data_6HPV
#
_model_server_result.job_id            vbcT0N_qhSIWd3GVyCX8Tw 
_model_server_result.datetime_utc      '2025-02-05 11:53:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hpv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    6HPV 
#
_exptl.entry_id    6HPV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6HPV 
_cell.length_a            67.71 
_cell.length_b            67.71 
_cell.length_c            197.81 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HPV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 21 A CYS 39 1_555 A SG CYS 356 A CYS 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 78 A CYS 96 1_555 A SG CYS 89 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 A SG CYS 102 A CYS 120 1_555 A SG CYS 122 A CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 A SG CYS 136 A CYS 154 1_555 A SG CYS 139 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf5 A SG CYS 219 A CYS 237 1_555 A SG CYS 245 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 A ND2 ASN 22 A ASN 40 1_555 B C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? 
covale ? covale2 A ND2 ASN 121 A ASN 139 1_555 C C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 243 n n 
C1 O1 NAG sing 244 n n 
C1 O5 NAG sing 245 n n 
C1 H1 NAG sing 246 n n 
C2 C3 NAG sing 247 n n 
C2 N2 NAG sing 248 n n 
C2 H2 NAG sing 249 n n 
C3 C4 NAG sing 250 n n 
C3 O3 NAG sing 251 n n 
C3 H3 NAG sing 252 n n 
C4 C5 NAG sing 253 n n 
C4 O4 NAG sing 254 n n 
C4 H4 NAG sing 255 n n 
C5 C6 NAG sing 256 n n 
C5 O5 NAG sing 257 n n 
C5 H5 NAG sing 258 n n 
C6 O6 NAG sing 259 n n 
C6 H61 NAG sing 260 n n 
C6 H62 NAG sing 261 n n 
C7 C8 NAG sing 262 n n 
C7 N2 NAG sing 263 n n 
C7 O7 NAG doub 264 n n 
C8 H81 NAG sing 265 n n 
C8 H82 NAG sing 266 n n 
C8 H83 NAG sing 267 n n 
N2 HN2 NAG sing 268 n n 
O1 HO1 NAG sing 269 n n 
O3 HO3 NAG sing 270 n n 
O4 HO4 NAG sing 271 n n 
O6 HO6 NAG sing 272 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6HPV 
_atom_sites.fract_transf_matrix[1][1]    0.014769 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014769 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005055 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 401 900 NAG NAG . 
C 2 NAG A 1 402 910 NAG NAG . 
D 3 ACT A 1 403 920 ACT ACT . 
E 4 HOH A 1 501 30 HOH HOH . 
E 4 HOH A 2 502 77 HOH HOH . 
E 4 HOH A 3 503 81 HOH HOH . 
E 4 HOH A 4 504 17 HOH HOH . 
E 4 HOH A 5 505 25 HOH HOH . 
E 4 HOH A 6 506 53 HOH HOH . 
E 4 HOH A 7 507 44 HOH HOH . 
E 4 HOH A 8 508 3 HOH HOH . 
E 4 HOH A 9 509 10 HOH HOH . 
E 4 HOH A 10 510 45 HOH HOH . 
E 4 HOH A 11 511 22 HOH HOH . 
E 4 HOH A 12 512 6 HOH HOH . 
E 4 HOH A 13 513 49 HOH HOH . 
E 4 HOH A 14 514 40 HOH HOH . 
E 4 HOH A 15 515 80 HOH HOH . 
E 4 HOH A 16 516 9 HOH HOH . 
E 4 HOH A 17 517 37 HOH HOH . 
E 4 HOH A 18 518 2 HOH HOH . 
E 4 HOH A 19 519 18 HOH HOH . 
E 4 HOH A 20 520 33 HOH HOH . 
E 4 HOH A 21 521 21 HOH HOH . 
E 4 HOH A 22 522 43 HOH HOH . 
E 4 HOH A 23 523 1 HOH HOH . 
E 4 HOH A 24 524 19 HOH HOH . 
E 4 HOH A 25 525 5 HOH HOH . 
E 4 HOH A 26 526 11 HOH HOH . 
E 4 HOH A 27 527 76 HOH HOH . 
E 4 HOH A 28 528 14 HOH HOH . 
E 4 HOH A 29 529 32 HOH HOH . 
E 4 HOH A 30 530 7 HOH HOH . 
E 4 HOH A 31 531 78 HOH HOH . 
E 4 HOH A 32 532 50 HOH HOH . 
E 4 HOH A 33 533 27 HOH HOH . 
E 4 HOH A 34 534 41 HOH HOH . 
E 4 HOH A 35 535 83 HOH HOH . 
E 4 HOH A 36 536 61 HOH HOH . 
E 4 HOH A 37 537 60 HOH HOH . 
E 4 HOH A 38 538 24 HOH HOH . 
E 4 HOH A 39 539 42 HOH HOH . 
E 4 HOH A 40 540 51 HOH HOH . 
E 4 HOH A 41 541 13 HOH HOH . 
E 4 HOH A 42 542 26 HOH HOH . 
E 4 HOH A 43 543 38 HOH HOH . 
E 4 HOH A 44 544 28 HOH HOH . 
E 4 HOH A 45 545 58 HOH HOH . 
E 4 HOH A 46 546 71 HOH HOH . 
E 4 HOH A 47 547 68 HOH HOH . 
E 4 HOH A 48 548 75 HOH HOH . 
E 4 HOH A 49 549 55 HOH HOH . 
E 4 HOH A 50 550 4 HOH HOH . 
E 4 HOH A 51 551 15 HOH HOH . 
E 4 HOH A 52 552 73 HOH HOH . 
E 4 HOH A 53 553 63 HOH HOH . 
E 4 HOH A 54 554 8 HOH HOH . 
E 4 HOH A 55 555 74 HOH HOH . 
E 4 HOH A 56 556 66 HOH HOH . 
E 4 HOH A 57 557 54 HOH HOH . 
E 4 HOH A 58 558 12 HOH HOH . 
E 4 HOH A 59 559 64 HOH HOH . 
E 4 HOH A 60 560 35 HOH HOH . 
E 4 HOH A 61 561 69 HOH HOH . 
E 4 HOH A 62 562 34 HOH HOH . 
E 4 HOH A 63 563 36 HOH HOH . 
E 4 HOH A 64 564 59 HOH HOH . 
E 4 HOH A 65 565 16 HOH HOH . 
E 4 HOH A 66 566 84 HOH HOH . 
E 4 HOH A 67 567 31 HOH HOH . 
E 4 HOH A 68 568 85 HOH HOH . 
E 4 HOH A 69 569 70 HOH HOH . 
E 4 HOH A 70 570 62 HOH HOH . 
E 4 HOH A 71 571 29 HOH HOH . 
E 4 HOH A 72 572 48 HOH HOH . 
E 4 HOH A 73 573 82 HOH HOH . 
E 4 HOH A 74 574 72 HOH HOH . 
E 4 HOH A 75 575 47 HOH HOH . 
E 4 HOH A 76 576 79 HOH HOH . 
E 4 HOH A 77 577 56 HOH HOH . 
E 4 HOH A 78 578 57 HOH HOH . 
E 4 HOH A 79 579 46 HOH HOH . 
E 4 HOH A 80 580 39 HOH HOH . 
E 4 HOH A 81 581 20 HOH HOH . 
E 4 HOH A 82 582 52 HOH HOH . 
E 4 HOH A 83 583 67 HOH HOH . 
E 4 HOH A 84 584 23 HOH HOH . 
E 4 HOH A 85 585 65 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 2 6.512 34.435 90.36 1 61.34 ? C1 NAG 402 A 1 
HETATM 2 C C2 NAG . . . C 2 5.83 34.78 91.684 1 64.45 ? C2 NAG 402 A 1 
HETATM 3 C C3 NAG . . . C 2 5.916 36.28 91.95 1 70.87 ? C3 NAG 402 A 1 
HETATM 4 C C4 NAG . . . C 2 7.362 36.751 91.882 1 71.66 ? C4 NAG 402 A 1 
HETATM 5 C C5 NAG . . . C 2 7.983 36.342 90.551 1 69.25 ? C5 NAG 402 A 1 
HETATM 6 C C6 NAG . . . C 2 9.459 36.652 90.474 1 71.01 ? C6 NAG 402 A 1 
HETATM 7 C C7 NAG . . . C 2 3.865 33.776 92.76 1 61.29 ? C7 NAG 402 A 1 
HETATM 8 C C8 NAG . . . C 2 2.422 33.398 92.603 1 60.4 ? C8 NAG 402 A 1 
HETATM 9 N N2 NAG . . . C 2 4.443 34.343 91.695 1 63.01 ? N2 NAG 402 A 1 
HETATM 10 O O3 NAG . . . C 2 5.373 36.563 93.234 1 74.79 ? O3 NAG 402 A 1 
HETATM 11 O O4 NAG . . . C 2 7.422 38.167 92.008 1 75.25 ? O4 NAG 402 A 1 
HETATM 12 O O5 NAG . . . C 2 7.854 34.925 90.367 1 63.46 ? O5 NAG 402 A 1 
HETATM 13 O O6 NAG . . . C 2 9.969 36.429 89.166 1 71.07 ? O6 NAG 402 A 1 
HETATM 14 O O7 NAG . . . C 2 4.48 33.578 93.804 1 60.19 ? O7 NAG 402 A 1 
HETATM 15 H H1 NAG . . . C 2 6.021 34.852 89.627 1 73.65 ? H1 NAG 402 A 1 
HETATM 16 H H2 NAG . . . C 2 6.308 34.317 92.398 1 77.38 ? H2 NAG 402 A 1 
HETATM 17 H H3 NAG . . . C 2 5.397 36.754 91.272 1 85.08 ? H3 NAG 402 A 1 
HETATM 18 H H4 NAG . . . C 2 7.864 36.343 92.612 1 86.03 ? H4 NAG 402 A 1 
HETATM 19 H H5 NAG . . . C 2 7.516 36.802 89.828 1 83.14 ? H5 NAG 402 A 1 
HETATM 20 H H61 NAG . . . C 2 9.938 36.081 91.104 1 85.25 ? H61 NAG 402 A 1 
HETATM 21 H H62 NAG . . . C 2 9.602 37.586 90.717 1 85.25 ? H62 NAG 402 A 1 
HETATM 22 H H81 NAG . . . C 2 2.271 33.06 91.7 1 72.52 ? H81 NAG 402 A 1 
HETATM 23 H H82 NAG . . . C 2 1.862 34.182 92.754 1 72.52 ? H82 NAG 402 A 1 
HETATM 24 H H83 NAG . . . C 2 2.195 32.705 93.252 1 72.52 ? H83 NAG 402 A 1 
HETATM 25 H HN2 NAG . . . C 2 3.944 34.461 90.941 1 75.65 ? HN2 NAG 402 A 1 
HETATM 26 H HO3 NAG . . . C 2 5.411 37.437 93.386 1 89.79 ? HO3 NAG 402 A 1 
HETATM 27 H HO4 NAG . . . C 2 8.195 38.399 92.377 1 90.34 ? HO4 NAG 402 A 1 
HETATM 28 H HO6 NAG . . . C 2 10.849 36.545 89.168 1 85.33 ? HO6 NAG 402 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           28 
#