data_6HPS # _model_server_result.job_id I9WTGhemWdlmPk3gSct7DA _model_server_result.datetime_utc '2025-01-10 03:14:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hps # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 6HPS # _exptl.entry_id 6HPS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 632.649 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[[2-[(~{E})-2-(6-oxidanyl-1,3-benzothiazol-2-yl)ethenyl]-1,3-thiazol-4-yl]carbonyl]sulfamate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.18 _cell.angle_gamma 90 _cell.entry_id 6HPS _cell.length_a 47.509 _cell.length_b 114.016 _cell.length_c 101.557 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HPS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C23 H20 N8 O8 S3' _chem_comp.formula_weight 632.649 _chem_comp.id GKH _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[[2-[(~{E})-2-(6-oxidanyl-1,3-benzothiazol-2-yl)ethenyl]-1,3-thiazol-4-yl]carbonyl]sulfamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N3 GKH doub 83 n y C2 N1 GKH sing 84 n y N3 C4 GKH sing 85 n y N1 C6 GKH doub 86 n y C1' N9 GKH sing 87 n n C1' O4' GKH sing 88 n n C1' C2' GKH sing 89 n n C4 N9 GKH sing 90 n y C4 C5 GKH doub 91 n y O2' C2' GKH sing 92 n n N9 C8 GKH sing 93 n y O4' C4' GKH sing 94 n n C6 C5 GKH sing 95 n y C6 N6 GKH sing 96 n n C5 N7 GKH sing 97 n y OBK SAP GKH doub 98 n n OBL CAN GKH doub 99 n n C8 N7 GKH doub 100 n y C2' C3' GKH sing 101 n n O5' SAP GKH sing 102 n n O5' C5' GKH sing 103 n n C4' C5' GKH sing 104 n n C4' C3' GKH sing 105 n n SAP NAO GKH sing 106 n n SAP OBJ GKH doub 107 n n CAN NAO GKH sing 108 n n CAN CAM GKH sing 109 n n C3' O3' GKH sing 110 n n SAG CAF GKH sing 111 n y SAG CAH GKH sing 112 n y CAM NAL GKH sing 113 n y CAM CBM GKH doub 114 n y CAI CAH GKH sing 115 n n CAI CAJ GKH doub 116 e n CBP CAF GKH doub 117 n y CBP CAB GKH sing 118 n y NAL CAK GKH doub 119 n y CAF CAE GKH sing 120 n y CAH NBO GKH doub 121 n y OAA CAB GKH sing 122 n n CBM SBN GKH sing 123 n y CAB CAC GKH doub 124 n y CAK CAJ GKH sing 125 n n CAK SBN GKH sing 126 n y CAE NBO GKH sing 127 n y CAE CAD GKH doub 128 n y CAC CAD GKH sing 129 n y C2 H1 GKH sing 130 n n CAD H2 GKH sing 131 n n CAC H3 GKH sing 132 n n OAA H4 GKH sing 133 n n CBP H5 GKH sing 134 n n CAI H6 GKH sing 135 n n CAJ H7 GKH sing 136 n n CBM H8 GKH sing 137 n n NAO H9 GKH sing 138 n n C5' H10 GKH sing 139 n n C5' H11 GKH sing 140 n n C4' H12 GKH sing 141 n n C3' H13 GKH sing 142 n n O3' H14 GKH sing 143 n n C2' H15 GKH sing 144 n n O2' H16 GKH sing 145 n n C1' H17 GKH sing 146 n n C8 H18 GKH sing 147 n n N6 H19 GKH sing 148 n n N6 H20 GKH sing 149 n n # _atom_sites.entry_id 6HPS _atom_sites.fract_transf_matrix[1][1] 0.021049 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003027 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GKH A 1 601 601 GKH PDB . D 2 GKH B 1 601 601 GKH PDB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 GKH . . . D 2 30.615 -11.365 -6.286 1 17.29 ? C2 GKH 601 B 1 HETATM 2 C C4 GKH . . . D 2 30.426 -9.153 -5.603 1 18.33 ? C4 GKH 601 B 1 HETATM 3 C C5 GKH . . . D 2 31.702 -9.125 -5.194 1 18.48 ? C5 GKH 601 B 1 HETATM 4 C C6 GKH . . . D 2 32.468 -10.209 -5.316 1 18.02 ? C6 GKH 601 B 1 HETATM 5 N N9 GKH . . . D 2 29.927 -7.962 -5.362 1 20.06 ? N9 GKH 601 B 1 HETATM 6 N NBO GKH . . . D 2 37.876 -3.618 -2.007 1 26.98 ? NBO GKH 601 B 1 HETATM 7 C CAE GKH . . . D 2 39.059 -4.317 -2.074 1 27.42 ? CAE GKH 601 B 1 HETATM 8 C CAD GKH . . . D 2 40.244 -4.103 -1.437 1 27.4 ? CAD GKH 601 B 1 HETATM 9 C CAC GKH . . . D 2 41.368 -4.943 -1.619 1 26.58 ? CAC GKH 601 B 1 HETATM 10 C CAB GKH . . . D 2 41.262 -6.031 -2.485 1 26.14 ? CAB GKH 601 B 1 HETATM 11 O OAA GKH . . . D 2 42.275 -6.89 -2.717 1 24.86 ? OAA GKH 601 B 1 HETATM 12 C CBP GKH . . . D 2 40.049 -6.223 -3.13 1 26.75 ? CBP GKH 601 B 1 HETATM 13 C CAF GKH . . . D 2 39.017 -5.393 -2.923 1 27.06 ? CAF GKH 601 B 1 HETATM 14 S SAG GKH . . . D 2 37.669 -5.476 -3.529 1 26.85 ? SAG GKH 601 B 1 HETATM 15 C CAH GKH . . . D 2 36.995 -4.202 -2.835 1 27.64 ? CAH GKH 601 B 1 HETATM 16 C CAI GKH . . . D 2 35.731 -3.893 -3.12 1 27.92 ? CAI GKH 601 B 1 HETATM 17 C CAJ GKH . . . D 2 34.98 -3.048 -2.137 1 27.96 ? CAJ GKH 601 B 1 HETATM 18 C CAK GKH . . . D 2 33.711 -2.761 -2.43 1 28.96 ? CAK GKH 601 B 1 HETATM 19 N NAL GKH . . . D 2 32.749 -3.382 -3.193 1 28.97 ? NAL GKH 601 B 1 HETATM 20 S SBN GKH . . . D 2 33.186 -1.541 -1.813 1 31.23 ? SBN GKH 601 B 1 HETATM 21 C CBM GKH . . . D 2 31.606 -1.596 -2.465 1 29.48 ? CBM GKH 601 B 1 HETATM 22 C CAM GKH . . . D 2 31.539 -2.711 -3.219 1 29.05 ? CAM GKH 601 B 1 HETATM 23 C CAN GKH . . . D 2 30.397 -3.099 -3.894 1 28.15 ? CAN GKH 601 B 1 HETATM 24 O OBL GKH . . . D 2 30.43 -3.676 -4.978 1 29.65 ? OBL GKH 601 B 1 HETATM 25 N NAO GKH . . . D 2 29.213 -2.941 -3.277 1 26.68 ? NAO GKH 601 B 1 HETATM 26 S SAP GKH . . . D 2 27.877 -2.566 -4.062 1 24.64 ? SAP GKH 601 B 1 HETATM 27 O OBJ GKH . . . D 2 26.975 -1.779 -3.14 1 25.89 ? OBJ GKH 601 B 1 HETATM 28 O OBK GKH . . . D 2 28.148 -1.665 -5.215 1 26.32 ? OBK GKH 601 B 1 HETATM 29 O O5' GKH . . . D 2 27.166 -3.815 -4.543 1 24.83 ? O5' GKH 601 B 1 HETATM 30 C C5' GKH . . . D 2 26.808 -4.929 -3.707 1 24.48 ? C5' GKH 601 B 1 HETATM 31 C C4' GKH . . . D 2 26.897 -6.215 -4.531 1 24.14 ? C4' GKH 601 B 1 HETATM 32 O O4' GKH . . . D 2 28.155 -6.211 -5.304 1 24.07 ? O4' GKH 601 B 1 HETATM 33 C C3' GKH . . . D 2 27.05 -7.467 -3.676 1 23.78 ? C3' GKH 601 B 1 HETATM 34 O O3' GKH . . . D 2 25.836 -7.895 -3.049 1 23.41 ? O3' GKH 601 B 1 HETATM 35 C C2' GKH . . . D 2 27.532 -8.445 -4.79 1 23.66 ? C2' GKH 601 B 1 HETATM 36 O O2' GKH . . . D 2 26.498 -8.968 -5.695 1 23.92 ? O2' GKH 601 B 1 HETATM 37 C C1' GKH . . . D 2 28.502 -7.597 -5.657 1 22.41 ? C1' GKH 601 B 1 HETATM 38 C C8 GKH . . . D 2 30.875 -7.197 -4.815 1 19.55 ? C8 GKH 601 B 1 HETATM 39 N N7 GKH . . . D 2 31.979 -7.913 -4.705 1 19.09 ? N7 GKH 601 B 1 HETATM 40 N N3 GKH . . . D 2 29.855 -10.235 -6.139 1 17.13 ? N3 GKH 601 B 1 HETATM 41 N N1 GKH . . . D 2 31.955 -11.33 -5.861 1 17.49 ? N1 GKH 601 B 1 HETATM 42 N N6 GKH . . . D 2 33.735 -10.088 -4.879 1 17.47 ? N6 GKH 601 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 487 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 42 #