH A 81 581 69 HOH HOH . 
U 7 HOH A 82 582 153 HOH HOH . 
U 7 HOH A 83 583 291 HOH HOH . 
U 7 HOH A 84 584 152 HOH HOH . 
U 7 HOH A 85 585 135 HOH HOH . 
U 7 HOH A 86 586 55 HOH HOH . 
U 7 HOH A 87 587 57 HOH HOH . 
U 7 HOH A 88 588 56 HOH HOH . 
U 7 HOH A 89 589 301 HOH HOH . 
U 7 HOH A 90 590 157 HOH HOH . 
U 7 HOH A 91 591 144 HOH HOH . 
U 7 HOH A 92 592 139 HOH HOH . 
U 7 HOH A 93 593 48 HOH HOH . 
U 7 HOH A 94 594 282 HOH HOH . 
U 7 HOH A 95 595 284 HOH HOH . 
U 7 HOH A 96 596 318 HOH HOH . 
U 7 HOH A 97 597 171 HOH HOH . 
U 7 HOH A 98 598 86 HOH HOH . 
U 7 HOH A 99 599 292 HOH HOH . 
U 7 HOH A 100 600 168 HOH HOH . 
U 7 HOH A 101 601 314 HOH HOH . 
U 7 HOH A 102 602 170 HOH HOH . 
U 7 HOH A 103 603 299 HOH HOH . 
U 7 HOH A 104 604 140 HOH HOH . 
U 7 HOH A 105 605 154 HOH HOH . 
U 7 HOH A 106 606 293 HOH HOH . 
U 7 HOH A 107 607 179 HOH HOH . 
U 7 HOH A 108 608 158 HOH HOH . 
U 7 HOH A 109 609 303 HOH HOH . 
V 7 HOH B 1 501 173 HOH HOH . 
V 7 HOH B 2 502 309 HOH HOH . 
V 7 HOH B 3 503 120 HOH HOH . 
V 7 HOH B 4 504 290 HOH HOH . 
V 7 HOH B 5 505 104 HOH HOH . 
V 7 HOH B 6 506 102 HOH HOH . 
V 7 HOH B 7 507 128 HOH HOH . 
V 7 HOH B 8 508 304 HOH HOH . 
V 7 HOH B 9 509 306 HOH HOH . 
V 7 HOH B 10 510 145 HOH HOH . 
V 7 HOH B 11 511 25 HOH HOH . 
V 7 HOH B 12 512 35 HOH HOH . 
V 7 HOH B 13 513 108 HOH HOH . 
V 7 HOH B 14 514 32 HOH HOH . 
V 7 HOH B 15 515 316 HOH HOH . 
V 7 HOH B 16 516 94 HOH HOH . 
V 7 HOH B 17 517 286 HOH HOH . 
V 7 HOH B 18 518 30 HOH HOH . 
V 7 HOH B 19 519 7 HOH HOH . 
V 7 HOH B 20 520 280 HOH HOH . 
V 7 HOH B 21 521 40 HOH HOH . 
V 7 HOH B 22 522 295 HOH HOH . 
V 7 HOH B 23 523 24 HOH HOH . 
V 7 HOH B 24 524 26 HOH HOH . 
V 7 HOH B 25 525 115 HOH HOH . 
V 7 HOH B 26 526 315 HOH HOH . 
V 7 HOH B 27 527 41 HOH HOH . 
V 7 HOH B 28 528 107 HOH HOH . 
V 7 HOH B 29 529 129 HOH HOH . 
V 7 HOH B 30 530 277 HOH HOH . 
V 7 HOH B 31 531 160 HOH HOH . 
V 7 HOH B 32 532 16 HOH HOH . 
V 7 HOH B 33 533 112 HOH HOH . 
V 7 HOH B 34 534 98 HOH HOH . 
V 7 HOH B 35 535 9 HOH HOH . 
V 7 HOH B 36 536 55 HOH HOH . 
V 7 HOH B 37 537 69 HOH HOH . 
V 7 HOH B 38 538 167 HOH HOH . 
V 7 HOH B 39 539 26 HOH HOH . 
V 7 HOH B 40 540 90 HOH HOH . 
V 7 HOH B 41 541 104 HOH HOH . 
V 7 HOH B 42 542 27 HOH HOH . 
V 7 HOH B 43 543 142 HOH HOH . 
V 7 HOH B 44 544 143 HOH HOH . 
V 7 HOH B 45 545 66 HOH HOH . 
V 7 HOH B 46 546 116 HOH HOH . 
V 7 HOH B 47 547 8 HOH HOH . 
V 7 HOH B 48 548 281 HOH HOH . 
V 7 HOH B 49 549 45 HOH HOH . 
V 7 HOH B 50 550 21 HOH HOH . 
V 7 HOH B 51 551 313 HOH HOH . 
V 7 HOH B 52 552 14 HOH HOH . 
V 7 HOH B 53 553 119 HOH HOH . 
V 7 HOH B 54 554 19 HOH HOH . 
V 7 HOH B 55 555 56 HOH HOH . 
V 7 HOH B 56 556 99 HOH HOH . 
V 7 HOH B 57 557 148 HOH HOH . 
V 7 HOH B 58 558 11 HOH HOH . 
V 7 HOH B 59 559 298 HOH HOH . 
V 7 HOH B 60 560 308 HOH HOH . 
V 7 HOH B 61 561 115 HOH HOH . 
V 7 HOH B 62 562 279 HOH HOH . 
V 7 HOH B 63 563 53 HOH HOH . 
V 7 HOH B 64 564 110 HOH HOH . 
V 7 HOH B 65 565 90 HOH HOH . 
V 7 HOH B 66 566 159 HOH HOH . 
V 7 HOH B 67 567 310 HOH HOH . 
V 7 HOH B 68 568 311 HOH HOH . 
V 7 HOH B 69 569 220 HOH HOH . 
V 7 HOH B 70 570 114 HOH HOH . 
V 7 HOH B 71 571 42 HOH HOH . 
V 7 HOH B 72 572 146 HOH HOH . 
V 7 HOH B 73 573 164 HOH HOH . 
V 7 HOH B 74 574 194 HOH HOH . 
V 7 HOH B 75 575 93 HOH HOH . 
V 7 HOH B 76 576 165 HOH HOH . 
V 7 HOH B 77 577 96 HOH HOH . 
V 7 HOH B 78 578 133 HOH HOH . 
V 7 HOH B 79 579 22 HOH HOH . 
V 7 HOH B 80 580 39 HOH HOH . 
V 7 HOH B 81 581 125 HOH HOH . 
V 7 HOH B 82 582 282 HOH HOH . 
V 7 HOH B 83 583 161 HOH HOH . 
V 7 HOH B 84 584 206 HOH HOH . 
V 7 HOH B 85 585 28 HOH HOH . 
V 7 HOH B 86 586 111 HOH HOH . 
V 7 HOH B 87 587 155 HOH HOH . 
V 7 HOH B 88 588 147 HOH HOH . 
V 7 HOH B 89 589 61 HOH HOH . 
V 7 HOH B 90 590 141 HOH HOH . 
V 7 HOH B 91 591 89 HOH HOH . 
V 7 HOH B 92 592 294 HOH HOH . 
V 7 HOH B 93 593 158 HOH HOH . 
V 7 HOH B 94 594 113 HOH HOH . 
V 7 HOH B 95 595 44 HOH HOH . 
V 7 HOH B 96 596 175 HOH HOH . 
V 7 HOH B 97 597 97 HOH HOH . 
V 7 HOH B 98 598 89 HOH HOH . 
V 7 HOH B 99 599 117 HOH HOH . 
V 7 HOH B 100 600 103 HOH HOH . 
V 7 HOH B 101 601 121 HOH HOH . 
V 7 HOH B 102 602 288 HOH HOH . 
V 7 HOH B 103 603 177 HOH HOH . 
V 7 HOH B 104 604 172 HOH HOH . 
V 7 HOH B 105 605 92 HOH HOH . 
V 7 HOH B 106 606 300 HOH HOH . 
V 7 HOH B 107 607 273 HOH HOH . 
V 7 HOH B 108 608 312 HOH HOH . 
V 7 HOH B 109 609 166 HOH HOH . 
V 7 HOH B 110 610 91 HOH HOH . 
V 7 HOH B 111 611 126 HOH HOH . 
V 7 HOH B 112 612 288 HOH HOH . 
V 7 HOH B 113 613 285 HOH HOH . 
W 7 HOH N 1 501 82 HOH HOH . 
W 7 HOH N 2 502 150 HOH HOH . 
W 7 HOH N 3 503 84 HOH HOH . 
W 7 HOH N 4 504 124 HOH HOH . 
W 7 HOH N 5 505 71 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLI . . . D 3 -5.655 1.077 18.426 1 52.95 ? C1 MLI 401 A 1 
HETATM 2 C C2 MLI . . . D 3 -5.246 1.051 16.946 1 61.47 ? C2 MLI 401 A 1 
HETATM 3 C C3 MLI . . . D 3 -6.174 2.478 18.747 1 57.17 ? C3 MLI 401 A 1 
HETATM 4 O O6 MLI . . . D 3 -6.111 1.05 16.037 1 47.76 ? O6 MLI 401 A 1 
HETATM 5 O O7 MLI . . . D 3 -4.034 1.029 16.621 1 52.65 ? O7 MLI 401 A 1 
HETATM 6 O O8 MLI . . . D 3 -5.503 3.491 18.42 1 53.61 ? O8 MLI 401 A 1 
HETATM 7 O O9 MLI . . . D 3 -7.288 2.627 19.305 1 63.36 ? O9 MLI 401 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           7 
#