data_6HO5 # _model_server_result.job_id oY-1N3-tYoMAY_hcuLHH1g _model_server_result.datetime_utc '2024-11-22 06:25:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ho5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6HO5 # _exptl.entry_id 6HO5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 468.587 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4-(4-oxidanylidene-1'-propan-2-yl-spiro[3~{H}-chromene-2,4'-piperidine]-6-yl)-~{N}-(phenylmethyl)benzamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HO5 _cell.length_a 120.89 _cell.length_b 120.89 _cell.length_c 33.76 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HO5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H32 N2 O3' _chem_comp.formula_weight 468.587 _chem_comp.id GH8 _chem_comp.mon_nstd_flag . _chem_comp.name "4-(4-oxidanylidene-1'-propan-2-yl-spiro[3~{H}-chromene-2,4'-piperidine]-6-yl)-~{N}-(phenylmethyl)benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C29 C28 GH8 doub 70 n y C29 C30 GH8 sing 71 n y C28 C27 GH8 sing 72 n y C30 C25 GH8 doub 73 n y O3 C23 GH8 doub 74 n n C27 C26 GH8 doub 75 n y C25 C26 GH8 sing 76 n y C25 C24 GH8 sing 77 n n C21 C22 GH8 doub 78 n y C21 C20 GH8 sing 79 n y C23 C20 GH8 sing 80 n n C23 N2 GH8 sing 81 n n C22 C17 GH8 sing 82 n y O1 C10 GH8 doub 83 n n C24 N2 GH8 sing 84 n n C20 C19 GH8 doub 85 n y C5 C4 GH8 sing 86 n n C5 C6 GH8 sing 87 n n C4 N1 GH8 sing 88 n n C10 C11 GH8 sing 89 n n C10 C9 GH8 sing 90 n n C12 C11 GH8 doub 91 n y C12 C13 GH8 sing 92 n y C3 C2 GH8 sing 93 n n C17 C13 GH8 sing 94 n n C17 C18 GH8 doub 95 n y C11 C16 GH8 sing 96 n y C9 C6 GH8 sing 97 n n C19 C18 GH8 sing 98 n y C13 C14 GH8 doub 99 n y C6 C7 GH8 sing 100 n n C6 O2 GH8 sing 101 n n N1 C2 GH8 sing 102 n n N1 C8 GH8 sing 103 n n C2 C1 GH8 sing 104 n n C16 O2 GH8 sing 105 n n C16 C15 GH8 doub 106 n y C14 C15 GH8 sing 107 n y C7 C8 GH8 sing 108 n n C4 H2 GH8 sing 109 n n C4 H3 GH8 sing 110 n n C5 H4 GH8 sing 111 n n C5 H5 GH8 sing 112 n n C7 H6 GH8 sing 113 n n C7 H7 GH8 sing 114 n n C8 H8 GH8 sing 115 n n C8 H9 GH8 sing 116 n n C15 H10 GH8 sing 117 n n C21 H11 GH8 sing 118 n n C22 H12 GH8 sing 119 n n C24 H13 GH8 sing 120 n n C24 H14 GH8 sing 121 n n C26 H15 GH8 sing 122 n n C28 H16 GH8 sing 123 n n C1 H17 GH8 sing 124 n n C1 H18 GH8 sing 125 n n C1 H19 GH8 sing 126 n n C2 H20 GH8 sing 127 n n C3 H21 GH8 sing 128 n n C3 H22 GH8 sing 129 n n C3 H23 GH8 sing 130 n n C9 H24 GH8 sing 131 n n C9 H25 GH8 sing 132 n n C12 H26 GH8 sing 133 n n C14 H27 GH8 sing 134 n n C18 H28 GH8 sing 135 n n C19 H29 GH8 sing 136 n n N2 H30 GH8 sing 137 n n C27 H31 GH8 sing 138 n n C29 H32 GH8 sing 139 n n C30 H33 GH8 sing 140 n n # _atom_sites.entry_id 6HO5 _atom_sites.fract_transf_matrix[1][1] 0.008272 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008272 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029621 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GH8 A 1 301 1 GH8 LIG . C 3 HOH A 1 401 2 HOH HOH . C 3 HOH A 2 402 5 HOH HOH . C 3 HOH A 3 403 7 HOH HOH . C 3 HOH A 4 404 4 HOH HOH . C 3 HOH A 5 405 3 HOH HOH . C 3 HOH A 6 406 1 HOH HOH . C 3 HOH A 7 407 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GH8 . . . B 2 -1.777 -23.431 4.65 1 43.99 ? N1 GH8 301 A 1 HETATM 2 C C4 GH8 . . . B 2 -1.867 -24.052 3.328 1 42.66 ? C4 GH8 301 A 1 HETATM 3 C C5 GH8 . . . B 2 -3.005 -25.055 3.293 1 40.56 ? C5 GH8 301 A 1 HETATM 4 C C6 GH8 . . . B 2 -2.99 -25.999 4.516 1 42.26 ? C6 GH8 301 A 1 HETATM 5 C C7 GH8 . . . B 2 -1.734 -25.874 5.341 1 41.73 ? C7 GH8 301 A 1 HETATM 6 C C8 GH8 . . . B 2 -1.439 -24.427 5.691 1 44.63 ? C8 GH8 301 A 1 HETATM 7 C C10 GH8 . . . B 2 -4.382 -27.69 3.386 1 40.46 ? C10 GH8 301 A 1 HETATM 8 C C13 GH8 . . . B 2 -7.977 -26.817 4.093 1 30.49 ? C13 GH8 301 A 1 HETATM 9 C C15 GH8 . . . B 2 -6.533 -25.522 5.508 1 36.75 ? C15 GH8 301 A 1 HETATM 10 C C17 GH8 . . . B 2 -9.329 -27.111 3.636 1 27.91 ? C17 GH8 301 A 1 HETATM 11 C C20 GH8 . . . B 2 -11.907 -27.528 2.645 1 27.38 ? C20 GH8 301 A 1 HETATM 12 C C21 GH8 . . . B 2 -10.898 -27.183 1.783 1 26.61 ? C21 GH8 301 A 1 HETATM 13 C C22 GH8 . . . B 2 -9.631 -26.959 2.284 1 28.69 ? C22 GH8 301 A 1 HETATM 14 C C24 GH8 . . . B 2 -15.63 -28.14 2.547 1 33.28 ? C24 GH8 301 A 1 HETATM 15 C C26 GH8 . . . B 2 -16.15 -30.566 2.308 1 36.39 ? C26 GH8 301 A 1 HETATM 16 C C28 GH8 . . . B 2 -16.927 -31.526 0.24 1 37.62 ? C28 GH8 301 A 1 HETATM 17 C C1 GH8 . . . B 2 -1.102 -21.502 5.943 1 50.68 ? C1 GH8 301 A 1 HETATM 18 C C2 GH8 . . . B 2 -0.773 -22.361 4.735 1 47.99 ? C2 GH8 301 A 1 HETATM 19 C C3 GH8 . . . B 2 -0.771 -21.402 3.569 1 48.74 ? C3 GH8 301 A 1 HETATM 20 C C9 GH8 . . . B 2 -3.019 -27.427 3.988 1 41.07 ? C9 GH8 301 A 1 HETATM 21 O O1 GH8 . . . B 2 -4.505 -28.517 2.478 1 45.02 ? O1 GH8 301 A 1 HETATM 22 C C11 GH8 . . . B 2 -5.584 -27.034 3.937 1 37.45 ? C11 GH8 301 A 1 HETATM 23 C C12 GH8 . . . B 2 -6.862 -27.387 3.503 1 34.05 ? C12 GH8 301 A 1 HETATM 24 C C14 GH8 . . . B 2 -7.814 -25.876 5.082 1 32.91 ? C14 GH8 301 A 1 HETATM 25 C C16 GH8 . . . B 2 -5.4 -26.101 4.952 1 37.75 ? C16 GH8 301 A 1 HETATM 26 O O2 GH8 . . . B 2 -4.117 -25.774 5.39 1 41.36 ? O2 GH8 301 A 1 HETATM 27 C C18 GH8 . . . B 2 -10.337 -27.416 4.509 1 27.43 ? C18 GH8 301 A 1 HETATM 28 C C19 GH8 . . . B 2 -11.615 -27.636 4.007 1 27.14 ? C19 GH8 301 A 1 HETATM 29 C C23 GH8 . . . B 2 -13.289 -27.764 2.102 1 29.2 ? C23 GH8 301 A 1 HETATM 30 O O3 GH8 . . . B 2 -13.555 -27.47 0.934 1 29.9 ? O3 GH8 301 A 1 HETATM 31 N N2 GH8 . . . B 2 -14.234 -28.259 2.887 1 31.74 ? N2 GH8 301 A 1 HETATM 32 C C25 GH8 . . . B 2 -16.07 -29.325 1.717 1 34.02 ? C25 GH8 301 A 1 HETATM 33 C C27 GH8 . . . B 2 -16.578 -31.666 1.575 1 38.42 ? C27 GH8 301 A 1 HETATM 34 C C29 GH8 . . . B 2 -16.871 -30.278 -0.343 1 35.74 ? C29 GH8 301 A 1 HETATM 35 C C30 GH8 . . . B 2 -16.444 -29.179 0.393 1 34.34 ? C30 GH8 301 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 35 #