data_6HL6 # _model_server_result.job_id R9QUMbdlFNujwYtsXHPn9A _model_server_result.datetime_utc '2024-11-28 20:57:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hl6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":405}' # _entry.id 6HL6 # _exptl.entry_id 6HL6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HL6 _cell.length_a 86.084 _cell.length_b 86.084 _cell.length_c 148.752 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HL6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 200 A HIS 199 1_555 K ZN ZN . A ZN 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc2 A OD2 ASP 202 A ASP 201 1_555 K ZN ZN . A ZN 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc3 A NE2 HIS 280 A HIS 279 1_555 K ZN ZN . A ZN 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc4 K ZN ZN . A ZN 409 1_555 L O2 OGA . A OGA 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc5 K ZN ZN . A ZN 409 1_555 L O2' OGA . A OGA 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc6 K ZN ZN . A ZN 409 1_555 M O HOH . A HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6HL6 _atom_sites.fract_transf_matrix[1][1] 0.011617 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011617 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006723 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 401 1 GOL GOL . D 3 GOL A 1 402 2 GOL GOL . E 3 GOL A 1 403 3 GOL GOL . F 3 GOL A 1 404 801 GOL GOL . G 3 GOL A 1 405 802 GOL GOL . H 4 SO4 A 1 406 701 SO4 SO4 . I 4 SO4 A 1 407 702 SO4 SO4 . J 4 SO4 A 1 408 704 SO4 SO4 . K 5 ZN A 1 409 501 ZN ZN . L 6 OGA A 1 410 601 OGA OGA . M 7 HOH A 1 501 18 HOH HOH . M 7 HOH A 2 502 133 HOH HOH . M 7 HOH A 3 503 129 HOH HOH . M 7 HOH A 4 504 66 HOH HOH . M 7 HOH A 5 505 52 HOH HOH . M 7 HOH A 6 506 95 HOH HOH . M 7 HOH A 7 507 246 HOH HOH . M 7 HOH A 8 508 169 HOH HOH . M 7 HOH A 9 509 76 HOH HOH . M 7 HOH A 10 510 113 HOH HOH . M 7 HOH A 11 511 201 HOH HOH . M 7 HOH A 12 512 63 HOH HOH . M 7 HOH A 13 513 230 HOH HOH . M 7 HOH A 14 514 97 HOH HOH . M 7 HOH A 15 515 94 HOH HOH . M 7 HOH A 16 516 157 HOH HOH . M 7 HOH A 17 517 54 HOH HOH . M 7 HOH A 18 518 147 HOH HOH . M 7 HOH A 19 519 11 HOH HOH . M 7 HOH A 20 520 181 HOH HOH . M 7 HOH A 21 521 12 HOH HOH . M 7 HOH A 22 522 40 HOH HOH . M 7 HOH A 23 523 111 HOH HOH . M 7 HOH A 24 524 9 HOH HOH . M 7 HOH A 25 525 117 HOH HOH . M 7 HOH A 26 526 123 HOH HOH . M 7 HOH A 27 527 107 HOH HOH . M 7 HOH A 28 528 130 HOH HOH . M 7 HOH A 29 529 8 HOH HOH . M 7 HOH A 30 530 45 HOH HOH . M 7 HOH A 31 531 4 HOH HOH . M 7 HOH A 32 532 49 HOH HOH . M 7 HOH A 33 533 46 HOH HOH . M 7 HOH A 34 534 159 HOH HOH . M 7 HOH A 35 535 153 HOH HOH . M 7 HOH A 36 536 124 HOH HOH . M 7 HOH A 37 537 109 HOH HOH . M 7 HOH A 38 538 165 HOH HOH . M 7 HOH A 39 539 78 HOH HOH . M 7 HOH A 40 540 74 HOH HOH . M 7 HOH A 41 541 32 HOH HOH . M 7 HOH A 42 542 100 HOH HOH . M 7 HOH A 43 543 93 HOH HOH . M 7 HOH A 44 544 238 HOH HOH . M 7 HOH A 45 545 73 HOH HOH . M 7 HOH A 46 546 55 HOH HOH . M 7 HOH A 47 547 156 HOH HOH . M 7 HOH A 48 548 80 HOH HOH . M 7 HOH A 49 549 44 HOH HOH . M 7 HOH A 50 550 114 HOH HOH . M 7 HOH A 51 551 120 HOH HOH . M 7 HOH A 52 552 60 HOH HOH . M 7 HOH A 53 553 81 HOH HOH . M 7 HOH A 54 554 140 HOH HOH . M 7 HOH A 55 555 91 HOH HOH . M 7 HOH A 56 556 89 HOH HOH . M 7 HOH A 57 557 77 HOH HOH . M 7 HOH A 58 558 214 HOH HOH . M 7 HOH A 59 559 86 HOH HOH . M 7 HOH A 60 560 225 HOH HOH . M 7 HOH A 61 561 227 HOH HOH . M 7 HOH A 62 562 65 HOH HOH . M 7 HOH A 63 563 16 HOH HOH . M 7 HOH A 64 564 151 HOH HOH . M 7 HOH A 65 565 2 HOH HOH . M 7 HOH A 66 566 47 HOH HOH . M 7 HOH A 67 567 56 HOH HOH . M 7 HOH A 68 568 102 HOH HOH . M 7 HOH A 69 569 72 HOH HOH . M 7 HOH A 70 570 224 HOH HOH . M 7 HOH A 71 571 50 HOH HOH . M 7 HOH A 72 572 171 HOH HOH . M 7 HOH A 73 573 75 HOH HOH . M 7 HOH A 74 574 71 HOH HOH . M 7 HOH A 75 575 186 HOH HOH . M 7 HOH A 76 576 68 HOH HOH . M 7 HOH A 77 577 85 HOH HOH . M 7 HOH A 78 578 250 HOH HOH . M 7 HOH A 79 579 155 HOH HOH . M 7 HOH A 80 580 204 HOH HOH . M 7 HOH A 81 581 245 HOH HOH . M 7 HOH A 82 582 58 HOH HOH . M 7 HOH A 83 583 61 HOH HOH . M 7 HOH A 84 584 87 HOH HOH . M 7 HOH A 85 585 119 HOH HOH . M 7 HOH A 86 586 48 HOH HOH . M 7 HOH A 87 587 62 HOH HOH . M 7 HOH A 88 588 103 HOH HOH . M 7 HOH A 89 589 118 HOH HOH . M 7 HOH A 90 590 141 HOH HOH . M 7 HOH A 91 591 84 HOH HOH . M 7 HOH A 92 592 104 HOH HOH . M 7 HOH A 93 593 53 HOH HOH . M 7 HOH A 94 594 82 HOH HOH . M 7 HOH A 95 595 126 HOH HOH . M 7 HOH A 96 596 131 HOH HOH . M 7 HOH A 97 597 172 HOH HOH . M 7 HOH A 98 598 33 HOH HOH . M 7 HOH A 99 599 69 HOH HOH . M 7 HOH A 100 600 152 HOH HOH . M 7 HOH A 101 601 121 HOH HOH . M 7 HOH A 102 602 7 HOH HOH . M 7 HOH A 103 603 200 HOH HOH . M 7 HOH A 104 604 90 HOH HOH . M 7 HOH A 105 605 125 HOH HOH . M 7 HOH A 106 606 179 HOH HOH . M 7 HOH A 107 607 20 HOH HOH . M 7 HOH A 108 608 226 HOH HOH . M 7 HOH A 109 609 23 HOH HOH . M 7 HOH A 110 610 108 HOH HOH . M 7 HOH A 111 611 70 HOH HOH . M 7 HOH A 112 612 79 HOH HOH . M 7 HOH A 113 613 217 HOH HOH . M 7 HOH A 114 614 150 HOH HOH . M 7 HOH A 115 615 57 HOH HOH . M 7 HOH A 116 616 101 HOH HOH . M 7 HOH A 117 617 37 HOH HOH . M 7 HOH A 118 618 110 HOH HOH . M 7 HOH A 119 619 202 HOH HOH . M 7 HOH A 120 620 173 HOH HOH . M 7 HOH A 121 621 51 HOH HOH . M 7 HOH A 122 622 164 HOH HOH . M 7 HOH A 123 623 248 HOH HOH . M 7 HOH A 124 624 34 HOH HOH . M 7 HOH A 125 625 170 HOH HOH . M 7 HOH A 126 626 257 HOH HOH . M 7 HOH A 127 627 122 HOH HOH . M 7 HOH A 128 628 216 HOH HOH . M 7 HOH A 129 629 92 HOH HOH . M 7 HOH A 130 630 64 HOH HOH . M 7 HOH A 131 631 160 HOH HOH . M 7 HOH A 132 632 137 HOH HOH . M 7 HOH A 133 633 234 HOH HOH . M 7 HOH A 134 634 168 HOH HOH . M 7 HOH A 135 635 167 HOH HOH . M 7 HOH A 136 636 185 HOH HOH . M 7 HOH A 137 637 194 HOH HOH . M 7 HOH A 138 638 254 HOH HOH . M 7 HOH A 139 639 136 HOH HOH . M 7 HOH A 140 640 106 HOH HOH . M 7 HOH A 141 641 59 HOH HOH . M 7 HOH A 142 642 25 HOH HOH . M 7 HOH A 143 643 206 HOH HOH . M 7 HOH A 144 644 88 HOH HOH . M 7 HOH A 145 645 42 HOH HOH . M 7 HOH A 146 646 184 HOH HOH . M 7 HOH A 147 647 112 HOH HOH . M 7 HOH A 148 648 116 HOH HOH . M 7 HOH A 149 649 258 HOH HOH . M 7 HOH A 150 650 190 HOH HOH . M 7 HOH A 151 651 21 HOH HOH . M 7 HOH A 152 652 161 HOH HOH . M 7 HOH A 153 653 174 HOH HOH . M 7 HOH A 154 654 249 HOH HOH . M 7 HOH A 155 655 259 HOH HOH . M 7 HOH A 156 656 132 HOH HOH . M 7 HOH A 157 657 134 HOH HOH . M 7 HOH A 158 658 177 HOH HOH . M 7 HOH A 159 659 158 HOH HOH . M 7 HOH A 160 660 143 HOH HOH . M 7 HOH A 161 661 144 HOH HOH . M 7 HOH A 162 662 17 HOH HOH . M 7 HOH A 163 663 255 HOH HOH . M 7 HOH A 164 664 235 HOH HOH . M 7 HOH A 165 665 67 HOH HOH . M 7 HOH A 166 666 105 HOH HOH . M 7 HOH A 167 667 15 HOH HOH . M 7 HOH A 168 668 26 HOH HOH . M 7 HOH A 169 669 35 HOH HOH . M 7 HOH A 170 670 241 HOH HOH . M 7 HOH A 171 671 6 HOH HOH . M 7 HOH A 172 672 13 HOH HOH . M 7 HOH A 173 673 138 HOH HOH . M 7 HOH A 174 674 154 HOH HOH . M 7 HOH A 175 675 41 HOH HOH . M 7 HOH A 176 676 252 HOH HOH . M 7 HOH A 177 677 244 HOH HOH . M 7 HOH A 178 678 38 HOH HOH . M 7 HOH A 179 679 182 HOH HOH . M 7 HOH A 180 680 5 HOH HOH . M 7 HOH A 181 681 211 HOH HOH . M 7 HOH A 182 682 29 HOH HOH . M 7 HOH A 183 683 146 HOH HOH . M 7 HOH A 184 684 24 HOH HOH . M 7 HOH A 185 685 99 HOH HOH . M 7 HOH A 186 686 163 HOH HOH . M 7 HOH A 187 687 10 HOH HOH . M 7 HOH A 188 688 162 HOH HOH . M 7 HOH A 189 689 195 HOH HOH . M 7 HOH A 190 690 223 HOH HOH . M 7 HOH A 191 691 83 HOH HOH . M 7 HOH A 192 692 183 HOH HOH . M 7 HOH A 193 693 43 HOH HOH . M 7 HOH A 194 694 191 HOH HOH . M 7 HOH A 195 695 205 HOH HOH . M 7 HOH A 196 696 149 HOH HOH . M 7 HOH A 197 697 261 HOH HOH . M 7 HOH A 198 698 36 HOH HOH . M 7 HOH A 199 699 198 HOH HOH . M 7 HOH A 200 700 31 HOH HOH . M 7 HOH A 201 701 209 HOH HOH . M 7 HOH A 202 702 39 HOH HOH . M 7 HOH A 203 703 215 HOH HOH . M 7 HOH A 204 704 199 HOH HOH . M 7 HOH A 205 705 166 HOH HOH . M 7 HOH A 206 706 148 HOH HOH . M 7 HOH A 207 707 14 HOH HOH . M 7 HOH A 208 708 30 HOH HOH . M 7 HOH A 209 709 127 HOH HOH . M 7 HOH A 210 710 187 HOH HOH . M 7 HOH A 211 711 221 HOH HOH . M 7 HOH A 212 712 251 HOH HOH . M 7 HOH A 213 713 196 HOH HOH . M 7 HOH A 214 714 175 HOH HOH . M 7 HOH A 215 715 253 HOH HOH . M 7 HOH A 216 716 260 HOH HOH . M 7 HOH A 217 717 193 HOH HOH . M 7 HOH A 218 718 210 HOH HOH . M 7 HOH A 219 719 243 HOH HOH . M 7 HOH A 220 720 135 HOH HOH . M 7 HOH A 221 721 145 HOH HOH . M 7 HOH A 222 722 203 HOH HOH . N 7 HOH S 1 701 98 HOH HOH . N 7 HOH S 2 702 1 HOH HOH . N 7 HOH S 3 703 96 HOH HOH . N 7 HOH S 4 704 180 HOH HOH . N 7 HOH S 5 705 139 HOH HOH . N 7 HOH S 6 706 115 HOH HOH . N 7 HOH S 7 707 218 HOH HOH . N 7 HOH S 8 708 3 HOH HOH . N 7 HOH S 9 709 242 HOH HOH . N 7 HOH S 10 710 213 HOH HOH . N 7 HOH S 11 711 222 HOH HOH . N 7 HOH S 12 712 188 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 3 -44.767 24.958 -3.345 1 78.16 ? C1 GOL 405 A 1 HETATM 2 O O1 GOL . . . G 3 -44.855 23.847 -4.192 1 77.79 ? O1 GOL 405 A 1 HETATM 3 C C2 GOL . . . G 3 -44.706 26.227 -4.181 1 79.44 ? C2 GOL 405 A 1 HETATM 4 O O2 GOL . . . G 3 -45.999 26.782 -4.267 1 82.85 ? O2 GOL 405 A 1 HETATM 5 C C3 GOL . . . G 3 -43.711 27.196 -3.541 1 81.92 ? C3 GOL 405 A 1 HETATM 6 O O3 GOL . . . G 3 -43.539 28.348 -4.339 1 83.39 ? O3 GOL 405 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #