data_6HL4 # _model_server_result.job_id boUdjxFB8IDiC_qHmVTUPQ _model_server_result.datetime_utc '2024-10-25 20:28:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hl4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":501}' # _entry.id 6HL4 # _exptl.entry_id 6HL4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HL4 _cell.length_a 59.741 _cell.length_b 108.117 _cell.length_c 188.181 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HL4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,L,M 1 1 C,D,I,J,K,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 86 A CYS 86 1_555 E FE1 FES . A FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc2 A SG CYS 91 A CYS 91 1_555 E FE1 FES . A FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc3 A SG CYS 127 A CYS 127 1_555 E FE2 FES . A FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc4 A SG CYS 131 A CYS 131 1_555 E FE2 FES . A FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc5 B SG CYS 347 B CYS 347 1_555 F FE1 SF4 . B SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc6 B SG CYS 350 B CYS 350 1_555 F FE4 SF4 . B SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc7 B SG CYS 353 B CYS 353 1_555 F FE2 SF4 . B SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc8 B SG CYS 393 B CYS 393 1_555 F FE3 SF4 . B SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc9 C SG CYS 86 C CYS 86 1_555 I FE1 FES . C FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc10 C SG CYS 91 C CYS 91 1_555 I FE1 FES . C FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc11 C SG CYS 127 C CYS 127 1_555 I FE2 FES . C FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc12 C SG CYS 131 C CYS 131 1_555 I FE2 FES . C FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc13 D SG CYS 347 D CYS 347 1_555 J FE1 SF4 . D SF4 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc14 D SG CYS 350 D CYS 350 1_555 J FE4 SF4 . D SF4 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc15 D SG CYS 353 D CYS 353 1_555 J FE2 SF4 . D SF4 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc16 D SG CYS 393 D CYS 393 1_555 J FE3 SF4 . D SF4 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 87 n n N1 C10 FMN doub 88 n n C2 O2 FMN doub 89 n n C2 N3 FMN sing 90 n n N3 C4 FMN sing 91 n n N3 HN3 FMN sing 92 n n C4 O4 FMN doub 93 n n C4 C4A FMN sing 94 n n C4A N5 FMN doub 95 n n C4A C10 FMN sing 96 n n N5 C5A FMN sing 97 n n C5A C6 FMN doub 98 n y C5A C9A FMN sing 99 n y C6 C7 FMN sing 100 n y C6 H6 FMN sing 101 n n C7 C7M FMN sing 102 n n C7 C8 FMN