data_6HMJ # _model_server_result.job_id ehAZzGO4rCYlmHaZdvUBcg _model_server_result.datetime_utc '2025-03-05 02:49:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hmj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":400}' # _entry.id 6HMJ # _exptl.entry_id 6HMJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HMJ _cell.length_a 67.013 _cell.length_b 150.345 _cell.length_c 219.783 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HMJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,O,P 1 1 C,D,I,J,K,L,M,N,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 92 n n N1 C10 FMN doub 93 n n C2 O2 FMN doub 94 n n C2 N3 FMN sing 95 n n N3 C4 FMN sing 96 n n N3 HN3 FMN sing 97 n n C4 O4 FMN doub 98 n n C4 C4A FMN sing 99 n n C4A N5 FMN doub 100 n n C4A C10 FMN sing 101 n n N5 C5A FMN sing 102 n n C5A C6 FMN doub 103 n y C5A C9A FMN sing 104 n y C6 C7 FMN sing 105 n y C6 H6 FMN sing 106 n n C7 C7M FMN sing 107 n n C7 C8 FMN doub 108 n y C7M HM71 FMN sing 109 n n C7M HM72 FMN sing 110 n n C7M HM73 FMN sing 111 n n C8 C8M FMN sing 112 n n C8 C9 FMN sing 113 n y C8M HM81 FMN sing 114 n n C8M HM82 FMN sing 115 n n C8M HM83 FMN sing 116 n n C9 C9A FMN doub 117 n y C9 H9 FMN sing 118 n n C9A N10 FMN sing 119 n n N10 C10 FMN sing 120 n n N10 C1' FMN sing 121 n n C1' C2' FMN sing 122 n n C1' "H1'1" FMN sing 123 n n C1' "H1'2" FMN sing 124 n n C2' O2' FMN sing 125 n n C2' C3' FMN sing 126 n n C2' H2' FMN sing 127 n n O2' HO2' FMN sing 128 n n C3' O3' FMN sing 129 n n C3' C4' FMN sing 130 n n C3' H3' FMN sing 131 n n O3' HO3' FMN sing 132 n n C4' O4' FMN sing 133 n n C4' C5' FMN sing 134 n n C4' H4' FMN sing 135 n n O4' HO4' FMN sing 136 n n C5' O5' FMN sing 137 n n C5' "H5'1" FMN sing 138 n n C5' "H5'2" FMN sing 139 n n O5' P FMN sing 140 n n P O1P FMN doub 141 n n P O2P FMN sing 142 n n P O3P FMN sing 143 n n O2P HOP2 FMN sing 144 n n O3P HOP3 FMN sing 145 n n # _atom_sites.entry_id 6HMJ _atom_sites.fract_transf_matrix[1][1] 0.014922 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006651 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00455 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FMN A 1 400 400 FMN FMN . F 3 GOL A 1 401 401 GOL GOL . G 2 FMN B 1 400 400 FMN FMN . H 4 IMD B 1 401 401 IMD IMD . I 2 FMN C 1 400 400 FMN FMN . J 5 EDO C 1 401 401 EDO EDO . K 2 FMN D 1 401 400 FMN FMN . L 3 GOL D 1 402 401 GOL GOL . M 5 EDO D 1 403 402 EDO EDO . N 3 GOL D 1 404 501 GOL GOL . O 6 HOH A 1 501 21 HOH HOH . O 6 HOH A 2 502 84 HOH HOH . O 6 HOH A 3 503 80 HOH HOH . O 6 HOH A 4 504 88 HOH HOH . O 6 HOH A 5 505 9 HOH HOH . O 6 HOH A 6 506 16 HOH HOH . O 6 HOH A 7 507 23 HOH HOH . O 6 HOH A 8 508 156 HOH HOH . O 6 HOH A 9 509 13 HOH HOH . O 6 HOH A 10 510 4 HOH HOH . O 6 HOH A 11 511 11 HOH HOH . O 6 HOH A 12 512 104 HOH HOH . O 6 HOH A 13 513 7 HOH HOH . O 