data_6HKE
#
_model_server_result.job_id            bm1-mwqLL3zwgDn-LD2psA 
_model_server_result.datetime_utc      '2025-03-09 02:37:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hke 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":401}' 
#
_entry.id    6HKE 
#
_exptl.entry_id    6HKE 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              134.087 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            D-MALATE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6HKE 
_cell.length_a            80.8 
_cell.length_b            205.75 
_cell.length_c            47.62 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HKE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,J 1 1 
B,F,G,K 2 1 
C,H,I,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 F N N 
? 2 H N N 
#
_chem_comp.formula           'C4 H6 O5' 
_chem_comp.formula_weight    134.087 
_chem_comp.id                MLT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-MALATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(2R)-2-HYDROXYBUTANEDIOIC ACID;2-HYDROXY-SUCCINIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 MLT doub 251 n n 
C1 O2 MLT sing 252 n n 
C1 C2 MLT sing 253 n n 
C2 O3 MLT sing 254 n n 
C2 C3 MLT sing 255 n n 
C2 H2 MLT sing 256 n n 
O3 HO3 MLT sing 257 n n 
C3 C4 MLT sing 258 n n 
C3 H31 MLT sing 259 n n 
C3 H32 MLT sing 260 n n 
C4 O4 MLT doub 261 n n 
C4 O5 MLT sing 262 n n 
O5 HO5 MLT sing 263 n n 
O2 H6 MLT sing 264 n n 
#
_atom_sites.entry_id                     6HKE 
_atom_sites.fract_transf_matrix[1][1]    0.012376 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00486 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 MLT A 1 401 1 MLT MLT . 
E 3 LMR A 1 402 1 LMR LMR . 
F 2 MLT B 1 401 3 MLT MLT . 
G 3 LMR B 1 402 3 LMR LMR . 
H 2 MLT C 1 401 2 MLT MLT . 
I 3 LMR C 1 402 2 LMR LMR . 
J 4 HOH A 1 501 40 HOH HOH . 
J 4 HOH A 2 502 23 HOH HOH . 
J 4 HOH A 3 503 31 HOH HOH . 
J 4 HOH A 4 504 76 HOH HOH . 
J 4 HOH A 5 505 34 HOH HOH . 
J 4 HOH A 6 506 33 HOH HOH . 
J 4 HOH A 7 507 25 HOH HOH . 
J 4 HOH A 8 508 35 HOH HOH . 
J 4 HOH A 9 509 50 HOH HOH . 
J 4 HOH A 10 510 36 HOH HOH . 
J 4 HOH A 11 511 32 HOH HOH . 
J 4 HOH A 12 512 41 HOH HOH . 
J 4 HOH A 13 513 37 HOH HOH . 
J 4 HOH A 14 514 46 HOH HOH . 
J 4 HOH A 15 515 83 HOH HOH . 
J 4 HOH A 16 516 61 HOH HOH . 
J 4 HOH A 17 517 101 HOH HOH . 
J 4 HOH A 18 518 77 HOH HOH . 
J 4 HOH A 19 519 67 HOH HOH . 
J 4 HOH A 20 520 65 HOH HOH . 
J 4 HOH A 21 521 30 HOH HOH . 
J 4 HOH A 22 522 78 HOH HOH . 
J 4 HOH A 23 523 15 HOH HOH . 
J 4 HOH A 24 524 44 HOH HOH . 
J 4 HOH A 25 525 38 HOH HOH . 
J 4 HOH A 26 526 16 HOH HOH . 
J 4 HOH A 27 527 5 HOH HOH . 
J 4 HOH A 28 528 24 HOH HOH . 
J 4 HOH A 29 529 22 HOH HOH . 
J 4 HOH A 30 530 21 HOH HOH . 
J 4 HOH A 31 531 18 HOH HOH . 
J 4 HOH A 32 532 68 HOH HOH . 
J 4 HOH A 33 533 39 HOH HOH . 
J 4 HOH A 34 534 72 HOH HOH . 
J 4 HOH A 35 535 47 HOH HOH . 
J 4 HOH A 36 536 48 HOH HOH . 
J 4 HOH A 37 537 74 HOH HOH . 
J 4 HOH A 38 538 10 HOH HOH . 
J 4 HOH A 39 539 11 HOH HOH . 
J 4 HOH A 40 540 49 HOH HOH . 
J 4 HOH A 41 541 51 HOH HOH . 
J 4 HOH A 42 542 73 HOH HOH . 
J 4 HOH A 43 543 27 HOH HOH . 
J 4 HOH A 44 544 26 HOH HOH . 
J 4 HOH A 45 545 45 HOH HOH . 
J 4 HOH A 46 546 13 HOH HOH . 
J 4 HOH A 47 547 85 HOH HOH . 
J 4 HOH A 48 548 86 HOH HOH . 
J 4 HOH A 49 549 8 HOH HOH . 
J 4 HOH A 50 550 9 HOH HOH . 
J 4 HOH A 51 551 42 HOH HOH . 
K 4 HOH B 1 501 97 HOH HOH . 
K 4 HOH B 2 502 113 HOH HOH . 
K 4 HOH B 3 503 105 HOH HOH . 
K 4 HOH B 4 504 90 HOH HOH . 
K 4 HOH B 5 505 1 HOH HOH . 
K 4 HOH B 6 506 87 HOH HOH . 
K 4 HOH B 7 507 99 HOH HOH . 
K 4 HOH B 8 508 104 HOH HOH . 
K 4 HOH B 9 509 75 HOH HOH . 
K 4 HOH B 10 510 103 HOH HOH . 
K 4 HOH B 11 511 28 HOH HOH . 
K 4 HOH B 12 512 89 HOH HOH . 
K 4 HOH B 13 513 19 HOH HOH . 
K 4 HOH B 14 514 43 HOH HOH . 
K 4 HOH B 15 515 66 HOH HOH . 
K 4 HOH B 16 516 108 HOH HOH . 
K 4 HOH B 17 517 88 HOH HOH . 
K 4 HOH B 18 518 81 HOH HOH . 
K 4 HOH B 19 519 98 HOH HOH . 
K 4 HOH B 20 520 106 HOH HOH . 
K 4 HOH B 21 521 102 HOH HOH . 
K 4 HOH B 22 522 91 HOH HOH . 
K 4 HOH B 23 523 96 HOH HOH . 
K 4 HOH B 24 524 3 HOH HOH . 
K 4 HOH B 25 525 92 HOH HOH . 
K 4 HOH B 26 526 53 HOH HOH . 
K 4 HOH B 27 527 111 HOH HOH . 
K 4 HOH B 28 528 82 HOH HOH . 
K 4 HOH B 29 529 60 HOH HOH . 
L 4 HOH C 1 501 59 HOH HOH . 
L 4 HOH C 2 502 70 HOH HOH . 
L 4 HOH C 3 503 64 HOH HOH . 
L 4 HOH C 4 504 69 HOH HOH . 
L 4 HOH C 5 505 57 HOH HOH . 
L 4 HOH C 6 506 7 HOH HOH . 
L 4 HOH C 7 507 20 HOH HOH . 
L 4 HOH C 8 508 62 HOH HOH . 
L 4 HOH C 9 509 58 HOH HOH . 
L 4 HOH C 10 510 6 HOH HOH . 
L 4 HOH C 11 511 12 HOH HOH . 
L 4 HOH C 12 512 94 HOH HOH . 
L 4 HOH C 13 513 100 HOH HOH . 
L 4 HOH C 14 514 95 HOH HOH . 
L 4 HOH C 15 515 29 HOH HOH . 
L 4 HOH C 16 516 2 HOH HOH . 
L 4 HOH C 17 517 54 HOH HOH . 
L 4 HOH C 18 518 84 HOH HOH . 
L 4 HOH C 19 519 93 HOH HOH . 
L 4 HOH C 20 520 56 HOH HOH . 
L 4 HOH C 21 521 17 HOH HOH . 
L 4 HOH C 22 522 71 HOH HOH . 
L 4 HOH C 23 523 112 HOH HOH . 
L 4 HOH C 24 524 14 HOH HOH . 
L 4 HOH C 25 525 110 HOH HOH . 
L 4 HOH C 26 526 55 HOH HOH . 
L 4 HOH C 27 527 79 HOH HOH . 
L 4 HOH C 28 528 4 HOH HOH . 
L 4 HOH C 29 529 107 HOH HOH . 
L 4 HOH C 30 530 52 HOH HOH . 
L 4 HOH C 31 531 63 HOH HOH . 
L 4 HOH C 32 532 109 HOH HOH . 
L 4 HOH C 33 533 80 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLT . A . H 2 -7.905 -4.467 -4.445 0.5 26.49 ? C1 MLT 401 C 1 
HETATM 2 O O1 MLT . A . H 2 -7.928 -5.23 -5.422 0.5 26.15 ? O1 MLT 401 C 1 
HETATM 3 O O2 MLT . A . H 2 -8.614 -4.705 -3.435 0.5 25.3 ? O2 MLT 401 C 1 
HETATM 4 C C2 MLT . A . H 2 -7.004 -3.246 -4.53 0.5 25.79 ? C2 MLT 401 C 1 
HETATM 5 O O3 MLT . A . H 2 -5.693 -3.487 -5.083 0.5 25.28 ? O3 MLT 401 C 1 
HETATM 6 C C3 MLT . A . H 2 -6.737 -2.709 -3.152 0.5 25.64 ? C3 MLT 401 C 1 
HETATM 7 C C4 MLT . A . H 2 -6.257 -1.289 -3.321 0.5 25.36 ? C4 MLT 401 C 1 
HETATM 8 O O4 MLT . A . H 2 -5.081 -1.029 -3.702 0.5 24.28 ? O4 MLT 401 C 1 
HETATM 9 O O5 MLT . A . H 2 -7.11 -0.419 -3.058 0.5 24.94 ? O5 MLT 401 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           9 
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