data_6HKX # _model_server_result.job_id KqKSBB_4ApxJSFrObWWvBw _model_server_result.datetime_utc '2024-10-20 19:04:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hkx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":604}' # _entry.id 6HKX # _exptl.entry_id 6HKX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HKX _cell.length_a 68.91 _cell.length_b 80.13 _cell.length_c 135.81 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HKX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 112 A THR 112 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc2 C O1B ADP . A ADP 601 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc3 E MG MG . A MG 603 1_555 K O HOH . A HOH 722 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc4 E MG MG . A MG 603 1_555 K O HOH . A HOH 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? metalc ? metalc5 E MG MG . A MG 603 1_555 K O HOH . A HOH 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc6 E MG MG . A MG 603 1_555 K O HOH . A HOH 746 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc7 B OG1 THR 112 B THR 112 1_555 I MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc8 G O1B ADP . B ADP 601 1_555 I MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc9 I MG MG . B MG 603 1_555 L O HOH . B HOH 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc10 I MG MG . B MG 603 1_555 L O HOH . B HOH 729 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 334 n n C1 C2 PEG sing 335 n n C1 H11 PEG sing 336 n n C1 H12 PEG sing 337 n n O1 HO1 PEG sing 338 n n C2 O2 PEG sing 339 n n C2 H21 PEG sing 340 n n C2 H22 PEG sing 341 n n O2 C3 PEG sing 342 n n C3 C4 PEG sing 343 n n C3 H31 PEG sing 344 n n C3 H32 PEG sing 345 n n C4 O4 PEG sing 346 n n C4 H41 PEG sing 347 n n C4 H42 PEG sing 348 n n O4 HO4 PEG sing 349 n n # _atom_sites.entry_id 6HKX _atom_sites.fract_transf_matrix[1][1] 0.014512 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01248 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007363 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 601 601 ADP ADP . D 3 GCE A 1 602 701 GCE ARY . E 4 MG A 1 603 1 MG MG . F 5 PEG A 1 604 1 PEG PEG . G 2 ADP B 1 601 601 ADP ADP . H 3 GCE B 1 602 701 GCE ARY . I 4 MG B 1 603 2 MG MG . J 5 PEG B 1 604 2 PEG PEG . K 6 HOH A 1 701 142 HOH HOH . K 6 HOH A 2 702 111 HOH HOH . K 6 HOH A 3 703 83 HOH HOH . K 6 HOH A 4 704 70 HOH HOH . K 6 HOH A 5 705 14 HOH HOH . K 6 HOH A 6 706 128 HOH HOH . K 6 HOH A 7 707 102 HOH HOH . K 6 HOH A 8 708 179 HOH HOH . K 6 HOH A 9 709 5 HOH HOH . K 6 HOH A 10 710 137 HOH HOH . K 6 HOH A 11 711 112 HOH HOH . K 6 HOH A 12 712 107 HOH HOH . K 6 HOH A 13 713 148 HOH HOH . K 6 HOH A 14 714 17 HOH HOH . K 6 HOH A 15 715 138 HOH HOH . K 6 HOH A 16 716 151 HOH HOH . K 6 HOH A 17 717 6 HOH HOH . K 6 HOH A 18 718 206 HOH HOH . K 6 HOH A 19 719 198 HOH HOH . K 6 HOH A 20 720 22 HOH HOH . K 6 HOH A 21 721 7 HOH HOH . K 6 HOH A 22 722 101 HOH HOH . K 6 HOH A 23 723 35 HOH HOH . K 6 HOH A 24 724 2 HOH HOH . K 6 HOH A 25 725 13 HOH HOH . K 6 HOH A 26 726 207 HOH HOH . K 6 HOH A 27 727 25 HOH HOH . K 6 HOH A 28 728 38 HOH HOH . K 6 HOH A 29 729 116 HOH HOH . K 6 HOH A 30 730 23 HOH HOH . K 6 HOH A 31 731 82 HOH HOH . K 6 HOH A 32 732 53 HOH HOH . K 6 HOH A 33 733 109 HOH HOH . K 6 HOH A 34 734 79 HOH HOH . K 6 HOH A 35 735 166 HOH HOH . K 6 HOH A 36 736 152 HOH HOH . K 6 HOH A 37 737 59 HOH HOH . K 6 HOH A 38 738 19 HOH HOH . K 6 HOH A 39 739 26 HOH HOH . K 6 HOH A 40 740 90 HOH HOH . K 6 HOH A 41 741 197 HOH HOH . K 6 HOH A 42 742 10 HOH HOH . K 6 HOH A 43 743 208 HOH HOH . K 6 HOH A 44 744 186 HOH HOH . K 6 HOH A 45 745 204 HOH HOH . K 6 HOH A 46 746 182 HOH HOH . K 6 HOH A 47 747 49 HOH HOH . K 6 HOH A 48 748 100 HOH HOH . K 6 HOH A 49 749 56 HOH HOH . K 6 HOH A 50 750 46 HOH HOH . K 6 HOH A 51 751 58 HOH HOH . K 6 HOH A 52 752 125 HOH HOH . K 6 HOH A 53 753 123 HOH HOH . K 6 HOH A 54 754 66 HOH HOH . K 6 HOH A 55 755 48 HOH HOH . K 6 HOH A 56 756 103 HOH HOH . K 6 HOH A 57 757 194 HOH HOH . K 6 HOH A 58 758 9 HOH HOH . K 6 HOH A 59 759 130 HOH HOH . K 6 HOH A 60 760 20 HOH HOH . K 6 HOH A 61 761 118 HOH HOH . K 6 HOH A 62 762 96 HOH HOH . K 6 HOH A 63 763 85 HOH HOH . K 6 HOH A 64 764 31 HOH HOH . K 6 HOH A 65 765 95 HOH HOH . K 6 HOH A 66 766 124 HOH HOH . K 6 HOH A 67 767 36 HOH HOH . K 6 HOH A 68 768 77 HOH HOH . K 6 HOH A 69 769 50 HOH HOH . K 6 HOH A 70 770 155 HOH HOH . K 6 HOH A 71 771 141 HOH HOH . K 6 HOH A 72 772 184 HOH HOH . K 6 HOH A 73 773 91 HOH HOH . K 6 HOH A 74 774 181 HOH HOH . K 6 HOH A 75 775 135 HOH HOH . K 6 HOH A 76 776 104 HOH HOH . K 6 HOH A 77 777 94 HOH HOH . K 6 HOH A 78 778 187 HOH HOH . K 6 HOH A 79 779 192 HOH HOH . K 6 HOH A 80 780 180 HOH HOH . K 6 HOH A 81 781 92 HOH HOH . K 6 HOH A 82 782 178 HOH HOH . K 6 HOH A 83 783 209 HOH HOH . K 6 HOH A 84 784 196 HOH HOH . K 6 HOH A 85 785 78 HOH HOH . K 6 HOH A 86 786 69 HOH HOH . K 6 HOH A 87 787 193 HOH HOH . K 6 HOH A 88 788 34 HOH HOH . K 6 HOH A 89 789 190 HOH HOH . K 6 HOH A 90 790 205 HOH HOH . K 6 HOH A 91 791 1 HOH HOH . K 6 HOH A 92 792 157 HOH HOH . K 6 HOH A 93 793 145 HOH HOH . K 6 HOH A 94 794 183 HOH HOH . K 6 HOH A 95 795 185 HOH HOH . K 6 HOH A 96 796 139 HOH HOH . K 6 HOH A 97 797 168 HOH HOH . K 6 HOH A 98 798 170 HOH HOH . L 6 HOH B 1 701 110 HOH HOH . L 6 HOH B 2 702 113 HOH HOH . L 6 HOH B 3 703 161 HOH HOH . L 6 HOH B 4 704 27 HOH HOH . L 6 HOH B 5 705 44 HOH HOH . L 6 HOH B 6 706 172 HOH HOH . L 6 HOH B 7 707 199 HOH HOH . L 6 HOH B 8 708 210 HOH HOH . L 6 HOH B 9 709 117 HOH HOH . L 6 HOH B 10 710 159 HOH HOH . L 6 HOH B 11 711 41 HOH HOH . L 6 HOH B 12 712 8 HOH HOH . L 6 HOH B 13 713 108 HOH HOH . L 6 HOH B 14 714 202 HOH HOH . L 6 HOH B 15 715 61 HOH HOH . L 6 HOH B 16 716 12 HOH HOH . L 6 HOH B 17 717 114 HOH HOH . L 6 HOH B 18 718 177 HOH HOH . L 6 HOH B 19 719 150 HOH HOH . L 6 HOH B 20 720 174 HOH HOH . L 6 HOH B 21 721 52 HOH HOH . L 6 HOH B 22 722 87 HOH HOH . L 6 HOH B 23 723 120 HOH HOH . L 6 HOH B 24 724 30 HOH HOH . L 6 HOH B 25 725 93 HOH HOH . L 6 HOH B 26 726 81 HOH HOH . L 6 HOH B 27 727 68 HOH HOH . L 6 HOH B 28 728 11 HOH HOH . L 6 HOH B 29 729 47 HOH HOH . L 6 HOH B 30 730 51 HOH HOH . L 6 HOH B 31 731 188 HOH HOH . L 6 HOH B 32 732 122 HOH HOH . L 6 HOH B 33 733 16 HOH HOH . L 6 HOH B 34 734 32 HOH HOH . L 6 HOH B 35 735 40 HOH HOH . L 6 HOH B 36 736 60 HOH HOH . L 6 HOH B 37 737 143 HOH HOH . L 6 HOH B 38 738 55 HOH HOH . L 6 HOH B 39 739 18 HOH HOH . L 6 HOH B 40 740 29 HOH HOH . L 6 HOH B 41 741 129 HOH HOH . L 6 HOH B 42 742 21 HOH HOH . L 6 HOH B 43 743 126 HOH HOH . L 6 HOH B 44 744 63 HOH HOH . L 6 HOH B 45 745 132 HOH HOH . L 6 HOH B 46 746 154 HOH HOH . L 6 HOH B 47 747 75 HOH HOH . L 6 HOH B 48 748 115 HOH HOH . L 6 HOH B 49 749 136 HOH HOH . L 6 HOH B 50 750 15 HOH HOH . L 6 HOH B 51 751 84 HOH HOH . L 6 HOH B 52 752 162 HOH HOH . L 6 HOH B 53 753 45 HOH HOH . L 6 HOH B 54 754 37 HOH HOH . L 6 HOH B 55 755 24 HOH HOH . L 6 HOH B 56 756 163 HOH HOH . L 6 HOH B 57 757 74 HOH HOH . L 6 HOH B 58 758 164 HOH HOH . L 6 HOH B 59 759 72 HOH HOH . L 6 HOH B 60 760 33 HOH HOH . L 6 HOH B 61 761 64 HOH HOH . L 6 HOH B 62 762 57 HOH HOH . L 6 HOH B 63 763 201 HOH HOH . L 6 HOH B 64 764 4 HOH HOH . L 6 HOH B 65 765 88 HOH HOH . L 6 HOH B 66 766 212 HOH HOH . L 6 HOH B 67 767 39 HOH HOH . L 6 HOH B 68 768 133 HOH HOH . L 6 HOH B 69 769 106 HOH HOH . L 6 HOH B 70 770 203 HOH HOH . L 6 HOH B 71 771 62 HOH HOH . L 6 HOH B 72 772 3 HOH HOH . L 6 HOH B 73 773 89 HOH HOH . L 6 HOH B 74 774 99 HOH HOH . L 6 HOH B 75 775 153 HOH HOH . L 6 HOH B 76 776 175 HOH HOH . L 6 HOH B 77 777 80 HOH HOH . L 6 HOH B 78 778 127 HOH HOH . L 6 HOH B 79 779 171 HOH HOH . L 6 HOH B 80 780 98 HOH HOH . L 6 HOH B 81 781 73 HOH HOH . L 6 HOH B 82 782 200 HOH HOH . L 6 HOH B 83 783 121 HOH HOH . L 6 HOH B 84 784 54 HOH HOH . L 6 HOH B 85 785 211 HOH HOH . L 6 HOH B 86 786 147 HOH HOH . L 6 HOH B 87 787 173 HOH HOH . L 6 HOH B 88 788 43 HOH HOH . L 6 HOH B 89 789 189 HOH HOH . L 6 HOH B 90 790 195 HOH HOH . L 6 HOH B 91 791 86 HOH HOH . L 6 HOH B 92 792 131 HOH HOH . L 6 HOH B 93 793 134 HOH HOH . L 6 HOH B 94 794 28 HOH HOH . L 6 HOH B 95 795 65 HOH HOH . L 6 HOH B 96 796 169 HOH HOH . L 6 HOH B 97 797 76 HOH HOH . L 6 HOH B 98 798 71 HOH HOH . L 6 HOH B 99 799 149 HOH HOH . L 6 HOH B 100 800 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . F 5 3.635 11.28 -14.321 1 16.92 ? C1 PEG 604 A 1 HETATM 2 O O1 PEG . . . F 5 4.266 11.423 -15.564 1 15.89 ? O1 PEG 604 A 1 HETATM 3 C C2 PEG . . . F 5 2.118 11.378 -14.543 1 21.54 ? C2 PEG 604 A 1 HETATM 4 O O2 PEG . . . F 5 1.467 10.253 -13.99 1 17.62 ? O2 PEG 604 A 1 HETATM 5 C C3 PEG . . . F 5 0.884 9.37 -14.931 1 17.3 ? C3 PEG 604 A 1 HETATM 6 C C4 PEG . . . F 5 0.481 8.03 -14.298 1 7.82 ? C4 PEG 604 A 1 HETATM 7 O O4 PEG . . . F 5 0.683 7.039 -15.261 1 9.12 ? O4 PEG 604 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 7 #