data_6HNV # _model_server_result.job_id ZMlcEMZqh_OIW4p5x-opEQ _model_server_result.datetime_utc '2024-11-12 21:50:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hnv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6HNV # _exptl.entry_id 6HNV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HNV _cell.length_a 74.57 _cell.length_b 88.54 _cell.length_c 160.96 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HNV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 341 A LYS 341 1_555 C C4A PLP . A PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale2 B NZ LYS 341 B LYS 341 1_555 H C4A PLP . B PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 322 n y N1 C6 PLP sing 323 n y C2 C2A PLP sing 324 n n C2 C3 PLP sing 325 n y C2A H2A1 PLP sing 326 n n C2A H2A2 PLP sing 327 n n C2A H2A3 PLP sing 328 n n C3 O3 PLP sing 329 n n C3 C4 PLP doub 330 n y O3 HO3 PLP sing 331 n n C4 C4A PLP sing 332 n n C4 C5 PLP sing 333 n y C4A O4A PLP doub 334 n n C4A H4A PLP sing 335 n n C5 C6 PLP doub 336 n y C5 C5A PLP sing 337 n n C6 H6 PLP sing 338 n n C5A O4P PLP sing 339 n n C5A H5A1 PLP sing 340 n n C5A H5A2 PLP sing 341 n n O4P P PLP sing 342 n n P O1P PLP doub 343 n n P O2P PLP sing 344 n n P O3P PLP sing 345 n n O2P HOP2 PLP sing 346 n n O3P HOP3 PLP sing 347 n n # _atom_sites.entry_id 6HNV _atom_sites.fract_transf_matrix[1][1] 0.01341 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011294 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006213 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLP A 1 601 1341 PLP LLP . D 3 BCN A 1 602 3 BCN BCN . E 4 MPD A 1 603 5 MPD MPD . F 5 PHE A 1 604 6 PHE PHE . G 6 PPY A 1 605 8 PPY PPY . H 2 PLP B 1 601 1341 PLP LLP . I 7 UN1 B 1 602 1 UN1 UN1 . J 3 BCN B 1 603 2 BCN BCN . K 3 BCN B 1 604 4 BCN BCN . L 8 OOG B 1 605 7 OOG OOG . M 9 HOH A 1 701 195 HOH HOH . M 9 HOH A 2 702 158 HOH HOH . M 9 HOH A 3 703 145 HOH HOH . M 9 HOH A 4 704 70 HOH HOH . M 9 HOH A 5 705 58 HOH HOH . M 9 HOH A 6 706 15 HOH HOH . M 9 HOH A 7 707 180 HOH HOH . M 9 HOH A 8 708 119 HOH HOH . M 9 HOH A 9 709 64 HOH HOH . M 9 HOH A 10 710 93 HOH HOH . M 9 HOH A 11 711 90 HOH HOH . M 9 HOH A 12 712 68 HOH HOH . M 9 HOH A 13 713 54 HOH HOH . M 9 HOH A 14 714 130 HOH HOH . M 9 HOH A 15 715 194 HOH HOH . M 9 HOH A 16 716 6 HOH HOH . M 9 HOH A 17 717 32 HOH HOH . M 9 HOH A 18 718 23 HOH HOH . M 9 HOH A 19 719 34 HOH HOH . M 9 HOH A 20 720 108 HOH HOH . M 9 HOH A 21 721 14 HOH HOH . M 9 HOH A 22 722 157 HOH HOH . M 9 HOH A 23 723 170 HOH HOH . M 9 HOH A 24 724 61 HOH HOH . M 9 HOH A 25 725 187 HOH HOH . M 9 HOH A 26 726 12 HOH HOH . M 9 HOH A 27 727 172 HOH HOH . M 9 HOH A 28 728 96 HOH HOH . M 9 HOH A 29 729 22 HOH HOH . M 9 HOH A 30 730 84 HOH HOH . M 9 HOH A 31 731 67 HOH HOH . M 9 HOH A 32 732 18 HOH HOH . M 9 HOH A 33 733 154 HOH HOH . M 9 HOH A 34 734 20 HOH HOH . M 9 HOH A 35 735 43 HOH HOH . M 9 HOH A 36 736 193 HOH HOH . M 9 HOH A 37 737 121 HOH HOH . M 9 HOH A 38 738 137 HOH HOH . M 9 HOH A 39 739 163 HOH HOH . M 9 HOH A 40 740 178 HOH HOH . M 9 HOH A 41 741 37 HOH HOH . M 9 HOH A 42 742 92 HOH HOH . M 9 HOH A 43 743 107 HOH HOH . M 9 HOH A 44 744 181 HOH HOH . M 9 HOH A 45 745 85 HOH HOH . M 9 HOH A 46 746 95 HOH HOH . M 9 HOH A 47 747 115 HOH HOH . M 9 HOH A 48 748 155 HOH HOH . M 9 HOH A 49 749 11 HOH HOH . M 9 HOH A 50 750 184 HOH HOH . M 9 HOH A 51 751 134 HOH HOH . M 9 HOH A 52 752 79 HOH HOH . M 9 HOH A 53 753 88 HOH HOH . M 9 HOH A 54 754 109 HOH HOH . M 9 HOH A 55 755 30 HOH HOH . M 9 HOH A 56 756 131 HOH HOH . M 9 HOH A 57 757 47 HOH HOH . M 9 HOH A 58 758 105 HOH HOH . M 9 HOH A 59 759 146 HOH HOH . M 9 HOH A 60 760 186 HOH HOH . M 9 HOH A 61 761 190 HOH HOH . M 9 HOH A 62 762 166 HOH HOH . M 9 HOH A 63 763 144 HOH HOH . M 9 HOH A 64 764 191 HOH HOH . M 9 HOH A 65 765 120 HOH HOH . M 9 HOH A 66 766 78 HOH HOH . M 9 HOH A 67 767 42 HOH HOH . M 9 HOH A 68 768 9 HOH HOH . M 9 HOH A 69 769 91 HOH HOH . M 9 HOH A 70 770 98 HOH HOH . M 9 HOH A 71 771 103 HOH HOH . M 9 HOH A 72 772 116 HOH HOH . M 9 HOH A 73 773 159 HOH HOH . M 9 HOH A 74 774 49 HOH HOH . M 9 HOH A 75 775 60 HOH HOH . M 9 HOH A 76 776 173 HOH HOH . M 9 HOH A 77 777 7 HOH HOH . M 9 HOH A 78 778 66 HOH HOH . M 9 HOH A 79 779 128 HOH HOH . M 9 HOH A 80 780 174 HOH HOH . M 9 HOH A 81 781 71 HOH HOH . M 9 HOH A 82 782 81 HOH HOH . M 9 HOH A 83 783 175 HOH HOH . M 9 HOH A 84 784 171 HOH HOH . M 9 HOH A 85 785 65 HOH HOH . M 9 HOH A 86 786 75 HOH HOH . M 9 HOH A 87 787 86 HOH HOH . M 9 HOH A 88 788 77 HOH HOH . M 9 HOH A 89 789 82 HOH HOH . N 9 HOH B 1 701 141 HOH HOH . N 9 HOH B 2 702 140 HOH HOH . N 9 HOH B 3 703 122 HOH HOH . N 9 HOH B 4 704 150 HOH HOH . N 9 HOH B 5 705 1 HOH HOH . N 9 HOH B 6 706 151 HOH HOH . N 9 HOH B 7 707 147 HOH HOH . N 9 HOH B 8 708 139 HOH HOH . N 9 HOH B 9 709 152 HOH HOH . N 9 HOH B 10 710 19 HOH HOH . N 9 HOH B 11 711 89 HOH HOH . N 9 HOH B 12 712 153 HOH HOH . N 9 HOH B 13 713 33 HOH HOH . N 9 HOH B 14 714 35 HOH HOH . N 9 HOH B 15 715 149 HOH HOH . N 9 HOH B 16 716 118 HOH HOH . N 9 HOH B 17 717 169 HOH HOH . N 9 HOH B 18 718 132 HOH HOH . N 9 HOH B 19 719 192 HOH HOH . N 9 HOH B 20 720 29 HOH HOH . N 9 HOH B 21 721 143 HOH HOH . N 9 HOH B 22 722 52 HOH HOH . N 9 HOH B 23 723 100 HOH HOH . N 9 HOH B 24 724 53 HOH HOH . N 9 HOH B 25 725 62 HOH HOH . N 9 HOH B 26 726 44 HOH HOH . N 9 HOH B 27 727 10 HOH HOH . N 9 HOH B 28 728 63 HOH HOH . N 9 HOH B 29 729 4 HOH HOH . N 9 HOH B 30 730 46 HOH HOH . N 9 HOH B 31 731 168 HOH HOH . N 9 HOH B 32 732 24 HOH HOH . N 9 HOH B 33 733 17 HOH HOH . N 9 HOH B 34 734 74 HOH HOH . N 9 HOH B 35 735 179 HOH HOH . N 9 HOH B 36 736 183 HOH HOH . N 9 HOH B 37 737 41 HOH HOH . N 9 HOH B 38 738 3 HOH HOH . N 9 HOH B 39 739 185 HOH HOH . N 9 HOH B 40 740 40 HOH HOH . N 9 HOH B 41 741 31 HOH HOH . N 9 HOH B 42 742 13 HOH HOH . N 9 HOH B 43 743 124 HOH HOH . N 9 HOH B 44 744 167 HOH HOH . N 9 HOH B 45 745 50 HOH HOH . N 9 HOH B 46 746 69 HOH HOH . N 9 HOH B 47 747 26 HOH HOH . N 9 HOH B 48 748 123 HOH HOH . N 9 HOH B 49 749 142 HOH HOH . N 9 HOH B 50 750 102 HOH HOH . N 9 HOH B 51 751 16 HOH HOH . N 9 HOH B 52 752 161 HOH HOH . N 9 HOH B 53 753 114 HOH HOH . N 9 HOH B 54 754 2 HOH HOH . N 9 HOH B 55 755 160 HOH HOH . N 9 HOH B 56 756 188 HOH HOH . N 9 HOH B 57 757 106 HOH HOH . N 9 HOH B 58 758 38 HOH HOH . N 9 HOH B 59 759 51 HOH HOH . N 9 HOH B 60 760 5 HOH HOH . N 9 HOH B 61 761 94 HOH HOH . N 9 HOH B 62 762 28 HOH HOH . N 9 HOH B 63 763 45 HOH HOH . N 9 HOH B 64 764 189 HOH HOH . N 9 HOH B 65 765 72 HOH HOH . N 9 HOH B 66 766 126 HOH HOH . N 9 HOH B 67 767 25 HOH HOH . N 9 HOH B 68 768 104 HOH HOH . N 9 HOH B 69 769 162 HOH HOH . N 9 HOH B 70 770 156 HOH HOH . N 9 HOH B 71 771 27 HOH HOH . N 9 HOH B 72 772 182 HOH HOH . N 9 HOH B 73 773 164 HOH HOH . N 9 HOH B 74 774 125 HOH HOH . N 9 HOH B 75 775 133 HOH HOH . N 9 HOH B 76 776 36 HOH HOH . N 9 HOH B 77 777 135 HOH HOH . N 9 HOH B 78 778 101 HOH HOH . N 9 HOH B 79 779 48 HOH HOH . N 9 HOH B 80 780 136 HOH HOH . N 9 HOH B 81 781 8 HOH HOH . N 9 HOH B 82 782 127 HOH HOH . N 9 HOH B 83 783 21 HOH HOH . N 9 HOH B 84 784 73 HOH HOH . N 9 HOH B 85 785 129 HOH HOH . N 9 HOH B 86 786 57 HOH HOH . N 9 HOH B 87 787 177 HOH HOH . N 9 HOH B 88 788 39 HOH HOH . N 9 HOH B 89 789 99 HOH HOH . N 9 HOH B 90 790 138 HOH HOH . N 9 HOH B 91 791 165 HOH HOH . N 9 HOH B 92 792 83 HOH HOH . N 9 HOH B 93 793 148 HOH HOH . N 9 HOH B 94 794 112 HOH HOH . N 9 HOH B 95 795 176 HOH HOH . N 9 HOH B 96 796 87 HOH HOH . N 9 HOH B 97 797 110 HOH HOH . N 9 HOH B 98 798 97 HOH HOH . N 9 HOH B 99 799 80 HOH HOH . N 9 HOH B 100 800 55 HOH HOH . N 9 HOH B 101 801 59 HOH HOH . N 9 HOH B 102 802 117 HOH HOH . N 9 HOH B 103 803 111 HOH HOH . N 9 HOH B 104 804 113 HOH HOH . N 9 HOH B 105 805 56 HOH HOH . N 9 HOH B 106 806 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . C 2 62.95 40.595 -13.947 1 41.05 ? N1 PLP 601 A 1 HETATM 2 C C2 PLP . . . C 2 63.547 39.931 -14.939 1 41.58 ? C2 PLP 601 A 1 HETATM 3 C C2A PLP . . . C 2 62.962 40.051 -16.306 1 41.84 ? C2A PLP 601 A 1 HETATM 4 C C3 PLP . . . C 2 64.705 39.159 -14.705 1 40.37 ? C3 PLP 601 A 1 HETATM 5 O O3 PLP . . . C 2 65.274 38.514 -15.73 1 37.42 ? O3 PLP 601 A 1 HETATM 6 C C4 PLP . . . C 2 65.243 39.068 -13.407 1 47.26 ? C4 PLP 601 A 1 HETATM 7 C C4A PLP . . . C 2 66.474 38.263 -13.172 1 52.25 ? C4A PLP 601 A 1 HETATM 8 C C5 PLP . . . C 2 64.577 39.774 -12.387 1 44.54 ? C5 PLP 601 A 1 HETATM 9 C C6 PLP . . . C 2 63.456 40.499 -12.699 1 43.68 ? C6 PLP 601 A 1 HETATM 10 C C5A PLP . . . C 2 64.997 39.697 -10.956 1 47.32 ? C5A PLP 601 A 1 HETATM 11 O O4P PLP . . . C 2 65.733 40.872 -10.529 1 49.2 ? O4P PLP 601 A 1 HETATM 12 P P PLP . . . C 2 66.381 40.767 -9.085 1 42.56 ? P PLP 601 A 1 HETATM 13 O O1P PLP . . . C 2 67.227 39.52 -9.124 1 44.57 ? O1P PLP 601 A 1 HETATM 14 O O2P PLP . . . C 2 67.231 42.017 -8.923 1 41.33 ? O2P PLP 601 A 1 HETATM 15 O O3P PLP . . . C 2 65.175 40.656 -8.158 1 47.25 ? O3P PLP 601 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 15 #