data_6HM3
#
_model_server_result.job_id            DmLQaZRla2Z1VugVtgF9Xw 
_model_server_result.datetime_utc      '2024-11-04 23:03:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hm3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    6HM3 
#
_exptl.entry_id    6HM3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6HM3 
_cell.length_a            39.4 
_cell.length_b            59.17 
_cell.length_c            120.43 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HM3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ALA 9 B ALA 635 1_555 B N TPO 10 B TPO 636 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 B C TPO 10 B TPO 636 1_555 B N PRO 11 B PRO 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale3 B C ASP 23 B ASP 649 1_555 B N TPO 24 B TPO 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 B C TPO 24 B TPO 650 1_555 B N PRO 25 B PRO 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
metalc ? metalc1 A O ALA 49 A ALA 49 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? 
metalc ? metalc2 E CA CA . A CA 203 1_555 G O HOH . A HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? 
metalc ? metalc3 F CA CA . A CA 204 1_555 G O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.969 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6HM3 
_atom_sites.fract_transf_matrix[1][1]    0.025381 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0169 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008304 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL A 1 201 1 GOL GOL . 
D 3 GOL A 1 202 1 GOL GOL . 
E 4 CA A 1 203 1 CA CA . 
F 4 CA A 1 204 1 CA CA . 
G 5 HOH A 1 301 157 HOH HOH . 
G 5 HOH A 2 302 131 HOH HOH . 
G 5 HOH A 3 303 88 HOH HOH . 
G 5 HOH A 4 304 77 HOH HOH . 
G 5 HOH A 5 305 168 HOH HOH . 
G 5 HOH A 6 306 18 HOH HOH . 
G 5 HOH A 7 307 96 HOH HOH . 
G 5 HOH A 8 308 181 HOH HOH . 
G 5 HOH A 9 309 35 HOH HOH . 
G 5 HOH A 10 310 55 HOH HOH . 
G 5 HOH A 11 311 169 HOH HOH . 
G 5 HOH A 12 312 133 HOH HOH . 
G 5 HOH A 13 313 138 HOH HOH . 
G 5 HOH A 14 314 187 HOH HOH . 
G 5 HOH A 15 315 84 HOH HOH . 
G 5 HOH A 16 316 21 HOH HOH . 
G 5 HOH A 17 317 58 HOH HOH . 
G 5 HOH A 18 318 52 HOH HOH . 
G 5 HOH A 19 319 82 HOH HOH . 
G 5 HOH A 20 320 86 HOH HOH . 
G 5 HOH A 21 321 99 HOH HOH . 
G 5 HOH A 22 322 137 HOH HOH . 
G 5 HOH A 23 323 47 HOH HOH . 
G 5 HOH A 24 324 66 HOH HOH . 
G 5 HOH A 25 325 105 HOH HOH . 
G 5 HOH A 26 326 10 HOH HOH . 
G 5 HOH A 27 327 2 HOH HOH . 
G 5 HOH A 28 328 11 HOH HOH . 
G 5 HOH A 29 329 158 HOH HOH . 
G 5 HOH A 30 330 59 HOH HOH . 
G 5 HOH A 31 331 49 HOH HOH . 
G 5 HOH A 32 332 56 HOH HOH . 
G 5 HOH A 33 333 41 HOH HOH . 
G 5 HOH A 34 334 64 HOH HOH . 
G 5 HOH A 35 335 179 HOH HOH . 
G 5 HOH A 36 336 9 HOH HOH . 
G 5 HOH A 37 337 28 HOH HOH . 
G 5 HOH A 38 338 22 HOH HOH . 
G 5 HOH A 39 339 30 HOH HOH . 
G 5 HOH A 40 340 186 HOH HOH . 
G 5 HOH A 41 341 100 HOH HOH . 
G 5 HOH A 42 342 34 HOH HOH . 
G 5 HOH A 43 343 146 HOH HOH . 
G 5 HOH A 44 344 17 HOH HOH . 
G 5 HOH A 45 345 118 HOH HOH . 
G 5 HOH A 46 346 54 HOH HOH . 
G 5 HOH A 47 347 70 HOH HOH . 
G 5 HOH A 48 348 71 HOH HOH . 
G 5 HOH A 49 349 110 HOH HOH . 
G 5 HOH A 50 350 16 HOH HOH . 
G 5 HOH A 51 351 132 HOH HOH . 
G 5 HOH A 52 352 44 HOH HOH . 
G 5 HOH A 53 353 33 HOH HOH . 
G 5 HOH A 54 354 90 HOH HOH . 
G 5 HOH A 55 355 31 HOH HOH . 
G 5 HOH A 56 356 43 HOH HOH . 
G 5 HOH A 57 357 12 HOH HOH . 
G 5 HOH A 58 358 211 HOH HOH . 
G 5 HOH A 59 359 109 HOH HOH . 
G 5 HOH A 60 360 57 HOH HOH . 
G 5 HOH A 61 361 8 HOH HOH . 
G 5 HOH A 62 362 23 HOH HOH . 
G 5 HOH A 63 363 32 HOH HOH . 
G 5 HOH A 64 364 42 HOH HOH . 
G 5 HOH A 65 365 53 HOH HOH . 
G 5 HOH A 66 366 192 HOH HOH . 
G 5 HOH A 67 367 29 HOH HOH . 
G 5 HOH A 68 368 19 HOH HOH . 
G 5 HOH A 69 369 170 HOH HOH . 
G 5 HOH A 70 370 126 HOH HOH . 
G 5 HOH A 71 371 206 HOH HOH . 
G 5 HOH A 72 372 98 HOH HOH . 
G 5 HOH A 73 373 26 HOH HOH . 
G 5 HOH A 74 374 40 HOH HOH . 
G 5 HOH A 75 375 39 HOH HOH . 
G 5 HOH A 76 376 136 HOH HOH . 
G 5 HOH A 77 377 180 HOH HOH . 
G 5 HOH A 78 378 113 HOH HOH . 
G 5 HOH A 79 379 161 HOH HOH . 
G 5 HOH A 80 380 167 HOH HOH . 
G 5 HOH A 81 381 80 HOH HOH . 
G 5 HOH A 82 382 72 HOH HOH . 
G 5 HOH A 83 383 129 HOH HOH . 
G 5 HOH A 84 384 178 HOH HOH . 
G 5 HOH A 85 385 61 HOH HOH . 
G 5 HOH A 86 386 149 HOH HOH . 
G 5 HOH A 87 387 25 HOH HOH . 
G 5 HOH A 88 388 124 HOH HOH . 
G 5 HOH A 89 389 13 HOH HOH . 
G 5 HOH A 90 390 135 HOH HOH . 
G 5 HOH A 91 391 101 HOH HOH . 
G 5 HOH A 92 392 92 HOH HOH . 
G 5 HOH A 93 393 68 HOH HOH . 
G 5 HOH A 94 394 65 HOH HOH . 
G 5 HOH A 95 395 115 HOH HOH . 
G 5 HOH A 96 396 203 HOH HOH . 
G 5 HOH A 97 397 27 HOH HOH . 
G 5 HOH A 98 398 50 HOH HOH . 
G 5 HOH A 99 399 183 HOH HOH . 
G 5 HOH A 100 400 1 HOH HOH . 
G 5 HOH A 101 401 160 HOH HOH . 
G 5 HOH A 102 402 76 HOH HOH . 
G 5 HOH A 103 403 81 HOH HOH . 
G 5 HOH A 104 404 151 HOH HOH . 
G 5 HOH A 105 405 83 HOH HOH . 
G 5 HOH A 106 406 119 HOH HOH . 
G 5 HOH A 107 407 46 HOH HOH . 
G 5 HOH A 108 408 7 HOH HOH . 
