data_6HPS # _model_server_result.job_id vhWhz3DTvurUVLSYZ4UQeQ _model_server_result.datetime_utc '2025-01-10 03:06:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hps # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6HPS # _exptl.entry_id 6HPS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 632.649 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[[2-[(~{E})-2-(6-oxidanyl-1,3-benzothiazol-2-yl)ethenyl]-1,3-thiazol-4-yl]carbonyl]sulfamate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.18 _cell.angle_gamma 90 _cell.entry_id 6HPS _cell.length_a 47.509 _cell.length_b 114.016 _cell.length_c 101.557 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HPS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C23 H20 N8 O8 S3' _chem_comp.formula_weight 632.649 _chem_comp.id GKH _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[[2-[(~{E})-2-(6-oxidanyl-1,3-benzothiazol-2-yl)ethenyl]-1,3-thiazol-4-yl]carbonyl]sulfamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N3 GKH doub 83 n y C2 N1 GKH sing 84 n y N3 C4 GKH sing 85 n y N1 C6 GKH doub 86 n y C1' N9 GKH sing 87 n n C1' O4' GKH sing 88 n n C1' C2' GKH sing 89 n n C4 N9 GKH sing 90 n y C4 C5 GKH doub 91 n y O2' C2' GKH sing 92 n n N9 C8 GKH sing 93 n y O4' C4' GKH sing 94 n n C6 C5 GKH sing 95 n y C6 N6 GKH sing 96 n n C5 N7 GKH sing 97 n y OBK SAP GKH doub 98 n n OBL CAN GKH doub 99 n n C8 N7 GKH doub 100 n y C2' C3' GKH sing 101 n n O5' SAP GKH sing 102 n n O5' C5' GKH sing 103 n n C4' C5' GKH sing 104 n n C4' C3' GKH sing 105 n n SAP NAO GKH sing 106 n n SAP OBJ GKH doub 107 n n CAN NAO GKH sing 108 n n CAN CAM GKH sing 109 n n C3' O3' GKH sing 110 n n SAG CAF GKH sing 111 n y SAG CAH GKH sing 112 n y CAM NAL GKH sing 113 n y CAM CBM GKH doub 114 n y CAI CAH GKH sing 115 n n CAI CAJ GKH doub 116 e n CBP CAF GKH doub 117 n y CBP CAB GKH sing 118 n y NAL CAK GKH doub 119 n y CAF CAE GKH sing 120 n y CAH NBO GKH doub 121 n y OAA CAB GKH sing 122 n n CBM SBN GKH sing 123 n y CAB CAC GKH doub 124 n y CAK CAJ GKH sing 125 n n CAK SBN GKH sing 126 n y CAE NBO GKH sing 127 n y CAE CAD GKH doub 128 n y CAC CAD GKH sing 129 n y C2 H1 GKH sing 130 n n CAD H2 GKH sing 131 n n CAC H3 GKH sing 132 n n OAA H4 GKH sing 133 n n CBP H5 GKH sing 134 n n CAI H6 GKH sing 135 n n CAJ H7 GKH sing 136 n n CBM H8 GKH sing 137 n n NAO H9 GKH sing 138 n n C5' H10 GKH sing 139 n n C5' H11 GKH sing 140 n n C4' H12 GKH sing 141 n n C3' H13 GKH sing 142 n n O3' H14 GKH sing 143 n n C2' H15 GKH sing 144 n n O2' H16 GKH sing 145 n n C1' H17 GKH sing 146 n n C8 H18 GKH sing 147 n n N6 H19 GKH sing 148 n n N6 H20 GKH sing 149 n n # _atom_sites.entry_id 6HPS _atom_sites.fract_transf_matrix[1][1] 0.021049 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003027 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GKH A 1 601 601 GKH PDB . D 2 GKH B 1 601 601 GKH PDB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 GKH . . . C 2 46.945 -16.719 44.123 1 15.7 ? C2 GKH 601 A 1 HETATM 2 C C4 GKH . . . C 2 46.693 -14.451 44.665 1 16.74 ? C4 GKH 601 A 1 HETATM 3 C C5 GKH . . . C 2 47.987 -14.372 45.011 1 16.63 ? C5 GKH 601 A 1 HETATM 4 C C6 GKH . . . C 2 48.762 -15.462 44.906 1 16.21 ? C6 GKH 601 A 1 HETATM 5 N N9 GKH . . . C 2 46.144 -13.254 44.851 1 18.12 ? N9 GKH 601 A 1 HETATM 6 N NBO GKH . . . C 2 54.228 -8.671 48.067 1 21.78 ? NBO GKH 601 A 1 HETATM 7 C CAE GKH . . . C 2 55.383 -9.404 48.03 1 22.22 ? CAE GKH 601 A 1 HETATM 8 C CAD GKH . . . C 2 56.578 -9.166 48.642 1 22.56 ? CAD GKH 601 A 1 HETATM 9 C CAC GKH . . . C 2 57.684 -10.037 48.504 1 22.13 ? CAC GKH 601 A 1 HETATM 10 C CAB GKH . . . C 2 57.545 -11.189 47.71 1 21.97 ? CAB GKH 601 A 1 HETATM 11 O OAA GKH . . . C 2 58.552 -12.1 47.508 1 21.54 ? OAA GKH 601 A 1 HETATM 12 C CBP GKH . . . C 2 56.31 -11.399 47.102 1 21.85 ? CBP GKH 601 A 1 HETATM 13 C CAF GKH . . . C 2 55.296 -10.537 47.262 1 21.7 ? CAF GKH 601 A 1 HETATM 14 S SAG GKH . . . C 2 53.946 -10.639 46.692 1 20.92 ? SAG GKH 601 A 1 HETATM 15 C CAH GKH . . . C 2 53.319 -9.283 47.316 1 21.94 ? CAH GKH 601 A 1 HETATM 16 C CAI GKH . . . C 2 52.065 -8.939 47.051 1 22.37 ? CAI GKH 601 A 1 HETATM 17 C CAJ GKH . . . C 2 51.196 -8.403 48.152 1 22.64 ? CAJ GKH 601 A 1 HETATM 18 C CAK GKH . . . C 2 49.938 -8.092 47.827 1 23.62 ? CAK GKH 601 A 1 HETATM 19 N NAL GKH . . . C 2 48.992 -8.783 47.113 1 23.95 ? NAL GKH 601 A 1 HETATM 20 S SBN GKH . . . C 2 49.388 -6.788 48.27 1 25.44 ? SBN GKH 601 A 1 HETATM 21 C CBM GKH . . . C 2 47.852 -6.944 47.595 1 24.14 ? CBM GKH 601 A 1 HETATM 22 C CAM GKH . . . C 2 47.8 -8.131 46.978 1 23.52 ? CAM GKH 601 A 1 HETATM 23 C CAN GKH . . . C 2 46.688 -8.572 46.321 1 22.92 ? CAN GKH 601 A 1 HETATM 24 O OBL GKH . . . C 2 46.715 -9.056 45.216 1 23.65 ? OBL GKH 601 A 1 HETATM 25 N NAO GKH . . . C 2 45.531 -8.497 46.927 1 22.98 ? NAO GKH 601 A 1 HETATM 26 S SAP GKH . . . C 2 44.158 -7.964 46.183 1 23.1 ? SAP GKH 601 A 1 HETATM 27 O OBJ GKH . . . C 2 43.282 -7.173 47.195 1 23.73 ? OBJ GKH 601 A 1 HETATM 28 O OBK GKH . . . C 2 44.412 -6.982 45.081 1 24.47 ? OBK GKH 601 A 1 HETATM 29 O O5' GKH . . . C 2 43.427 -9.2 45.62 1 22.52 ? O5' GKH 601 A 1 HETATM 30 C C5' GKH . . . C 2 43.021 -10.309 46.462 1 21.98 ? C5' GKH 601 A 1 HETATM 31 C C4' GKH . . . C 2 43.1 -11.618 45.71 1 21.5 ? C4' GKH 601 A 1 HETATM 32 O O4' GKH . . . C 2 44.297 -11.614 44.897 1 21.22 ? O4' GKH 601 A 1 HETATM 33 C C3' GKH . . . C 2 43.388 -12.796 46.631 1 21.44 ? C3' GKH 601 A 1 HETATM 34 O O3' GKH . . . C 2 42.287 -13.198 47.464 1 21.99 ? O3' GKH 601 A 1 HETATM 35 C C2' GKH . . . C 2 43.751 -13.826 45.525 1 21.01 ? C2' GKH 601 A 1 HETATM 36 O O2' GKH . . . C 2 42.618 -14.381 44.795 1 21 ? O2' GKH 601 A 1 HETATM 37 C C1' GKH . . . C 2 44.657 -12.997 44.577 1 19.86 ? C1' GKH 601 A 1 HETATM 38 C C8 GKH . . . C 2 47.105 -12.431 45.321 1 17.45 ? C8 GKH 601 A 1 HETATM 39 N N7 GKH . . . C 2 48.24 -13.111 45.414 1 17.07 ? N7 GKH 601 A 1 HETATM 40 N N3 GKH . . . C 2 46.15 -15.597 44.226 1 15.85 ? N3 GKH 601 A 1 HETATM 41 N N1 GKH . . . C 2 48.278 -16.631 44.475 1 15.71 ? N1 GKH 601 A 1 HETATM 42 N N6 GKH . . . C 2 50.041 -15.328 45.254 1 16.22 ? N6 GKH 601 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 61 _model_server_stats.query_time_ms 1242 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 42 #