6 HOH A 14 514 14 HOH HOH . O 6 HOH A 15 515 6 HOH HOH . O 6 HOH A 16 516 15 HOH HOH . O 6 HOH A 17 517 19 HOH HOH . O 6 HOH A 18 518 5 HOH HOH . O 6 HOH A 19 519 17 HOH HOH . O 6 HOH A 20 520 169 HOH HOH . O 6 HOH A 21 521 164 HOH HOH . O 6 HOH A 22 522 101 HOH HOH . O 6 HOH A 23 523 137 HOH HOH . O 6 HOH A 24 524 18 HOH HOH . O 6 HOH A 25 525 133 HOH HOH . O 6 HOH A 26 526 153 HOH HOH . O 6 HOH A 27 527 78 HOH HOH . O 6 HOH A 28 528 3 HOH HOH . O 6 HOH A 29 529 10 HOH HOH . O 6 HOH A 30 530 20 HOH HOH . O 6 HOH A 31 531 1 HOH HOH . O 6 HOH A 32 532 149 HOH HOH . O 6 HOH A 33 533 166 HOH HOH . O 6 HOH A 34 534 109 HOH HOH . O 6 HOH A 35 535 157 HOH HOH . O 6 HOH A 36 536 12 HOH HOH . O 6 HOH A 37 537 170 HOH HOH . O 6 HOH A 38 538 151 HOH HOH . O 6 HOH A 39 539 106 HOH HOH . O 6 HOH A 40 540 141 HOH HOH . O 6 HOH A 41 541 100 HOH HOH . O 6 HOH A 42 542 22 HOH HOH . O 6 HOH A 43 543 2 HOH HOH . O 6 HOH A 44 544 171 HOH HOH . O 6 HOH A 45 545 142 HOH HOH . O 6 HOH A 46 546 94 HOH HOH . O 6 HOH A 47 547 168 HOH HOH . O 6 HOH A 48 548 8 HOH HOH . O 6 HOH A 49 549 134 HOH HOH . O 6 HOH A 50 550 96 HOH HOH . O 6 HOH A 51 551 155 HOH HOH . O 6 HOH A 52 552 145 HOH HOH . O 6 HOH A 53 553 159 HOH HOH . O 6 HOH A 54 554 165 HOH HOH . O 6 HOH A 55 555 82 HOH HOH . O 6 HOH A 56 556 147 HOH HOH . O 6 HOH A 57 557 125 HOH HOH . O 6 HOH A 58 558 98 HOH HOH . P 6 HOH B 1 501 107 HOH HOH . P 6 HOH B 2 502 32 HOH HOH . P 6 HOH B 3 503 35 HOH HOH . P 6 HOH B 4 504 30 HOH HOH . P 6 HOH B 5 505 34 HOH HOH . P 6 HOH B 6 506 27 HOH HOH . P 6 HOH B 7 507 37 HOH HOH . P 6 HOH B 8 508 115 HOH HOH . P 6 HOH B 9 509 158 HOH HOH . P 6 HOH B 10 510 28 HOH HOH . P 6 HOH B 11 511 33 HOH HOH . P 6 HOH B 12 512 162 HOH HOH . P 6 HOH B 13 513 114 HOH HOH . P 6 HOH B 14 514 29 HOH HOH . P 6 HOH B 15 515 132 HOH HOH . P 6 HOH B 16 516 167 HOH HOH . P 6 HOH B 17 517 26 HOH HOH . P 6 HOH B 18 518 120 HOH HOH . P 6 HOH B 19 519 124 HOH HOH . P 6 HOH B 20 520 110 HOH HOH . P 6 HOH B 21 521 121 HOH HOH . P 6 HOH B 22 522 31 HOH HOH . P 6 HOH B 23 523 131 HOH HOH . P 6 HOH B 24 524 77 HOH HOH . P 6 HOH B 25 525 118 HOH HOH . Q 6 HOH C 1 501 48 HOH HOH . Q 6 HOH C 2 502 42 HOH HOH . Q 6 HOH C 3 503 117 HOH HOH . Q 6 HOH C 4 504 86 HOH HOH . Q 6 HOH C 5 505 81 HOH HOH . Q 6 HOH C 6 506 135 HOH HOH . Q 6 HOH C 7 507 44 HOH HOH . Q 6 HOH C 8 508 51 HOH HOH . Q 6 HOH C 9 509 139 HOH HOH . Q 6 HOH C 10 510 123 HOH HOH . Q 6 HOH C 11 511 40 HOH HOH . Q 6 HOH C 12 512 136 HOH HOH . Q 6 HOH C 13 513 46 HOH HOH . Q 6 HOH C 14 514 45 HOH HOH . Q 6 HOH C 15 515 154 HOH HOH . Q 6 HOH C 16 516 116 HOH HOH . Q 6 HOH C 17 517 49 HOH HOH . Q 6 HOH C 18 518 39 HOH HOH . Q 6 HOH C 19 519 138 HOH HOH . Q 6 HOH C 20 520 41 HOH HOH . Q 6 HOH C 21 521 43 HOH HOH . Q 6 HOH C 22 522 102 HOH HOH . Q 6 HOH C 23 523 129 HOH HOH . Q 6 HOH