G 5 HOH A 109 409 221 HOH HOH . 
G 5 HOH A 110 410 108 HOH HOH . 
G 5 HOH A 111 411 24 HOH HOH . 
G 5 HOH A 112 412 91 HOH HOH . 
G 5 HOH A 113 413 20 HOH HOH . 
G 5 HOH A 114 414 217 HOH HOH . 
G 5 HOH A 115 415 51 HOH HOH . 
G 5 HOH A 116 416 214 HOH HOH . 
G 5 HOH A 117 417 156 HOH HOH . 
G 5 HOH A 118 418 213 HOH HOH . 
G 5 HOH A 119 419 171 HOH HOH . 
G 5 HOH A 120 420 60 HOH HOH . 
G 5 HOH A 121 421 212 HOH HOH . 
G 5 HOH A 122 422 173 HOH HOH . 
G 5 HOH A 123 423 103 HOH HOH . 
G 5 HOH A 124 424 97 HOH HOH . 
G 5 HOH A 125 425 210 HOH HOH . 
G 5 HOH A 126 426 215 HOH HOH . 
G 5 HOH A 127 427 89 HOH HOH . 
G 5 HOH A 128 428 120 HOH HOH . 
G 5 HOH A 129 429 223 HOH HOH . 
G 5 HOH A 130 430 182 HOH HOH . 
G 5 HOH A 131 431 188 HOH HOH . 
G 5 HOH A 132 432 216 HOH HOH . 
G 5 HOH A 133 433 38 HOH HOH . 
G 5 HOH A 134 434 152 HOH HOH . 
G 5 HOH A 135 435 150 HOH HOH . 
G 5 HOH A 136 436 191 HOH HOH . 
G 5 HOH A 137 437 3 HOH HOH . 
G 5 HOH A 138 438 199 HOH HOH . 
G 5 HOH A 139 439 196 HOH HOH . 
G 5 HOH A 140 440 94 HOH HOH . 
G 5 HOH A 141 441 193 HOH HOH . 
G 5 HOH A 142 442 154 HOH HOH . 
G 5 HOH A 143 443 87 HOH HOH . 
G 5 HOH A 144 444 153 HOH HOH . 
G 5 HOH A 145 445 122 HOH HOH . 
G 5 HOH A 146 446 141 HOH HOH . 
G 5 HOH A 147 447 79 HOH HOH . 
G 5 HOH A 148 448 121 HOH HOH . 
G 5 HOH A 149 449 95 HOH HOH . 
G 5 HOH A 150 450 14 HOH HOH . 
G 5 HOH A 151 451 145 HOH HOH . 
G 5 HOH A 152 452 104 HOH HOH . 
G 5 HOH A 153 453 117 HOH HOH . 
G 5 HOH A 154 454 198 HOH HOH . 
G 5 HOH A 155 455 48 HOH HOH . 
G 5 HOH A 156 456 205 HOH HOH . 
G 5 HOH A 157 457 222 HOH HOH . 
G 5 HOH A 158 458 201 HOH HOH . 
G 5 HOH A 159 459 142 HOH HOH . 
G 5 HOH A 160 460 176 HOH HOH . 
G 5 HOH A 161 461 134 HOH HOH . 
G 5 HOH A 162 462 143 HOH HOH . 
G 5 HOH A 163 463 162 HOH HOH . 
G 5 HOH A 164 464 67 HOH HOH . 
G 5 HOH A 165 465 194 HOH HOH . 
G 5 HOH A 166 466 224 HOH HOH . 
G 5 HOH A 167 467 209 HOH HOH . 
G 5 HOH A 168 468 185 HOH HOH . 
G 5 HOH A 169 469 204 HOH HOH . 
G 5 HOH A 170 470 130 HOH HOH . 
G 5 HOH A 171 471 164 HOH HOH . 
G 5 HOH A 172 472 139 HOH HOH . 
G 5 HOH A 173 473 202 HOH HOH . 
G 5 HOH A 174 474 166 HOH HOH . 
G 5 HOH A 175 475 144 HOH HOH . 
G 5 HOH A 176 476 220 HOH HOH . 
G 5 HOH A 177 477 140 HOH HOH . 
G 5 HOH A 178 478 225 HOH HOH . 
G 5 HOH A 179 479 114 HOH HOH . 
G 5 HOH A 180 480 200 HOH HOH . 
G 5 HOH A 181 481 127 HOH HOH . 
G 5 HOH A 182 482 45 HOH HOH . 
G 5 HOH A 183 483 175 HOH HOH . 
G 5 HOH A 184 484 165 HOH HOH . 
G 5 HOH A 185 485 174 HOH HOH . 
G 5 HOH A 186 486 207 HOH HOH . 
G 5 HOH A 187 487 190 HOH HOH . 
G 5 HOH A 188 488 163 HOH HOH . 
G 5 HOH A 189 489 15 HOH HOH . 
G 5 HOH A 190 490 172 HOH HOH . 
G 5 HOH A 191 491 177 HOH HOH . 
G 5 HOH A 192 492 75 HOH HOH . 
G 5 HOH A 193 493 106 HOH HOH . 
G 5 HOH A 194 494 189 HOH HOH . 
G 5 HOH A 195 495 148 HOH HOH . 
G 5 HOH A 196 496 74 HOH HOH . 
G 5 HOH A 197 497 128 HOH HOH . 
G 5 HOH A 198 498 184 HOH HOH . 
G 5 HOH A 199 499 147 HOH HOH . 
G 5 HOH A 200 500 208 HOH HOH . 
H 5 HOH B 1 701 37 HOH HOH . 
H 5 HOH B 2 702 155 HOH HOH . 
H 5 HOH B 3 703 102 HOH HOH . 
H 5 HOH B 4 704 112 HOH HOH . 
H 5 HOH B 5 705 123 HOH HOH . 
H 5 HOH B 6 706 5 HOH HOH . 
H 5 HOH B 7 707 69 HOH HOH . 
H 5 HOH B 8 708 62 HOH HOH . 
H 5 HOH B 9 709 36 HOH HOH . 
H 5 HOH B 10 710 4 HOH HOH . 
H 5 HOH B 11 711 63 HOH HOH . 
H 5 HOH B 12 712 93 HOH HOH . 
H 5 HOH B 13 713 159 HOH HOH . 
H 5 HOH B 14 714 116 HOH HOH . 
H 5 HOH B 15 715 111 HOH HOH . 
H 5 HOH B 16 716 85 HOH HOH . 
H 5 HOH B 17 717 107 HOH HOH . 
H 5 HOH B 18 718 125 HOH HOH . 
H 5 HOH B 19 719 197 HOH HOH . 
H 5 HOH B 20 720 195 HOH HOH . 
H 5 HOH B 21 721 218 HOH HOH . 
H 5 HOH B 22 722 78 HOH HOH . 
H 5 HOH B 23 723 6 HOH HOH . 
H 5 HOH B 24 724 219 HOH HOH . 
H 5 HOH B 25 725 73 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 1.406 1.443 1.428 1 37.45 ? C1 GOL 201 A 1 
HETATM 2 O O1 GOL . . . C 3 2.468 1.627 0.529 1 26.08 ? O1 GOL 201 A 1 
HETATM 3 C C2 GOL . . . C 3 1.826 0.392 2.452 1 38.57 ? C2 GOL 201 A 1 
HETATM 4 O O2 GOL . . . C 3 1.699 0.938 3.752 1 55.83 ? O2 GOL 201 A 1 
HETATM 5 C C3 GOL . . . C 3 0.953 -0.84 2.254 1 48.56 ? C3 GOL 201 A 1 
HETATM 6 O O3 GOL . . . C 3 1.089 -1.278 0.916 1 43.09 ? O3 GOL 201 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           249 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#