data_6HLO
#
_model_server_result.job_id            vhPQk3BEeHHN5me_9aGqow 
_model_server_result.datetime_utc      '2024-11-05 06:54:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hlo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":1521}' 
#
_entry.id    6HLO 
#
_exptl.entry_id    6HLO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          5 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6HLO 
_cell.length_a            62.189 
_cell.length_b            76.45 
_cell.length_c            167.124 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HLO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 U N N 
? 5 V N N 
? 5 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 105 A CYS 105 1_555 A SG CYS 180 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
covale ? covale1 A C ARG 506 A ARG 321 1_555 A N YCM 507 A YCM 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C YCM 507 A YCM 322 1_555 A N CYS 508 A CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 A C ASP 229 A ASP 1220 1_555 A N YCM 230 A YCM 1221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 A C YCM 230 A YCM 1221 1_555 A N SER 231 A SER 1222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 371 n n 
C10 C9 OLC doub 372 n n 
C10 C11 OLC sing 373 n n 
C9 C8 OLC sing 374 n n 
C17 C16 OLC sing 375 z n 
C11 C12 OLC sing 376 n n 
C8 C7 OLC sing 377 n n 
C24 C22 OLC sing 378 n n 
C24 O25 OLC sing 379 n n 
C16 C15 OLC sing 380 n n 
C12 C13 OLC sing 381 n n 
C7 C6 OLC sing 382 n n 
C15 C14 OLC sing 383 n n 
C13 C14 OLC sing 384 n n 
C6 C5 OLC sing 385 n n 
C5 C4 OLC sing 386 n n 
C4 C3 OLC sing 387 n n 
C3 C2 OLC sing 388 n n 
C2 C1 OLC sing 389 n n 
C21 C22 OLC sing 390 n n 
C21 O20 OLC sing 391 n n 
C1 O19 OLC doub 392 n n 
C1 O20 OLC sing 393 n n 
C22 O23 OLC sing 394 n n 
C18 H18 OLC sing 395 n n 
C18 H18A OLC sing 396 n n 
C18 H18B OLC sing 397 n n 
C10 H10 OLC sing 398 n n 
C9 H9 OLC sing 399 n n 
C17 H17 OLC sing 400 n n 
C17 H17A OLC sing 401 n n 
C11 H11 OLC sing 402 n n 
C11 H11A OLC sing 403 n n 
C8 H8 OLC sing 404 n n 
C8 H8A OLC sing 405 n n 
C24 H24 OLC sing 406 n n 
C24 H24A OLC sing 407 n n 
C16 H16 OLC sing 408 n n 
C16 H16A OLC sing 409 n n 
C12 H12 OLC sing 410 n n 
C12 H12A OLC sing 411 n n 
C7 H7 OLC sing 412 n n 
C7 H7A OLC sing 413 n n 
C15 H15 OLC sing 414 n n 
C15 H15A OLC sing 415 n n 
C13 H13 OLC sing 416 n n 
C13 H13A OLC sing 417 n n 
C6 H6 OLC sing 418 n n 
C6 H6A OLC sing 419 n n 
C14 H14 OLC sing 420 n n 
C14 H14A OLC sing 421 n n 
C5 H5 OLC sing 422 n n 
C5 H5A OLC sing 423 n n 
C4 H4 OLC sing 424 n n 
C4 H4A OLC sing 425 n n 
C3 H3 OLC sing 426 n n 
C3 H3A OLC sing 427 n n 
C2 H2 OLC sing 428 n n 
C2 H2A OLC sing 429 n n 
C21 H21 OLC sing 430 n n 
C21 H21A OLC sing 431 n n 
C22 H22 OLC sing 432 n n 
O25 HO25 OLC sing 433 n n 
O23 HO23 OLC sing 434 n n 
#
_atom_sites.entry_id                     6HLO 
_atom_sites.fract_transf_matrix[1][1]    0.01608 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01308 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005984 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GBQ A 1 1501 1501 GBQ LIG . 
C 3 CIT A 1 1502 1601 CIT CIT . 
D 4 OLA A 1 1503 1701 OLA OLA . 
E 4 OLA A 1 1504 1702 OLA OLA . 
F 4 OLA A 1 1505 1703 OLA OLA . 
G 4 OLA A 1 1506 1704 OLA OLA . 
H 4 OLA A 1 1507 1705 OLA OLA . 
I 4 OLA A 1 1508 1706 OLA OLA . 
J 4 OLA A 1 1509 1707 OLA OLA . 
K 4 OLA A 1 1510 1708 OLA OLA . 
L 4 OLA A 1 1511 1709 OLA OLA . 
M 4 OLA A 1 1512 1710 OLA OLA . 
N 4 OLA A 1 1513 1711 OLA OLA . 
O 4 OLA A 1 1514 1712 OLA OLA . 
P 4 OLA A 1 1515 1713 OLA OLA . 
Q 4 OLA A 1 1516 1714 OLA OLA . 
R 4 OLA A 1 1517 1715 OLA OLA . 
S 4 OLA A 1 1518 1716 OLA OLA . 
T 4 OLA A 1 1519 1717 OLA OLA . 
U 5 OLC A 1 1520 1718 OLC OLC . 
V 5 OLC A 1 1521 1719 OLC OLC . 
W 5 OLC A 1 1522 1720 OLC OLC . 
X 6 HOH A 1 1601 1812 HOH HOH . 
X 6 HOH A 2 1602 1814 HOH HOH . 
X 6 HOH A 3 1603 1855 HOH HOH . 
X 6 HOH A 4 1604 1807 HOH HOH . 
X 6 HOH A 5 1605 1873 HOH HOH . 
X 6 HOH A 6 1606 1805 HOH HOH . 
X 6 HOH A 7 1607 1832 HOH HOH . 
