data_6HMJ
#
_model_server_result.job_id            skLVqf5EKvuB2XgRRkG-OA 
_model_server_result.datetime_utc      '2025-03-05 03:04:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hmj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    6HMJ 
#
_exptl.entry_id    6HMJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6HMJ 
_cell.length_a            67.013 
_cell.length_b            150.345 
_cell.length_c            219.783 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HMJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,O,P 1 1 
C,D,I,J,K,L,M,N,Q,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 L N N 
? 3 N N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 192 n n 
C1 C2 GOL sing 193 n n 
C1 H11 GOL sing 194 n n 
C1 H12 GOL sing 195 n n 
O1 HO1 GOL sing 196 n n 
C2 O2 GOL sing 197 n n 
C2 C3 GOL sing 198 n n 
C2 H2 GOL sing 199 n n 
O2 HO2 GOL sing 200 n n 
C3 O3 GOL sing 201 n n 
C3 H31 GOL sing 202 n n 
C3 H32 GOL sing 203 n n 
O3 HO3 GOL sing 204 n n 
#
_atom_sites.entry_id                     6HMJ 
_atom_sites.fract_transf_matrix[1][1]    0.014922 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006651 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00455 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FMN A 1 400 400 FMN FMN . 
F 3 GOL A 1 401 401 GOL GOL . 
G 2 FMN B 1 400 400 FMN FMN . 
H 4 IMD B 1 401 401 IMD IMD . 
I 2 FMN C 1 400 400 FMN FMN . 
J 5 EDO C 1 401 401 EDO EDO . 
K 2 FMN D 1 401 400 FMN FMN . 
L 3 GOL D 1 402 401 GOL GOL . 
M 5 EDO D 1 403 402 EDO EDO . 
N 3 GOL D 1 404 501 GOL GOL . 
O 6 HOH A 1 501 21 HOH HOH . 
O 6 HOH A 2 502 84 HOH HOH . 
O 6 HOH A 3 503 80 HOH HOH . 
O 6 HOH A 4 504 88 HOH HOH . 
O 6 HOH A 5 505 9 HOH HOH . 
O 6 HOH A 6 506 16 HOH HOH . 
O 6 HOH A 7 507 23 HOH HOH . 
O 6 HOH A 8 508 156 HOH HOH . 
O 6 HOH A 9 509 13 HOH HOH . 
O 6 HOH A 10 510 4 HOH HOH . 
O 6 HOH A 11 511 11 HOH HOH . 
O 6 HOH A 12 512 104 HOH HOH . 
O 6 HOH A 13 513 7 HOH HOH . 
O 6 HOH A 14 514 14 HOH HOH . 
O 6 HOH A 15 515 6 HOH HOH . 
O 6 HOH A 16 516 15 HOH HOH . 
O 6 HOH A 17 517 19 HOH HOH . 
O 6 HOH A 18 518 5 HOH HOH . 
O 6 HOH A 19 519 17 HOH HOH . 
O 6 HOH A 20 520 169 HOH HOH . 
O 6 HOH A 21 521 164 HOH HOH . 
O 6 HOH A 22 522 101 HOH HOH . 
O 6 HOH A 23 523 137 HOH HOH . 
O 6 HOH A 24 524 18 HOH HOH . 
O 6 HOH A 25 525 133 HOH HOH . 
O 6 HOH A 26 526 153 HOH HOH . 
O 6 HOH A 27 527 78 HOH HOH . 
O 6 HOH A 28 528 3 HOH HOH . 
O 6 HOH A 29 529 10 HOH HOH . 
O 6 HOH A 30 530 20 HOH HOH . 
O 6 HOH A 31 531 1 HOH HOH . 
O 6 HOH A 32 532 149 HOH HOH . 
O 6 HOH A 33 533 166 HOH HOH . 
O 6 HOH A 34 534 109 HOH HOH . 
O 6 HOH A 35 535 157 HOH HOH . 
O 6 HOH A 36 536 12 HOH HOH . 
O 6 HOH A 37 537 170 HOH HOH . 
O 6 HOH A 38 538 151 HOH HOH . 
O 6 HOH A 39 539 106 HOH HOH . 
O 6 HOH A 40 540 141 HOH HOH . 
O 6 HOH A 41 541 100 HOH HOH . 
O 6 HOH A 42 542 22 HOH HOH . 
