data_6HN5 # _model_server_result.job_id v3rAzLveeVWLrG2bylD6Lg _model_server_result.datetime_utc '2025-02-27 01:34:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hn5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1006}' # _entry.id 6HN5 # _exptl.entry_id 6HN5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HN5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HN5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n E NAG 1 C 1 NAG E 9111 NAG 4 n E NAG 2 C 2 NAG E 9112 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf4 C SG CYS 8 E CYS 8 1_555 C SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 C SG CYS 126 E CYS 126 1_555 C SG CYS 155 E CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf6 C SG CYS 159 E CYS 159 1_555 C SG CYS 182 E CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf7 C SG CYS 169 E CYS 169 1_555 C SG CYS 188 E CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf8 C SG CYS 192 E CYS 192 1_555 C SG CYS 201 E CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf9 C SG CYS 196 E CYS 196 1_555 C SG CYS 207 E CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf10 C SG CYS 208 E CYS 208 1_555 C SG CYS 216 E CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf11 C SG CYS 212 E CYS 212 1_555 C SG CYS 225 E CYS 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf12 C SG CYS 228 E CYS 228 1_555 C SG CYS 237 E CYS 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 C SG CYS 241 E CYS 241 1_555 C SG CYS 253 E CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf14 C SG CYS 259 E CYS 259 1_555 C SG CYS 284 E CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf15 C SG CYS 266 E CYS 266 1_555 C SG CYS 274 E CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf16 C SG CYS 288 E CYS 288 1_555 C SG CYS 301 E CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf17 C SG CYS 304 E CYS 304 1_555 C SG CYS 308 E CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf18 C SG CYS 312 E CYS 312 1_555 C SG CYS 333 E CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf19 C SG CYS 435 E CYS 435 1_555 C SG CYS 468 E CYS 468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf20 C SG CYS 524 E CYS 524 1_555 D SG CYS 524 F CYS 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf21 D SG CYS 312 F CYS 312 1_555 D SG CYS 333 F CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf22 D SG CYS 435 F CYS 435 1_555 D SG CYS 468 F CYS 468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf23 D SG CYS 682 F CYS 682 1_555 D SG CYS 685 F CYS 685 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 C ND2 ASN 16 E ASN 16 1_555 K C1 NAG . E NAG 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale2 C ND2 ASN 25 E ASN 25 1_555 F C1 NAG . E NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 C ND2 ASN 111 E ASN 111 1_555 E C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale4 C ND2 ASN 215 E ASN 215 1_555 G C1 NAG . E NAG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale5 C ND2 ASN 255 E ASN 255 1_555 H C1 NAG . E NAG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale6 C ND2 ASN 397 E ASN 397 1_555 I C1 NAG . E NAG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale7 C ND2 ASN 418 E ASN 418 1_555 J C1 NAG . E NAG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale8 D ND2 ASN 337 F ASN 337 1_555 L C1 NAG . F NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale9 D ND2 ASN 397 F ASN 397 1_555 M C1 NAG . F NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale10 D ND2 ASN 514 F ASN 514 1_555 N C1 NAG . F NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale11 E O4 NAG . C NAG 1 1_555 E C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6HN5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 NAG E 1 1001 9025 NAG NAG . G 5 NAG E 1 1004 9215 NAG NAG . H 5 NAG E 1 1005 9255 NAG NAG . I 5 NAG E 1 1006 9397 NAG NAG . J 5 NAG E 1 1007 9418 NAG NAG . K 5 NAG E 1 1008 9016 NAG NAG . L 5 NAG F 1 1001 9337 NAG NAG . M 5 NAG F 1 1002 9397 NAG NAG . N 5 NAG F 1 1003 9514 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 5 185.64 126.619 102.849 1 134.97 ? C1 NAG 1006 E 1 HETATM 2 C C2 NAG . . . I 5 185.486 125.141 103.201 1 134.97 ? C2 NAG 1006 E 1 HETATM 3 C C3 NAG . . . I 5 186.727 124.367 102.773 1 134.97 ? C3 NAG 1006 E 1 HETATM 4 C C4 NAG . . . I 5 187.016 124.594 101.295 1 134.97 ? C4 NAG 1006 E 1 HETATM 5 C C5 NAG . . . I 5 187.13 126.089 101.011 1 134.97 ? C5 NAG 1006 E 1 HETATM 6 C C6 NAG . . . I 5 187.297 126.398 99.542 1 134.97 ? C6 NAG 1006 E 1 HETATM 7 C C7 NAG . . . I 5 184.023 124.764 105.135 1 134.97 ? C7 NAG 1006 E 1 HETATM 8 C C8 NAG . . . I 5 183.954 124.618 106.622 1 134.97 ? C8 NAG 1006 E 1 HETATM 9 N N2 NAG . . . I 5 185.24 124.97 104.623 1 134.97 ? N2 NAG 1006 E 1 HETATM 10 O O3 NAG . . . I 5 186.511 122.983 103.015 1 134.97 ? O3 NAG 1006 E 1 HETATM 11 O O4 NAG . . . I 5 188.228 123.948 100.924 1 134.97 ? O4 NAG 1006 E 1 HETATM 12 O O5 NAG . . . I 5 185.933 126.756 101.441 1 134.97 ? O5 NAG 1006 E 1 HETATM 13 O O6 NAG . . . I 5 186.079 126.852 98.969 1 134.97 ? O6 NAG 1006 E 1 HETATM 14 O O7 NAG . . . I 5 183.025 124.699 104.429 1 134.97 ? O7 NAG 1006 E 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #