data_6HLL # _model_server_result.job_id CpntlDlnxBsnF72NudZ5SA _model_server_result.datetime_utc '2025-01-09 06:11:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hll # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 6HLL # _exptl.entry_id 6HLL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 296.407 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{S},3~{S})-~{N}-[(2-methoxyphenyl)methyl]-2-phenyl-piperidin-3-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HLL _cell.length_a 61.996 _cell.length_b 122.733 _cell.length_c 286.494 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HLL _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 105 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 105 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 180 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 180 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.034 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C19 H24 N2 O' _chem_comp.formula_weight 296.407 _chem_comp.id GBK _chem_comp.mon_nstd_flag . _chem_comp.name (2~{S},3~{S})-~{N}-[(2-methoxyphenyl)methyl]-2-phenyl-piperidin-3-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C11 GBK sing 83 n n C12 N15 GBK sing 84 n n C11 C10 GBK sing 85 n n N15 C13 GBK sing 86 n n C10 C09 GBK sing 87 n n C13 C09 GBK sing 88 n n C13 C17 GBK sing 89 n n C09 N14 GBK sing 90 n n C17 C22 GBK doub 91 n y C17 C18 GBK sing 92 n y N14 C08 GBK sing 93 n n C22 C21 GBK sing 94 n y C18 C19 GBK doub 95 n y C08 C07 GBK sing 96 n n C21 C20 GBK doub 97 n y C19 C20 GBK sing 98 n y C07 C06 GBK doub 99 n y C07 C02 GBK sing 100 n y O16 C02 GBK sing 101 n n O16 C01 GBK sing 102 n n C06 C05 GBK sing 103 n y C02 C03 GBK doub 104 n y C05 C04 GBK doub 105 n y C03 C04 GBK sing 106 n y C10 H1 GBK sing 107 n n C10 H2 GBK sing 108 n n C13 H3 GBK sing 109 n n C20 H4 GBK sing 110 n n C21 H5 GBK sing 111 n n C22 H6 GBK sing 112 n n C01 H7 GBK sing 113 n n C01 H8 GBK sing 114 n n C01 H9 GBK sing 115 n n C03 H10 GBK sing 116 n n C04 H11 GBK sing 117 n n C05 H12 GBK sing 118 n n C06 H13 GBK sing 119 n n C08 H14 GBK sing 120 n n C08 H15 GBK sing 121 n n C09 H16 GBK sing 122 n n C11 H17 GBK sing 123 n n C11 H18 GBK sing 124 n n C12 H19 GBK sing 125 n n C12 H20 GBK sing 126 n n N14 H21 GBK sing 127 n n N15 H23 GBK sing 128 n n C18 H25 GBK sing 129 n n C19 H26 GBK sing 130 n n # _atom_sites.entry_id 6HLL _atom_sites.fract_transf_matrix[1][1] 0.01613 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id GBK _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1501 _pdbx_nonpoly_scheme.auth_seq_num 1501 _pdbx_nonpoly_scheme.pdb_mon_id GBK _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 GBK . . . B 2 4.628 18.565 -57.102 1 77.01 ? C10 GBK 1501 A 1 HETATM 2 C C13 GBK . . . B 2 2.999 20.442 -56.777 1 84.25 ? C13 GBK 1501 A 1 HETATM 3 C C17 GBK . . . B 2 2.35 21.295 -55.683 1 90.87 ? C17 GBK 1501 A 1 HETATM 4 C C20 GBK . . . B 2 1.196 22.845 -53.697 1 86.33 ? C20 GBK 1501 A 1 HETATM 5 C C21 GBK . . . B 2 0.494 21.779 -54.237 1 88.1 ? C21 GBK 1501 A 1 HETATM 6 C C22 GBK . . . B 2 1.071 21.002 -55.229 1 93.75 ? C22 GBK 1501 A 1 HETATM 7 C C01 GBK . . . B 2 6.742 16.805 -51.986 1 89.59 ? C01 GBK 1501 A 1 HETATM 8 C C02 GBK . . . B 2 4.629 17.73 -52.444 1 90.76 ? C02 GBK 1501 A 1 HETATM 9 C C03 GBK . . . B 2 4.626 18.251 -51.162 1 98.6 ? C03 GBK 1501 A 1 HETATM 10 C C04 GBK . . . B 2 3.57 19.041 -50.735 1 100.74 ? C04 GBK 1501 A 1 HETATM 11 C C05 GBK . . . B 2 2.509 19.311 -51.584 1 98.55 ? C05 GBK 1501 A 1 HETATM 12 C C06 GBK . . . B 2 2.516 18.788 -52.864 1 98.02 ? C06 GBK 1501 A 1 HETATM 13 C C07 GBK . . . B 2 3.57 17.997 -53.289 1 92.26 ? C07 GBK 1501 A 1 HETATM 14 C C08 GBK . . . B 2 3.55 17.436 -54.7 1 87.66 ? C08 GBK 1501 A 1 HETATM 15 C C09 GBK . . . B 2 3.782 19.332 -56.097 1 85.89 ? C09 GBK 1501 A 1 HETATM 16 C C11 GBK . . . B 2 4.062 18.686 -58.518 1 75.89 ? C11 GBK 1501 A 1 HETATM 17 C C12 GBK . . . B 2 2.518 18.828 -58.536 1 72.21 ? C12 GBK 1501 A 1 HETATM 18 N N14 GBK . . . B 2 2.833 18.409 -55.487 1 88.24 ? N14 GBK 1501 A 1 HETATM 19 N N15 GBK . . . B 2 1.981 19.864 -57.643 1 68.88 ? N15 GBK 1501 A 1 HETATM 20 O O16 GBK . . . B 2 5.686 16.932 -52.892 1 86.66 ? O16 GBK 1501 A 1 HETATM 21 C C18 GBK . . . B 2 3.052 22.36 -55.14 1 89.56 ? C18 GBK 1501 A 1 HETATM 22 C C19 GBK . . . B 2 2.475 23.135 -54.148 1 89.79 ? C19 GBK 1501 A 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #