data_6HNX # _model_server_result.job_id 0u3jT87OzCRrBUwcMKq1OQ _model_server_result.datetime_utc '2025-01-10 21:58:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hnx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6HNX # _exptl.entry_id 6HNX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 454.56 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4-(4-oxidanylidene-1'-propan-2-yl-spiro[3~{H}-chromene-2,4'-piperidine]-6-yl)-~{N}-phenyl-benzamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HNX _cell.length_a 121.511 _cell.length_b 121.511 _cell.length_c 33.854 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HNX _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H30 N2 O3' _chem_comp.formula_weight 454.56 _chem_comp.id GFZ _chem_comp.mon_nstd_flag . _chem_comp.name "4-(4-oxidanylidene-1'-propan-2-yl-spiro[3~{H}-chromene-2,4'-piperidine]-6-yl)-~{N}-phenyl-benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 C29 GFZ doub 70 n y C28 C27 GFZ sing 71 n y O3 C23 GFZ doub 72 n n C29 C24 GFZ sing 73 n y C27 C26 GFZ doub 74 n y C21 C22 GFZ doub 75 n y C21 C20 GFZ sing 76 n y C23 N2 GFZ sing 77 n n C23 C20 GFZ sing 78 n n C24 N2 GFZ sing 79 n n C24 C25 GFZ doub 80 n y C22 C17 GFZ sing 81 n y C20 C19 GFZ doub 82 n y C26 C25 GFZ sing 83 n y O1 C10 GFZ doub 84 n n C10 C11 GFZ sing 85 n n C10 C9 GFZ sing 86 n n C5 C4 GFZ sing 87 n n C5 C6 GFZ sing 88 n n C12 C11 GFZ doub 89 n y C12 C13 GFZ sing 90 n y C17 C13 GFZ sing 91 n n C17 C18 GFZ doub 92 n y C19 C18 GFZ sing 93 n y C4 N1 GFZ sing 94 n n C11 C16 GFZ sing 95 n y C13 C14 GFZ doub 96 n y C9 C6 GFZ sing 97 n n N1 C2 GFZ sing 98 n n N1 C8 GFZ sing 99 n n C6 O2 GFZ sing 100 n n C6 C7 GFZ sing 101 n n C2 C3 GFZ sing 102 n n C2 C1 GFZ sing 103 n n C16 O2 GFZ sing 104 n n C16 C15 GFZ doub 105 n y C14 C15 GFZ sing 106 n y C7 C8 GFZ sing 107 n n C4 H1 GFZ sing 108 n n C4 H2 GFZ sing 109 n n C14 H3 GFZ sing 110 n n C5 H4 GFZ sing 111 n n C5 H5 GFZ sing 112 n n C7 H6 GFZ sing 113 n n C7 H7 GFZ sing 114 n n C8 H8 GFZ sing 115 n n C8 H9 GFZ sing 116 n n C9 H10 GFZ sing 117 n n C9 H11 GFZ sing 118 n n C12 H12 GFZ sing 119 n n N2 H14 GFZ sing 120 n n C3 H15 GFZ sing 121 n n C3 H16 GFZ sing 122 n n C3 H17 GFZ sing 123 n n C1 H18 GFZ sing 124 n n C1 H19 GFZ sing 125 n n C1 H20 GFZ sing 126 n n C2 H21 GFZ sing 127 n n C15 H22 GFZ sing 128 n n C18 H23 GFZ sing 129 n n C19 H24 GFZ sing 130 n n C21 H25 GFZ sing 131 n n C22 H26 GFZ sing 132 n n C25 H27 GFZ sing 133 n n C26 H28 GFZ sing 134 n n C27 H29 GFZ sing 135 n n C28 H30 GFZ sing 136 n n C29 H31 GFZ sing 137 n n # _atom_sites.entry_id 6HNX _atom_sites.fract_transf_matrix[1][1] 0.00823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00823 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029539 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GFZ A 1 301 1 GFZ DRG . C 3 HOH A 1 401 40 HOH HOH . C 3 HOH A 2 402 29 HOH HOH . C 3 HOH A 3 403 2 HOH HOH . C 3 HOH A 4 404 23 HOH HOH . C 3 HOH A 5 405 5 HOH HOH . C 3 HOH A 6 406 44 HOH HOH . C 3 HOH A 7 407 13 HOH HOH . C 3 HOH A 8 408 10 HOH HOH . C 3 HOH A 9 409 16 HOH HOH . C 3 HOH A 10 410 6 HOH HOH . C 3 HOH A 11 411 37 HOH HOH . C 3 HOH A 12 412 32 HOH HOH . C 3 HOH A 13 413 30 HOH HOH . C 3 HOH A 14 414 9 HOH HOH . C 3 HOH A 15 415 15 HOH HOH . C 3 HOH A 16 416 24 HOH HOH . C 3 HOH A 17 417 12 HOH HOH . C 3 HOH A 18 418 17 HOH HOH . C 3 HOH A 19 419 41 HOH HOH . C 3 HOH A 20 420 3 HOH HOH . C 3 HOH A 21 421 1 HOH HOH . C 3 HOH A 22 422 14 HOH HOH . C 3 HOH A 23 423 38 HOH HOH . C 3 HOH A 24 424 28 HOH HOH . C 3 HOH A 25 425 8 HOH HOH . C 3 HOH A 26 426 33 HOH HOH . C 3 HOH A 27 427 42 HOH HOH . C 3 HOH A 28 428 34 HOH HOH . C 3 HOH A 29 429 21 HOH HOH . C 3 HOH A 30 430 31 HOH HOH . C 3 HOH A 31 431 18 HOH HOH . C 3 HOH A 32 432 45 HOH HOH . C 3 HOH A 33 433 11 HOH HOH . C 3 HOH A 34 434 27 HOH HOH . C 3 HOH A 35 435 4 HOH HOH . C 3 HOH A 36 436 20 HOH HOH . C 3 HOH A 37 437 36 HOH HOH . C 3 HOH A 38 438 7 HOH HOH . C 3 HOH A 39 439 39 HOH HOH . C 3 HOH A 40 440 25 HOH HOH . C 3 HOH A 41 441 35 HOH HOH . C 3 HOH A 42 442 19 HOH HOH . C 3 HOH A 43 443 26 HOH HOH . C 3 HOH A 44 444 43 HOH HOH . C 3 HOH A 45 445 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 GFZ . . . B 2 2.86 23.969 3.977 1 27.2 ? C4 GFZ 301 A 1 HETATM 2 C C14 GFZ . . . B 2 8.195 26.302 5.285 1 20.97 ? C14 GFZ 301 A 1 HETATM 3 C C5 GFZ . . . B 2 3.16 25.394 3.55 1 26.76 ? C5 GFZ 301 A 1 HETATM 4 C C6 GFZ . . . B 2 3.312 26.334 4.766 1 25.72 ? C6 GFZ 301 A 1 HETATM 5 C C11 GFZ . . . B 2 5.909 27.312 4.078 1 20.93 ? C11 GFZ 301 A 1 HETATM 6 C C7 GFZ . . . B 2 2.056 26.202 5.672 1 27.69 ? C7 GFZ 301 A 1 HETATM 7 C C8 GFZ . . . B 2 1.7 24.726 5.932 1 28.69 ? C8 GFZ 301 A 1 HETATM 8 C C9 GFZ . . . B 2 3.343 27.754 4.278 1 25.1 ? C9 GFZ 301 A 1 HETATM 9 C C10 GFZ . . . B 2 4.658 27.911 3.527 1 26.29 ? C10 GFZ 301 A 1 HETATM 10 C C12 GFZ . . . B 2 7.169 27.604 3.586 1 20.43 ? C12 GFZ 301 A 1 HETATM 11 C C13 GFZ . . . B 2 8.329 27.12 4.172 1 17.63 ? C13 GFZ 301 A 1 HETATM 12 N N1 GFZ . . . B 2 1.558 23.922 4.703 1 29.64 ? N1 GFZ 301 A 1 HETATM 13 N N2 GFZ . . . B 2 14.489 28.644 2.423 1 15.1 ? N2 GFZ 301 A 1 HETATM 14 C C3 GFZ . . . B 2 2.177 21.574 5.294 1 44.21 ? C3 GFZ 301 A 1 HETATM 15 C C1 GFZ . . . B 2 0.045 22.459 6.12 1 43.11 ? C1 GFZ 301 A 1 HETATM 16 C C2 GFZ . . . B 2 1.073 22.535 4.982 1 38.58 ? C2 GFZ 301 A 1 HETATM 17 O O1 GFZ . . . B 2 4.681 28.733 2.604 1 27.17 ? O1 GFZ 301 A 1 HETATM 18 C C15 GFZ . . . B 2 6.93 25.966 5.759 1 22.45 ? C15 GFZ 301 A 1 HETATM 19 C C16 GFZ . . . B 2 5.783 26.456 5.147 1 23.72 ? C16 GFZ 301 A 1 HETATM 20 O O2 GFZ . . . B 2 4.514 26.16 5.611 1 25.58 ? O2 GFZ 301 A 1 HETATM 21 C C17 GFZ . . . B 2 9.667 27.441 3.639 1 14.8 ? C17 GFZ 301 A 1 HETATM 22 C C18 GFZ . . . B 2 10.731 27.93 4.401 1 15.16 ? C18 GFZ 301 A 1 HETATM 23 C C19 GFZ . . . B 2 11.971 28.159 3.801 1 16.15 ? C19 GFZ 301 A 1 HETATM 24 C C20 GFZ . . . B 2 12.158 27.882 2.445 1 14.95 ? C20 GFZ 301 A 1 HETATM 25 C C21 GFZ . . . B 2 11.103 27.423 1.721 1 15.26 ? C21 GFZ 301 A 1 HETATM 26 C C22 GFZ . . . B 2 9.892 27.191 2.299 1 14.13 ? C22 GFZ 301 A 1 HETATM 27 C C23 GFZ . . . B 2 13.424 28.205 1.726 1 15.15 ? C23 GFZ 301 A 1 HETATM 28 O O3 GFZ . . . B 2 13.493 28.133 0.476 1 16.25 ? O3 GFZ 301 A 1 HETATM 29 C C24 GFZ . . . B 2 15.626 29.295 1.956 1 15.41 ? C24 GFZ 301 A 1 HETATM 30 C C25 GFZ . . . B 2 16.578 29.588 2.894 1 16.12 ? C25 GFZ 301 A 1 HETATM 31 C C26 GFZ . . . B 2 17.74 30.283 2.563 1 17.85 ? C26 GFZ 301 A 1 HETATM 32 C C27 GFZ . . . B 2 17.992 30.69 1.266 1 16.93 ? C27 GFZ 301 A 1 HETATM 33 C C28 GFZ . . . B 2 17.03 30.43 0.323 1 15.88 ? C28 GFZ 301 A 1 HETATM 34 C C29 GFZ . . . B 2 15.854 29.762 0.636 1 16.85 ? C29 GFZ 301 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #