data_6HK8
#
_model_server_result.job_id            uKbmoZZlU8wJwUfJ7bAWKw 
_model_server_result.datetime_utc      '2025-09-01 07:33:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hk8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":203}' 
#
_entry.id    6HK8 
#
_exptl.entry_id    6HK8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.105 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIETHYLENE DIOXIDE' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6HK8 
_cell.length_a            47.97 
_cell.length_b            47.97 
_cell.length_c            210.98 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HK8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I 1 1,2 
A,B,C,D,E,F,G,H,I 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 210.98 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
#
_chem_comp.formula           'C4 H8 O2' 
_chem_comp.formula_weight    88.105 
_chem_comp.id                DIO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIETHYLENE DIOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C1' DIO sing 70 n n 
C1 O1 DIO sing 71 n n 
C1 H11 DIO sing 72 n n 
C1 H12 DIO sing 73 n n 
C2 C2' DIO sing 74 n n 
C2 O1 DIO sing 75 n n 
C2 H21 DIO sing 76 n n 
C2 H22 DIO sing 77 n n 
C1' O1' DIO sing 78 n n 
C1' "H1'1" DIO sing 79 n n 
C1' "H1'2" DIO sing 80 n n 
C2' O1' DIO sing 81 n n 
C2' "H2'1" DIO sing 82 n n 
C2' "H2'2" DIO sing 83 n n 
#
_atom_sites.entry_id                     6HK8 
_atom_sites.fract_transf_matrix[1][1]    0.020846 
_atom_sites.fract_transf_matrix[1][2]    0.012036 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024071 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00474 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DIO A 1 201 1 DIO DIO . 
D 2 DIO A 1 202 2 DIO DIO . 
E 2 DIO A 1 203 3 DIO DIO . 
F 2 DIO A 1 204 4 DIO DIO . 
G 2 DIO A 1 205 5 DIO DIO . 
H 3 HOH A 1 301 2 HOH HOH . 
H 3 HOH A 2 302 25 HOH HOH . 
H 3 HOH A 3 303 5 HOH HOH . 
H 3 HOH A 4 304 20 HOH HOH . 
H 3 HOH A 5 305 43 HOH HOH . 
H 3 HOH A 6 306 11 HOH HOH . 
H 3 HOH A 7 307 9 HOH HOH . 
H 3 HOH A 8 308 41 HOH HOH . 
H 3 HOH A 9 309 6 HOH HOH . 
H 3 HOH A 10 310 26 HOH HOH . 
H 3 HOH A 11 311 37 HOH HOH . 
H 3 HOH A 12 312 21 HOH HOH . 
H 3 HOH A 13 313 44 HOH HOH . 
H 3 HOH A 14 314 49 HOH HOH . 
H 3 HOH A 15 315 27 HOH HOH . 
H 3 HOH A 16 316 40 HOH HOH . 
H 3 HOH A 17 317 22 HOH HOH . 
H 3 HOH A 18 318 45 HOH HOH . 
H 3 HOH A 19 319 35 HOH HOH . 
H 3 HOH A 20 320 15 HOH HOH . 
H 3 HOH A 21 321 14 HOH HOH . 
H 3 HOH A 22 322 12 HOH HOH . 
H 3 HOH A 23 323 33 HOH HOH . 
H 3 HOH A 24 324 29 HOH HOH . 
H 3 HOH A 25 325 51 HOH HOH . 
H 3 HOH A 26 326 19 HOH HOH . 
H 3 HOH A 27 327 46 HOH HOH . 
H 3 HOH A 28 328 47 HOH HOH . 
H 3 HOH A 29 329 24 HOH HOH . 
H 3 HOH A 30 330 50 HOH HOH . 
H 3 HOH A 31 331 36 HOH HOH . 
H 3 HOH A 32 332 59 HOH HOH . 
H 3 HOH A 33 333 54 HOH HOH . 
H 3 HOH A 34 334 16 HOH HOH . 
H 3 HOH A 35 335 10 HOH HOH . 
I 3 HOH B 1 201 39 HOH HOH . 
I 3 HOH B 2 202 17 HOH HOH . 
I 3 HOH B 3 203 13 HOH HOH . 
I 3 HOH B 4 204 3 HOH HOH . 
I 3 HOH B 5 205 1 HOH HOH . 
I 3 HOH B 6 206 18 HOH HOH . 
I 3 HOH B 7 207 4 HOH HOH . 
I 3 HOH B 8 208 56 HOH HOH . 
I 3 HOH B 9 209 31 HOH HOH . 
I 3 HOH B 10 210 34 HOH HOH . 
I 3 HOH B 11 211 7 HOH HOH . 
I 3 HOH B 12 212 53 HOH HOH . 
I 3 HOH B 13 213 55 HOH HOH . 
I 3 HOH B 14 214 60 HOH HOH . 
I 3 HOH B 15 215 30 HOH HOH . 
I 3 HOH B 16 216 8 HOH HOH . 
I 3 HOH B 17 217 57 HOH HOH . 
I 3 HOH B 18 218 32 HOH HOH . 
I 3 HOH B 19 219 42 HOH HOH . 
I 3 HOH B 20 220 28 HOH HOH . 
I 3 HOH B 21 221 38 HOH HOH . 
I 3 HOH B 22 222 52 HOH HOH . 
I 3 HOH B 23 223 23 HOH HOH . 
I 3 HOH B 24 224 48 HOH HOH . 
I 3 HOH B 25 225 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DIO . . . E 2 14.785 26.98 141.29 0.65 54.7 ? C1 DIO 203 A 1 
HETATM 2 C C2 DIO . . . E 2 17.02 27.621 141.418 0.65 48.06 ? C2 DIO 203 A 1 
HETATM 3 C C1' DIO . . . E 2 15.011 25.961 142.406 0.65 68.62 ? C1' DIO 203 A 1 
HETATM 4 C C2' DIO . . . E 2 17.251 26.603 142.533 0.65 63 ? C2' DIO 203 A 1 
HETATM 5 O O1 DIO . . . E 2 15.688 28.048 141.368 0.65 48.8 ? O1 DIO 203 A 1 
HETATM 6 O O1' DIO . . . E 2 16.345 25.537 142.472 0.65 72.24 ? O1' DIO 203 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#