O 6 HOH A 43 543 2 HOH HOH . 
O 6 HOH A 44 544 171 HOH HOH . 
O 6 HOH A 45 545 142 HOH HOH . 
O 6 HOH A 46 546 94 HOH HOH . 
O 6 HOH A 47 547 168 HOH HOH . 
O 6 HOH A 48 548 8 HOH HOH . 
O 6 HOH A 49 549 134 HOH HOH . 
O 6 HOH A 50 550 96 HOH HOH . 
O 6 HOH A 51 551 155 HOH HOH . 
O 6 HOH A 52 552 145 HOH HOH . 
O 6 HOH A 53 553 159 HOH HOH . 
O 6 HOH A 54 554 165 HOH HOH . 
O 6 HOH A 55 555 82 HOH HOH . 
O 6 HOH A 56 556 147 HOH HOH . 
O 6 HOH A 57 557 125 HOH HOH . 
O 6 HOH A 58 558 98 HOH HOH . 
P 6 HOH B 1 501 107 HOH HOH . 
P 6 HOH B 2 502 32 HOH HOH . 
P 6 HOH B 3 503 35 HOH HOH . 
P 6 HOH B 4 504 30 HOH HOH . 
P 6 HOH B 5 505 34 HOH HOH . 
P 6 HOH B 6 506 27 HOH HOH . 
P 6 HOH B 7 507 37 HOH HOH . 
P 6 HOH B 8 508 115 HOH HOH . 
P 6 HOH B 9 509 158 HOH HOH . 
P 6 HOH B 10 510 28 HOH HOH . 
P 6 HOH B 11 511 33 HOH HOH . 
P 6 HOH B 12 512 162 HOH HOH . 
P 6 HOH B 13 513 114 HOH HOH . 
P 6 HOH B 14 514 29 HOH HOH . 
P 6 HOH B 15 515 132 HOH HOH . 
P 6 HOH B 16 516 167 HOH HOH . 
P 6 HOH B 17 517 26 HOH HOH . 
P 6 HOH B 18 518 120 HOH HOH . 
P 6 HOH B 19 519 124 HOH HOH . 
P 6 HOH B 20 520 110 HOH HOH . 
P 6 HOH B 21 521 121 HOH HOH . 
P 6 HOH B 22 522 31 HOH HOH . 
P 6 HOH B 23 523 131 HOH HOH . 
P 6 HOH B 24 524 77 HOH HOH . 
P 6 HOH B 25 525 118 HOH HOH . 
Q 6 HOH C 1 501 48 HOH HOH . 
Q 6 HOH C 2 502 42 HOH HOH . 
Q 6 HOH C 3 503 117 HOH HOH . 
Q 6 HOH C 4 504 86 HOH HOH . 
Q 6 HOH C 5 505 81 HOH HOH . 
Q 6 HOH C 6 506 135 HOH HOH . 
Q 6 HOH C 7 507 44 HOH HOH . 
Q 6 HOH C 8 508 51 HOH HOH . 
Q 6 HOH C 9 509 139 HOH HOH . 
Q 6 HOH C 10 510 123 HOH HOH . 
Q 6 HOH C 11 511 40 HOH HOH . 
Q 6 HOH C 12 512 136 HOH HOH . 
Q 6 HOH C 13 513 46 HOH HOH . 
Q 6 HOH C 14 514 45 HOH HOH . 
Q 6 HOH C 15 515 154 HOH HOH . 
Q 6 HOH C 16 516 116 HOH HOH . 
Q 6 HOH C 17 517 49 HOH HOH . 
Q 6 HOH C 18 518 39 HOH HOH . 
Q 6 HOH C 19 519 138 HOH HOH . 
Q 6 HOH C 20 520 41 HOH HOH . 
Q 6 HOH C 21 521 43 HOH HOH . 
Q 6 HOH C 22 522 102 HOH HOH . 
Q 6 HOH C 23 523 129 HOH HOH . 
Q 6 HOH C 24 524 143 HOH HOH . 
Q 6 HOH C 25 525 50 HOH HOH . 
Q 6 HOH C 26 526 130 HOH HOH . 
Q 6 HOH C 27 527 111 HOH HOH . 
Q 6 HOH C 28 528 126 HOH HOH . 
Q 6 HOH C 29 529 146 HOH HOH . 
Q 6 HOH C 30 530 161 HOH HOH . 