C 24 524 143 HOH HOH . Q 6 HOH C 25 525 50 HOH HOH . Q 6 HOH C 26 526 130 HOH HOH . Q 6 HOH C 27 527 111 HOH HOH . Q 6 HOH C 28 528 126 HOH HOH . Q 6 HOH C 29 529 146 HOH HOH . Q 6 HOH C 30 530 161 HOH HOH . Q 6 HOH C 31 531 128 HOH HOH . Q 6 HOH C 32 532 140 HOH HOH . Q 6 HOH C 33 533 99 HOH HOH . Q 6 HOH C 34 534 160 HOH HOH . Q 6 HOH C 35 535 89 HOH HOH . Q 6 HOH C 36 536 119 HOH HOH . Q 6 HOH C 37 537 47 HOH HOH . R 6 HOH D 1 501 68 HOH HOH . R 6 HOH D 2 502 67 HOH HOH . R 6 HOH D 3 503 73 HOH HOH . R 6 HOH D 4 504 75 HOH HOH . R 6 HOH D 5 505 61 HOH HOH . R 6 HOH D 6 506 56 HOH HOH . R 6 HOH D 7 507 79 HOH HOH . R 6 HOH D 8 508 152 HOH HOH . R 6 HOH D 9 509 91 HOH HOH . R 6 HOH D 10 510 63 HOH HOH . R 6 HOH D 11 511 144 HOH HOH . R 6 HOH D 12 512 127 HOH HOH . R 6 HOH D 13 513 64 HOH HOH . R 6 HOH D 14 514 55 HOH HOH . R 6 HOH D 15 515 65 HOH HOH . R 6 HOH D 16 516 57 HOH HOH . R 6 HOH D 17 517 150 HOH HOH . R 6 HOH D 18 518 113 HOH HOH . R 6 HOH D 19 519 92 HOH HOH . R 6 HOH D 20 520 71 HOH HOH . R 6 HOH D 21 521 58 HOH HOH . R 6 HOH D 22 522 108 HOH HOH . R 6 HOH D 23 523 163 HOH HOH . R 6 HOH D 24 524 148 HOH HOH . R 6 HOH D 25 525 66 HOH HOH . R 6 HOH D 26 526 59 HOH HOH . R 6 HOH D 27 527 60 HOH HOH . R 6 HOH D 28 528 70 HOH HOH . R 6 HOH D 29 529 69 HOH HOH . R 6 HOH D 30 530 53 HOH HOH . R 6 HOH D 31 531 97 HOH HOH . R 6 HOH D 32 532 72 HOH HOH . R 6 HOH D 33 533 62 HOH HOH . R 6 HOH D 34 534 112 HOH HOH . R 6 HOH D 35 535 54 HOH HOH . R 6 HOH D 36 536 87 HOH HOH . R 6 HOH D 37 537 103 HOH HOH . R 6 HOH D 38 538 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . G 2 -16.149 74.807 179.978 1 87.17 ? N1 FMN 400 B 1 HETATM 2 C C2 FMN . . . G 2 -16.525 74.786 178.676 1 87.13 ? C2 FMN 400 B 1 HETATM 3 O O2 FMN . . . G 2 -16.196 73.802 177.979 1 86.72 ? O2 FMN 400 B 1 HETATM 4 N N3 FMN . . . G 2 -17.235 75.777 178.109 1 87.61 ? N3 FMN 400 B 1 HETATM 5 C C4 FMN . . . G 2 -17.617 76.858 178.799 1 86.99 ? C4 FMN 400 B 1 HETATM 6 O O4 FMN . . . G 2 -18.277 77.763 178.247 1 86.42 ? O4 FMN 400 B 1 HETATM 7 C C4A FMN . . . G 2 -17.247 76.957 180.23 1 87.12 ? C4A FMN 400 B 1 HETATM 8 N N5 FMN . . . G 2 -17.599 78.014 180.989 1 86.59 ? N5 FMN 400 B 1 HETATM 9 C C5A FMN . . . G 2 -17.246 78.08 182.292 1 86.22 ? C5A FMN 400 B 1 HETATM 10 C C6 FMN . . . G 2 -17.631 79.191 183.034 1 85.42 ? C6 FMN 400 B 1 HETATM 11 C C7 FMN . . . G 2 -17.29 79.294 184.375 1 84.34 ? C7 FMN 400 B 1 HETATM 12 C C7M FMN . . . G 2 -17.716 80.505 185.161 1 83.2 ? C7M FMN 400 B 1 HETATM 13 C C8 FMN . . . G 2 -16.504 78.208 185.02 1 83.9 ? C8 FMN 400 B 1 HETATM 14 C C8M FMN . . . G 2 -16.117 78.29 186.472 1 82.24 ? C8M FMN 400 B 1 HETATM 15 C C9 FMN . . . G 2 -16.117 77.096 184.282 1 84.92 ? C9 FMN 400 B 1 HETATM 16 C C9A FMN . . . G 2 -16.457 76.984 182.933 1 86.08 ? C9A FMN 400 B 1 HETATM 17 N N10 FMN . . . G 2 -16.082 75.862 182.149 1 87.21 ? N10 FMN 400 B 1 HETATM 18 C C10 FMN . . . G 2 -16.468 75.835 180.794 1 87.37 ? C10 FMN 400 B 1 HETATM 19 C C1' FMN . . . G 2 -15.3 74.74 182.685 1 88.61 ? C1' FMN 400 B 1 HETATM 20 C C2' FMN . . . G 2 -16.199 73.639 183.24 1 90 ? C2' FMN 400 B 1 HETATM 21 O O2' FMN . . . G 2 -17.341 74.182 183.913 1 90.21 ? O2' FMN 400 B 1 HETATM 22 C C3' FMN . . . G 2 -15.424 72.742 184.203 1 91.04 ? C3' FMN 400 B 1 HETATM 23 O O3' FMN . . . G 2 -15.193 73.414 185.45 1 91.2 ? O3' FMN 400 B 1 HETATM 24 C C4' FMN . . . G 2 -14.091 72.31 183.603 1 92.18 ? C4' FMN 400 B 1 HETATM 25 O O4' FMN . . . G 2 -14.264 71.959 182.225 1 92.86 ? O4' FMN 400 B 1 HETATM 26 C C5' FMN . . . G 2 -13.547 71.107 184.353 1 92.73 ? C5' FMN 400 B 1 HETATM 27 O O5' FMN . . . G 2 -14.458 70.035 184.133 1 93.55 ? O5' FMN 400 B 1 HETATM 28 P P FMN . . . G 2 -14.298 68.65 184.918 1 93.88 ? P FMN 400 B 1 HETATM 29 O O1P FMN . . . G 2 -15.219 67.719 184.168 1 93.71 ? O1P FMN 400 B 1 HETATM 30 O O2P FMN . . . G 2 -14.741 68.973 186.326 1 93.68 ? O2P FMN 400 B 1 HETATM 31 O O3P FMN . . . G 2 -12.827 68.348 184.759 1 94.42 ? O3P FMN 400 B 1 HETATM 32 H HN3 FMN . . . G 2 -17.495 75.701 177.104 1 105.36 ? HN3 FMN 400 B 1 HETATM 33 H H6 FMN . . . G 2 -18.201 79.982 182.561 1 102.73 ? H6 FMN 400 B 1 HETATM 34 H HM71 FMN . . . G 2 -18.577 80.27 185.732 1 100.06 ? HM71 FMN 400 B 1 HETATM 35 H HM72 FMN . . . G 2 -17.939 81.297 184.496 1 100.06 ? HM72 FMN 400 B 1 HETATM 36 H HM73 FMN . . . G 2 -16.932 80.799 185.81 1 100.06 ? HM73 FMN 400 B 1 HETATM 37 H HM81 FMN . . . G 2 -15.19 78.795 186.561 1 98.91 ? HM81 FMN 400 B 1 HETATM 38 H HM82 FMN . . . G 2 -16.861 78.822 187.006 1 98.91 ? HM82 FMN 400 B 1 HETATM 39 H HM83 FMN . . . G 2 -16.027 77.313 186.869 1 98.91 ? HM83 FMN 400 B 1 HETATM 40 H H9 FMN . . . G 2 -15.545 76.309 184.757 1 102.13 ? H9 FMN 400 B 1 HETATM 41 H "H1'1" FMN . . . G 2 -14.644 75.105 183.478 1 106.56 ? "H1'1" FMN 400 B 1 HETATM 42 H "H1'2" FMN . . . G 2 -14.672 74.328 181.892 1 106.56 ? "H1'2" FMN 400 B 1 HETATM 43 H H2' FMN . . . G 2 -16.552 73.045 182.385 1 108.23 ? H2' FMN 400 B 1 HETATM 44 H HO2' FMN . . . G 2 -17.059 74.605 184.736 1 108.47 ? HO2' FMN 400 B 1 HETATM 45 H H3' FMN . . . G 2 -16.036 71.848 184.389 1 109.47 ? H3' FMN 400 B 1 HETATM 46 H HO3' FMN . . . G 2 -14.533 74.11 185.323 1 109.67 ? HO3' FMN 400 B 1 HETATM 47 H H4' FMN . . . G 2 -13.383 73.147 183.679 1 110.84 ? H4' FMN 400 B 1 HETATM 48 H HO4' FMN . . . G 2 -14.95 71.282 182.148 1 111.66 ? HO4' FMN 400 B 1 HETATM 49 H "H5'1" FMN . . . G 2 -12.553 70.844 183.987 1 111.51 ? "H5'1" FMN 400 B 1 HETATM 50 H "H5'2" FMN . . . G 2 -13.466 71.326 185.42 1 111.51 ? "H5'2" FMN 400 B 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 601 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 50 #