X 6 HOH A 8 1608 1850 HOH HOH . 
X 6 HOH A 9 1609 1851 HOH HOH . 
X 6 HOH A 10 1610 1872 HOH HOH . 
X 6 HOH A 11 1611 1835 HOH HOH . 
X 6 HOH A 12 1612 1874 HOH HOH . 
X 6 HOH A 13 1613 1849 HOH HOH . 
X 6 HOH A 14 1614 1811 HOH HOH . 
X 6 HOH A 15 1615 1823 HOH HOH . 
X 6 HOH A 16 1616 1828 HOH HOH . 
X 6 HOH A 17 1617 1820 HOH HOH . 
X 6 HOH A 18 1618 1825 HOH HOH . 
X 6 HOH A 19 1619 1871 HOH HOH . 
X 6 HOH A 20 1620 1831 HOH HOH . 
X 6 HOH A 21 1621 1809 HOH HOH . 
X 6 HOH A 22 1622 1808 HOH HOH . 
X 6 HOH A 23 1623 1862 HOH HOH . 
X 6 HOH A 24 1624 1852 HOH HOH . 
X 6 HOH A 25 1625 1815 HOH HOH . 
X 6 HOH A 26 1626 1821 HOH HOH . 
X 6 HOH A 27 1627 1816 HOH HOH . 
X 6 HOH A 28 1628 1819 HOH HOH . 
X 6 HOH A 29 1629 1854 HOH HOH . 
X 6 HOH A 30 1630 1802 HOH HOH . 
X 6 HOH A 31 1631 1839 HOH HOH . 
X 6 HOH A 32 1632 1801 HOH HOH . 
X 6 HOH A 33 1633 1842 HOH HOH . 
X 6 HOH A 34 1634 1810 HOH HOH . 
X 6 HOH A 35 1635 1826 HOH HOH . 
X 6 HOH A 36 1636 1840 HOH HOH . 
X 6 HOH A 37 1637 1806 HOH HOH . 
X 6 HOH A 38 1638 1827 HOH HOH . 
X 6 HOH A 39 1639 1824 HOH HOH . 
X 6 HOH A 40 1640 1865 HOH HOH . 
X 6 HOH A 41 1641 1834 HOH HOH . 
X 6 HOH A 42 1642 1803 HOH HOH . 
X 6 HOH A 43 1643 1844 HOH HOH . 
X 6 HOH A 44 1644 1836 HOH HOH . 
X 6 HOH A 45 1645 1818 HOH HOH . 
X 6 HOH A 46 1646 1833 HOH HOH . 
X 6 HOH A 47 1647 1845 HOH HOH . 
X 6 HOH A 48 1648 1829 HOH HOH . 
X 6 HOH A 49 1649 1853 HOH HOH . 
X 6 HOH A 50 1650 1813 HOH HOH . 
X 6 HOH A 51 1651 1830 HOH HOH . 
X 6 HOH A 52 1652 1843 HOH HOH . 
X 6 HOH A 53 1653 1841 HOH HOH . 
X 6 HOH A 54 1654 1860 HOH HOH . 
X 6 HOH A 55 1655 1838 HOH HOH . 
X 6 HOH A 56 1656 1846 HOH HOH . 
X 6 HOH A 57 1657 1866 HOH HOH . 
X 6 HOH A 58 1658 1837 HOH HOH . 
X 6 HOH A 59 1659 1870 HOH HOH . 
X 6 HOH A 60 1660 1868 HOH HOH . 
X 6 HOH A 61 1661 1861 HOH HOH . 
X 6 HOH A 62 1662 1847 HOH HOH . 
X 6 HOH A 63 1663 1804 HOH HOH . 
X 6 HOH A 64 1664 1857 HOH HOH . 
X 6 HOH A 65 1665 1817 HOH HOH . 
X 6 HOH A 66 1666 1867 HOH HOH . 
X 6 HOH A 67 1667 1864 HOH HOH . 
X 6 HOH A 68 1668 1822 HOH HOH . 
X 6 HOH A 69 1669 1856 HOH HOH . 
X 6 HOH A 70 1670 1859 HOH HOH . 
X 6 HOH A 71 1671 1848 HOH HOH . 
X 6 HOH A 72 1672 1869 HOH HOH . 
X 6 HOH A 73 1673 1863 HOH HOH . 
X 6 HOH A 74 1674 1858 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C24 OLC . . . V 5 1.191 17.143 31.217 1 127.82 ? C24 OLC 1521 A 1 
HETATM 2 C C3 OLC . . . V 5 2.706 16.356 36.602 1 90.28 ? C3 OLC 1521 A 1 
HETATM 3 C C2 OLC . . . V 5 3.224 15.302 35.633 1 94.86 ? C2 OLC 1521 A 1 
HETATM 4 C C21 OLC . . . V 5 3.249 16.832 32.599 1 126.11 ? C21 OLC 1521 A 1 
HETATM 5 C C1 OLC . . . V 5 2.399 15.315 34.366 1 107.03 ? C1 OLC 1521 A 1 
HETATM 6 C C22 OLC . . . V 5 2.653 16.715 31.203 1 128.83 ? C22 OLC 1521 A 1 
HETATM 7 O O19 OLC . . . V 5 1.858 14.299 33.965 1 111.3 ? O19 OLC 1521 A 1 
HETATM 8 O O25 OLC . . . V 5 0.572 16.729 29.994 1 130.1 ? O25 OLC 1521 A 1 
HETATM 9 O O23 OLC . . . V 5 3.397 17.554 30.315 1 136.12 ? O23 OLC 1521 A 1 
HETATM 10 O O20 OLC . . . V 5 2.265 16.533 33.586 1 118.35 ? O20 OLC 1521 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#