doub 103 n y C7M HM71 FMN sing 104 n n C7M HM72 FMN sing 105 n n C7M HM73 FMN sing 106 n n C8 C8M FMN sing 107 n n C8 C9 FMN sing 108 n y C8M HM81 FMN sing 109 n n C8M HM82 FMN sing 110 n n C8M HM83 FMN sing 111 n n C9 C9A FMN doub 112 n y C9 H9 FMN sing 113 n n C9A N10 FMN sing 114 n n N10 C10 FMN sing 115 n n N10 C1' FMN sing 116 n n C1' C2' FMN sing 117 n n C1' "H1'1" FMN sing 118 n n C1' "H1'2" FMN sing 119 n n C2' O2' FMN sing 120 n n C2' C3' FMN sing 121 n n C2' H2' FMN sing 122 n n O2' HO2' FMN sing 123 n n C3' O3' FMN sing 124 n n C3' C4' FMN sing 125 n n C3' H3' FMN sing 126 n n O3' HO3' FMN sing 127 n n C4' O4' FMN sing 128 n n C4' C5' FMN sing 129 n n C4' H4' FMN sing 130 n n O4' HO4' FMN sing 131 n n C5' O5' FMN sing 132 n n C5' "H5'1" FMN sing 133 n n C5' "H5'2" FMN sing 134 n n O5' P FMN sing 135 n n P O1P FMN doub 136 n n P O2P FMN sing 137 n n P O3P FMN sing 138 n n O2P HOP2 FMN sing 139 n n O3P HOP3 FMN sing 140 n n # _atom_sites.entry_id 6HL4 _atom_sites.fract_transf_matrix[1][1] 0.016739 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009249 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005314 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 FES A 1 200 200 FES FES . F 4 SF4 B 1 501 500 SF4 SF4 . G 5 FMN B 1 502 501 FMN FMN . H 6 CL B 1 503 1 CL CL . I 3 FES C 1 200 200 FES FES . J 4 SF4 D 1 500 500 SF4 SF4 . K 5 FMN D 1 501 501 FMN FMN . L 7 HOH A 1 301 111 HOH HOH . L 7 HOH A 2 302 60 HOH HOH . L 7 HOH A 3 303 77 HOH HOH . L 7 HOH A 4 304 90 HOH HOH . L 7 HOH A 5 305 26 HOH HOH . L 7 HOH A 6 306 89 HOH HOH . L 7 HOH A 7 307 4 HOH HOH . L 7 HOH A 8 308 80 HOH HOH . L 7 HOH A 9 309 81 HOH HOH . L 7 HOH A 10 310 86 HOH HOH . L 7 HOH A 11 311 88 HOH HOH . L 7 HOH A 12 312 52 HOH HOH . L 7 HOH A 13 313 84 HOH HOH . L 7 HOH A 14 314 76 HOH HOH . L 7 HOH A 15 315 87 HOH HOH . L 7 HOH A 16 316 82 HOH HOH . L 7 HOH A 17 317 127 HOH HOH . L 7 HOH A 18 318 126 HOH HOH . L 7 HOH A 19 319 83 HOH HOH . M 7 HOH B 1 601 33 HOH HOH . M 7 HOH B 2 602 18 HOH HOH . M 7 HOH B 3 603 69 HOH HOH . M 7 HOH B 4 604 92 HOH HOH . M 7 HOH B 5 605 19 HOH HOH . M 7 HOH B 6 606 45 HOH HOH . M 7 HOH B 7 607 30 HOH HOH . M 7 HOH B 8 608 62 HOH HOH . M 7 HOH B 9 609 49 HOH HOH . M 7 HOH B 10 610 7 HOH HOH . M 7 HOH B 11 611 37 HOH HOH . M 7 HOH B 12 612 14 HOH HOH . M 7 HOH B 13 613 29 HOH HOH . M 7 HOH B 14 614 6 HOH HOH . M 7 HOH B 15 615 97 HOH HOH . M 7 HOH B 16 616 16 HOH HOH . M 7 HOH B 17 617 79 HOH HOH . M 7 HOH B 18 618 27 HOH HOH . M 7 HOH B 19 619 23 HOH HOH . M 7 HOH B 20 620 32 HOH HOH . M 7 HOH B 21 621 41 HOH HOH . M 7 HOH B 22 622 85 HOH HOH . M 7 HOH B 23 623 1 HOH HOH . M 7 HOH B 24 624 34 HOH HOH . M 7 HOH B 25 625 72 HOH HOH . M 7 HOH B 26 626 70 HOH HOH . M 7 HOH B 27 627 103 HOH HOH . M 7 HOH B 28 628 100 HOH HOH . M 7 HOH B 29 629 43 HOH HOH . M 7 HOH B 30 630 50 HOH HOH . M 7 HOH B 31 631 94 HOH HOH . M 7 HOH B 32 632 11 HOH HOH . M 7 HOH B 33 633 109 HOH HOH . M 7 HOH B 34 634 106 HOH HOH . M 7 HOH B 35 635 93 HOH HOH . M 7 HOH B 36 636 104 HOH HOH . M 7 HOH B 37 637 102 HOH HOH . M 7 HOH B 38 638 107 HOH HOH . M 7 HOH B 39 639 56 HOH HOH . M 7 HOH B 40 640 96 HOH HOH . M 7 HOH B 41 641 12 HOH HOH . M 7 HOH B 42 642 95 HOH HOH . M 7 HOH B 43 643 61 HOH HOH . M 7 HOH B 44 644 15 HOH HOH . M 7 HOH B 45 645 64 HOH HOH . M 7 HOH B 46 646 105 HOH HOH . M 7 HOH B 47 647 66 HOH HOH . M 7 HOH B 48 648 114 HOH HOH . M 7 HOH B 49 649 120 HOH HOH . M 7 HOH B 50 650 78 HOH HOH . M 7 HOH B 51 651 99 HOH HOH . M 7 HOH B 52 652 101 HOH HOH . M 7 HOH B 53 653 98 HOH HOH . N 7 HOH C 1 301 53 HOH HOH . N 7 HOH C 2 302 124 HOH HOH . N 7 HOH C 3 303 42 HOH HOH . N 7 HOH C 4 304 28 HOH HOH . N 7 HOH C 5 305 9 HOH HOH . N 7 HOH C 6 306 123 HOH HOH . N 7 HOH C 7 307 31 HOH HOH . N 7 HOH C 8 308 25 HOH HOH . N 7 HOH C 9 309 51 HOH HOH . N 7 HOH C 10 310 46 HOH HOH . O 7 HOH D 1 601 40 HOH HOH . O 7 HOH D 2 602 3 HOH HOH . O 7 HOH D 3 603 55 HOH HOH . O 7 HOH D 4 604 39 HOH HOH . O 7 HOH D 5 605 58 HOH HOH . O 7 HOH D 6 606 21 HOH HOH . O 7 HOH D 7 607 2 HOH HOH . O 7 HOH D 8 608 91 HOH HOH . O 7 HOH D 9 609 59 HOH HOH . O 7 HOH D 10 610 74 HOH HOH . O 7 HOH D 11 611 38 HOH HOH . O 7 HOH D 12 612 112 HOH HOH . O 7 HOH D 13 613 24 HOH HOH . O 7 HOH D 14 614 75 HOH HOH . O 7 HOH D 15 615 110 HOH HOH . O 7 HOH D 16 616 22 HOH HOH . O 7 HOH D 17 617 10 HOH HOH . O 7 HOH D 18 618 5 HOH HOH . O 7 HOH D 19 619 20 HOH HOH . O 7 HOH D 20 620 13 HOH HOH . O 7 HOH D 21 621 125 HOH HOH . O 7 HOH D 22 622 44 HOH HOH . O 7 HOH D 23 623 17 HOH HOH . O 7 HOH D 24 624 121 HOH HOH . O 7 HOH D 25 625 108 HOH HOH . O 7 HOH D 26 626 113 HOH HOH . O 7 HOH D 27 627 63 HOH HOH . O 7 HOH D 28 628 36 HOH HOH . O 7 HOH D 29 629 119 HOH HOH . O 7 HOH D 30 630 8 HOH HOH . O 7 HOH D 31 631 47 HOH HOH . O 7 HOH D 32 632 54 HOH HOH . O 7 HOH D 33 633 68 HOH HOH . O 7 HOH D 34 634 117 HOH HOH . O 7 HOH D 35 635 65 HOH HOH . O 7 HOH D 36 636 48 HOH HOH . O 7 HOH D 37 637 71 HOH HOH . O 7 HOH D 38 638 122 HOH HOH . O 7 HOH D 39 639 35 HOH HOH . O 7 HOH D 40 640 57 HOH HOH . O 7 HOH D 41 641 115 HOH HOH . O 7 HOH D 42 642 73 HOH HOH . O 7 HOH D 43 643 116 HOH HOH . O 7 HOH D 44 644 67 HOH HOH . O 7 HOH D 45 645 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . K 5 19.218 11.451 -56.117 1 19.09 ? N1 FMN 501 D 1 HETATM 2 C C2 FMN . . . K 5 19.231 10.577 -55.076 1 20.95 ? C2 FMN 501 D 1 HETATM 3 O O2 FMN . . . K 5 18.587 10.807 -54.053 1 23.41 ? O2 FMN 501 D 1 HETATM 4 N N3 FMN . . . K 5 19.892 9.361 -55.195 1 20.6 ? N3 FMN 501 D 1 HETATM 5 C C4 FMN . . . K 5 20.549 8.9 -56.321 1 23.13 ? C4 FMN 501 D 1 HETATM 6 O O4 FMN . . . K 5 21.093 7.8 -56.306 1 26.95 ? O4 FMN 501 D 1 HETATM 7 C C4A FMN . . . K 5 20.508 9.828 -57.448 1 21.45 ? C4A FMN 501 D 1 HETATM 8 N N5 FMN . . . K 5 21.031 9.45 -58.579 1 18.14 ? N5 FMN 501 D 1 HETATM 9 C C5A FMN . . . K 5 20.91 10.309 -59.671 1 16.93 ? C5A FMN 501 D 1 HETATM 10 C C6 FMN . . . K 5 21.425 9.9 -60.906 1 14.62 ? C6 FMN 501 D 1 HETATM 11 C C7 FMN . . . K 5 21.353 10.725 -62.025 1 12.77 ? C7 FMN 501 D 1 HETATM 12 C C7M FMN . . . K 5 21.886 10.229 -63.344 1 13.07 ? C7M FMN 501 D 1 HETATM 13 C C8 FMN . . . K 5 20.762 12.006 -61.908 1 13.68 ? C8 FMN 501 D 1 HETATM 14 C C8M FMN . . . K 5 20.783 12.991 -63.053 1 13.95 ? C8M FMN 501 D 1 HETATM 15 C C9 FMN . . . K 5 20.224 12.402 -60.69 1 13.62 ? C9 FMN 501 D 1 HETATM 16 C C9A FMN . . . K 5 20.286 11.571 -59.573 1 17.21 ? C9A FMN 501 D 1 HETATM 17 N N10 FMN . . . K 5 19.726 11.946 -58.32 1 20.39 ? N10 FMN 501 D 1 HETATM 18 C C10 FMN . . . K 5 19.816 11.095 -57.243 1 20.35 ? C10 FMN 501 D 1 HETATM 19 C C1' FMN . . . K 5 18.992 13.219 -58.206 1 19.56 ? C1' FMN 501 D 1 HETATM 20 C C2' FMN . . . K 5 17.487 13.058 -58.411 1 19.38 ? C2' FMN 501 D 1 HETATM 21 O O2' FMN . . . K 5 17.156 13.257 -59.788 1 20.13 ? O2' FMN 501 D 1 HETATM 22 C C3' FMN . . . K 5 16.694 14.064 -57.573 1 20.69 ? C3' FMN 501 D 1 HETATM 23 O O3' FMN . . . K 5 17.2 15.379 -57.801 1 19.64 ? O3' FMN 501 D 1 HETATM 24 C C4' FMN . . . K 5 16.635 13.812 -56.063 1 18.76 ? C4' FMN 501 D 1 HETATM 25 O O4' FMN . . . K 5 16.244 12.471 -55.758 1 19.92 ? O4' FMN 501 D 1 HETATM 26 C C5' FMN . . . K 5 15.681 14.77 -55.394 1 14.05 ? C5' FMN 501 D 1 HETATM 27 O O5' FMN . . . K 5 15.733 14.584 -53.972 1 17.99 ? O5' FMN 501 D 1 HETATM 28 P P FMN . . . K 5 16.356 15.744 -53.021 1 21.56 ? P FMN 501 D 1 HETATM 29 O O1P FMN . . . K 5 17.812 15.848 -53.229 1 22.94 ? O1P FMN 501 D 1 HETATM 30 O O2P FMN . . . K 5 15.618 17.056 -53.335 1 18.73 ? O2P FMN 501 D 1 HETATM 31 O O3P FMN . . . K 5 15.994 15.313 -51.629 1 22.42 ? O3P FMN 501 D 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 31 #