data_6HKP
#
_model_server_result.job_id            CnKVadI6Bgi4fy6dh6YGcQ 
_model_server_result.datetime_utc      '2024-11-21 17:17:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hkp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":411}' 
#
_entry.id    6HKP 
#
_exptl.entry_id    6HKP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6HKP 
_cell.length_a            86.02 
_cell.length_b            86.02 
_cell.length_c            148.508 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HKP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_465 y-1,x+1,-z 0 1 0 1 0 0 0 0 -1 -86.02 86.02 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 200 A HIS 199 1_555 O ZN ZN . A ZN 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc2 A OD2 ASP 202 A ASP 201 1_555 O ZN ZN . A ZN 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc3 A NE2 HIS 280 A HIS 279 1_555 O ZN ZN . A ZN 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc4 N O1 OGA . A OGA 412 1_555 O ZN ZN . A ZN 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc5 N O2' OGA . A OGA 412 1_555 O ZN ZN . A ZN 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? 
metalc ? metalc6 O ZN ZN . A ZN 413 1_555 P O HOH . A HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6HKP 
_atom_sites.fract_transf_matrix[1][1]    0.011625 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011625 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006734 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SO4 A 1 401 1 SO4 SO4 . 
D 3 SO4 A 1 402 2 SO4 SO4 . 
E 3 SO4 A 1 403 3 SO4 SO4 . 
F 3 SO4 A 1 404 5 SO4 SO4 . 
G 3 SO4 A 1 405 6 SO4 SO4 . 
H 3 SO4 A 1 406 8 SO4 SO4 . 
I 4 GOL A 1 407 1 GOL GOL . 
J 4 GOL A 1 408 2 GOL GOL . 
K 4 GOL A 1 409 3 GOL GOL . 
L 4 GOL A 1 410 4 GOL GOL . 
M 4 GOL A 1 411 5 GOL GOL . 
N 5 OGA A 1 412 601 OGA OGA . 
O 6 ZN A 1 413 501 ZN ZN . 
P 7 HOH A 1 501 167 HOH HOH . 
P 7 HOH A 2 502 22 HOH HOH . 
P 7 HOH A 3 503 87 HOH HOH . 
P 7 HOH A 4 504 21 HOH HOH . 
P 7 HOH A 5 505 82 HOH HOH . 
P 7 HOH A 6 506 79 HOH HOH . 
P 7 HOH A 7 507 73 HOH HOH . 
P 7 HOH A 8 508 28 HOH HOH . 
P 7 HOH A 9 509 50 HOH HOH . 
P 7 HOH A 10 510 106 HOH HOH . 
P 7 HOH A 11 511 156 HOH HOH . 
P 7 HOH A 12 512 67 HOH HOH . 
P 7 HOH A 13 513 57 HOH HOH . 
P 7 HOH A 14 514 134 HOH HOH . 
P 7 HOH A 15 515 95 HOH HOH . 
P 7 HOH A 16 516 12 HOH HOH . 
P 7 HOH A 17 517 52 HOH HOH . 
P 7 HOH A 18 518 205 HOH HOH . 
P 7 HOH A 19 519 29 HOH HOH . 
P 7 HOH A 20 520 56 HOH HOH . 
P 7 HOH A 21 521 110 HOH HOH . 
P 7 HOH A 22 522 74 HOH HOH . 
P 7 HOH A 23 523 78 HOH HOH . 
P 7 HOH A 24 524 8 HOH HOH . 
P 7 HOH A 25 525 5 HOH HOH . 
P 7 HOH A 26 526 14 HOH HOH . 
P 7 HOH A 27 527 30 HOH HOH . 
P 7 HOH A 28 528 38 HOH HOH . 
P 7 HOH A 29 529 88 HOH HOH . 
P 7 HOH A 30 530 23 HOH HOH . 
P 7 HOH A 31 531 69 HOH HOH . 
P 7 HOH A 32 532 1 HOH HOH . 
P 7 HOH A 33 533 164 HOH HOH . 
P 7 HOH A 34 534 83 HOH HOH . 
P 7 HOH A 35 535 63 HOH HOH . 
P 7 HOH A 36 536 42 HOH HOH . 
P 7 HOH A 37 537 46 HOH HOH . 
P 7 HOH A 38 538 128 HOH HOH . 
P 7 HOH A 39 539 163 HOH HOH . 
P 7 HOH A 40 540 45 HOH HOH . 
P 7 HOH A 41 541 84 HOH HOH . 
P 7 HOH A 42 542 4 HOH HOH . 
P 7 HOH A 43 543 166 HOH HOH . 
P 7 HOH A 44 544 10 HOH HOH . 
P 7 HOH A 45 545 68 HOH HOH . 
P 7 HOH A 46 546 62 HOH HOH . 
P 7 HOH A 47 547 70 HOH HOH . 
P 7 HOH A 48 548 49 HOH HOH . 
P 7 HOH A 49 549 200 HOH HOH . 
P 7 HOH A 50 550 172 HOH HOH . 
P 7 HOH A 51 551 35 HOH HOH . 
P 7 HOH A 52 552 53 HOH HOH . 
P 7 HOH A 53 553 3 HOH HOH . 
P 7 HOH A 54 554 6 HOH HOH . 
P 7 HOH A 55 555 109 HOH HOH . 
P 7 HOH A 56 556 33 HOH HOH . 
P 7 HOH A 57 557 92 HOH HOH . 
P 7 HOH A 58 558 15 HOH HOH . 
P 7 HOH A 59 559 24 HOH HOH . 
P 7 HOH A 60 560 51 HOH HOH . 
P 7 HOH A 61 561 176 HOH HOH . 
P 7 HOH A 62 562 16 HOH HOH . 
P 7 HOH A 63 563 40 HOH HOH . 
P 7 HOH A 64 564 39 HOH HOH . 
P 7 HOH A 65 565 9 HOH HOH . 
P 7 HOH A 66 566 141 HOH HOH . 
P 7 HOH A 67 567 58 HOH HOH . 
P 7 HOH A 68 568 25 HOH HOH . 
P 7 HOH A 69 569 85 HOH HOH . 
P 7 HOH A 70 570 61 HOH HOH . 
P 7 HOH A 71 571 17 HOH HOH . 
P 7 HOH A 72 572 27 HOH HOH . 
P 7 HOH A 73 573 20 HOH HOH . 
P 7 HOH A 74 574 76 HOH HOH . 
P 7 HOH A 75 575 71 HOH HOH . 
P 7 HOH A 76 576 55 HOH HOH . 
P 7 HOH A 77 577 2 HOH HOH . 
P 7 HOH A 78 578 189 HOH HOH . 
P 7 HOH A 79 579 18 HOH HOH . 
P 7 HOH A 80 580 11 HOH HOH . 
P 7 HOH A 81 581 41 HOH HOH . 
P 7 HOH A 82 582 89 HOH HOH . 
P 7 HOH A 83 583 75 HOH HOH . 
P 7 HOH A 84 584 26 HOH HOH . 
P 7 HOH A 85 585 165 HOH HOH . 
P 7 HOH A 86 586 44 HOH HOH . 
P 7 HOH A 87 587 54 HOH HOH . 
P 7 HOH A 88 588 47 HOH HOH . 
P 7 HOH A 89 589 100 HOH HOH . 
P 7 HOH A 90 590 19 HOH HOH . 
P 7 HOH A 91 591 124 HOH HOH . 
P 7 HOH A 92 592 31 HOH HOH . 
P 7 HOH A 93 593 7 HOH HOH . 
P 7 HOH A 94 594 203 HOH HOH . 
P 7 HOH A 95 595 144 HOH HOH . 
P 7 HOH A 96 596 90 HOH HOH . 
P 7 HOH A 97 597 169 HOH HOH . 
P 7 HOH A 98 598 199 HOH HOH . 
P 7 HOH A 99 599 206 HOH HOH . 
P 7 HOH A 100 600 178 HOH HOH . 
P 7 HOH A 101 601 181 HOH HOH . 
P 7 HOH A 102 602 196 HOH HOH . 
P 7 HOH A 103 603 60 HOH HOH . 
P 7 HOH A 104 604 94 HOH HOH . 
P 7 HOH A 105 605 140 HOH HOH . 
P 7 HOH A 106 606 201 HOH HOH . 
P 7 HOH A 107 607 197 HOH HOH . 
P 7 HOH A 108 608 64 HOH HOH . 
P 7 HOH A 109 609 103 HOH HOH . 
P 7 HOH A 110 610 187 HOH HOH . 
P 7 HOH A 111 611 36 HOH HOH . 
P 7 HOH A 112 612 13 HOH HOH . 
P 7 HOH A 113 613 43 HOH HOH . 
P 7 HOH A 114 614 80 HOH HOH . 
P 7 HOH A 115 615 32 HOH HOH . 
P 7 HOH A 116 616 188 HOH HOH . 
P 7 HOH A 117 617 115 HOH HOH . 
P 7 HOH A 118 618 185 HOH HOH . 
P 7 HOH A 119 619 66 HOH HOH . 
P 7 HOH A 120 620 81 HOH HOH . 
P 7 HOH A 121 621 65 HOH HOH . 
P 7 HOH A 122 622 198 HOH HOH . 
P 7 HOH A 123 623 194 HOH HOH . 
P 7 HOH A 124 624 145 HOH HOH . 
P 7 HOH A 125 625 119 HOH HOH . 
P 7 HOH A 126 626 154 HOH HOH . 
P 7 HOH A 127 627 137 HOH HOH . 
P 7 HOH A 128 628 126 HOH HOH . 
P 7 HOH A 129 629 207 HOH HOH . 
P 7 HOH A 130 630 155 HOH HOH . 
P 7 HOH A 131 631 34 HOH HOH . 
P 7 HOH A 132 632 182 HOH HOH . 
P 7 HOH A 133 633 186 HOH HOH . 
P 7 HOH A 134 634 114 HOH HOH . 
P 7 HOH A 135 635 99 HOH HOH . 
P 7 HOH A 136 636 202 HOH HOH . 
P 7 HOH A 137 637 72 HOH HOH . 
P 7 HOH A 138 638 161 HOH HOH . 
P 7 HOH A 139 639 59 HOH HOH . 
P 7 HOH A 140 640 48 HOH HOH . 
P 7 HOH A 141 641 111 HOH HOH . 
P 7 HOH A 142 642 157 HOH HOH . 
P 7 HOH A 143 643 135 HOH HOH . 
P 7 HOH A 144 644 138 HOH HOH . 
P 7 HOH A 145 645 195 HOH HOH . 
P 7 HOH A 146 646 129 HOH HOH . 
P 7 HOH A 147 647 93 HOH HOH . 
P 7 HOH A 148 648 183 HOH HOH . 
P 7 HOH A 149 649 158 HOH HOH . 
P 7 HOH A 150 650 153 HOH HOH . 
P 7 HOH A 151 651 142 HOH HOH . 
P 7 HOH A 152 652 121 HOH HOH . 
P 7 HOH A 153 653 159 HOH HOH . 
P 7 HOH A 154 654 192 HOH HOH . 
P 7 HOH A 155 655 133 HOH HOH . 
P 7 HOH A 156 656 91 HOH HOH . 
P 7 HOH A 157 657 77 HOH HOH . 
P 7 HOH A 158 658 180 HOH HOH . 
P 7 HOH A 159 659 116 HOH HOH . 
P 7 HOH A 160 660 108 HOH HOH . 
P 7 HOH A 161 661 204 HOH HOH . 
P 7 HOH A 162 662 162 HOH HOH . 
P 7 HOH A 163 663 107 HOH HOH . 
P 7 HOH A 164 664 152 HOH HOH . 
P 7 HOH A 165 665 170 HOH HOH . 
P 7 HOH A 166 666 160 HOH HOH . 
P 7 HOH A 167 667 86 HOH HOH . 
P 7 HOH A 168 668 105 HOH HOH . 
P 7 HOH A 169 669 125 HOH HOH . 
P 7 HOH A 170 670 150 HOH HOH . 
P 7 HOH A 171 671 179 HOH HOH . 
P 7 HOH A 172 672 151 HOH HOH . 
Q 7 HOH S 1 1001 97 HOH HOH . 
Q 7 HOH S 2 1002 191 HOH HOH . 
Q 7 HOH S 3 1003 113 HOH HOH . 
Q 7 HOH S 4 1004 104 HOH HOH . 
Q 7 HOH S 5 1005 173 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . M 4 23.862 41.357 3.02 1 85.66 ? C1 GOL 411 A 1 
HETATM 2 O O1 GOL . . . M 4 22.822 40.412 3.271 1 90.55 ? O1 GOL 411 A 1 
HETATM 3 C C2 GOL . . . M 4 25.147 40.82 3.616 1 85.83 ? C2 GOL 411 A 1 
HETATM 4 O O2 GOL . . . M 4 24.908 40.505 4.981 1 89.24 ? O2 GOL 411 A 1 
HETATM 5 C C3 GOL . . . M 4 26.223 41.884 3.549 1 84.14 ? C3 GOL 411 A 1 
HETATM 6 O O3 GOL . . . M 4 27.417 41.354 4.122 1 85.45 ? O3 GOL 411 A 1 
#
_model_server_stats.io_time_ms              39 
_model_server_stats.parse_time_ms           53 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           976 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#