Q 6 HOH C 31 531 128 HOH HOH . 
Q 6 HOH C 32 532 140 HOH HOH . 
Q 6 HOH C 33 533 99 HOH HOH . 
Q 6 HOH C 34 534 160 HOH HOH . 
Q 6 HOH C 35 535 89 HOH HOH . 
Q 6 HOH C 36 536 119 HOH HOH . 
Q 6 HOH C 37 537 47 HOH HOH . 
R 6 HOH D 1 501 68 HOH HOH . 
R 6 HOH D 2 502 67 HOH HOH . 
R 6 HOH D 3 503 73 HOH HOH . 
R 6 HOH D 4 504 75 HOH HOH . 
R 6 HOH D 5 505 61 HOH HOH . 
R 6 HOH D 6 506 56 HOH HOH . 
R 6 HOH D 7 507 79 HOH HOH . 
R 6 HOH D 8 508 152 HOH HOH . 
R 6 HOH D 9 509 91 HOH HOH . 
R 6 HOH D 10 510 63 HOH HOH . 
R 6 HOH D 11 511 144 HOH HOH . 
R 6 HOH D 12 512 127 HOH HOH . 
R 6 HOH D 13 513 64 HOH HOH . 
R 6 HOH D 14 514 55 HOH HOH . 
R 6 HOH D 15 515 65 HOH HOH . 
R 6 HOH D 16 516 57 HOH HOH . 
R 6 HOH D 17 517 150 HOH HOH . 
R 6 HOH D 18 518 113 HOH HOH . 
R 6 HOH D 19 519 92 HOH HOH . 
R 6 HOH D 20 520 71 HOH HOH . 
R 6 HOH D 21 521 58 HOH HOH . 
R 6 HOH D 22 522 108 HOH HOH . 
R 6 HOH D 23 523 163 HOH HOH . 
R 6 HOH D 24 524 148 HOH HOH . 
R 6 HOH D 25 525 66 HOH HOH . 
R 6 HOH D 26 526 59 HOH HOH . 
R 6 HOH D 27 527 60 HOH HOH . 
R 6 HOH D 28 528 70 HOH HOH . 
R 6 HOH D 29 529 69 HOH HOH . 
R 6 HOH D 30 530 53 HOH HOH . 
R 6 HOH D 31 531 97 HOH HOH . 
R 6 HOH D 32 532 72 HOH HOH . 
R 6 HOH D 33 533 62 HOH HOH . 
R 6 HOH D 34 534 112 HOH HOH . 
R 6 HOH D 35 535 54 HOH HOH . 
R 6 HOH D 36 536 87 HOH HOH . 
R 6 HOH D 37 537 103 HOH HOH . 
R 6 HOH D 38 538 83 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 3 -15.904 86.833 154.951 1 66.18 ? C1 GOL 401 A 1 
HETATM 2 O O1 GOL . . . F 3 -16.741 87.455 154.027 1 65.18 ? O1 GOL 401 A 1 
HETATM 3 C C2 GOL . . . F 3 -14.511 87.495 154.818 1 66.95 ? C2 GOL 401 A 1 
HETATM 4 O O2 GOL . . . F 3 -14.5 88.807 155.28 1 67.61 ? O2 GOL 401 A 1 
HETATM 5 C C3 GOL . . . F 3 -13.565 86.575 155.62 1 66.23 ? C3 GOL 401 A 1 
HETATM 6 O O3 GOL . . . F 3 -12.307 87.183 155.607 1 66.07 ? O3 GOL 401 A 1 
HETATM 7 H H11 GOL . . . F 3 -16.219 86.929 155.864 1 79.65 ? H11 GOL 401 A 1 
HETATM 8 H H12 GOL . . . F 3 -15.822 85.879 154.798 1 79.65 ? H12 GOL 401 A 1 
HETATM 9 H H2 GOL . . . F 3 -14.245 87.548 153.887 1 80.57 ? H2 GOL 401 A 1 
HETATM 10 H HO2 GOL . . . F 3 -13.756 88.94 155.669 1 81.35 ? HO2 GOL 401 A 1 
HETATM 11 H H31 GOL . . . F 3 -13.571 85.691 155.22 1 79.71 ? H31 GOL 401 A 1 
HETATM 12 H H32 GOL . . . F 3 -13.925 86.454 156.513 1 79.71 ? H32 GOL 401 A 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           12 
#