data_6HPV # _model_server_result.job_id ZLjNP9cJnexnbIMndWalhg _model_server_result.datetime_utc '2025-02-05 12:00:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hpv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 6HPV # _exptl.entry_id 6HPV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HPV _cell.length_a 67.71 _cell.length_b 67.71 _cell.length_c 197.81 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HPV _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 21 A CYS 39 1_555 A SG CYS 356 A CYS 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 78 A CYS 96 1_555 A SG CYS 89 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 102 A CYS 120 1_555 A SG CYS 122 A CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 136 A CYS 154 1_555 A SG CYS 139 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 219 A CYS 237 1_555 A SG CYS 245 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 22 A ASN 40 1_555 B C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale2 A ND2 ASN 121 A ASN 139 1_555 C C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 6HPV _atom_sites.fract_transf_matrix[1][1] 0.014769 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014769 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 401 900 NAG NAG . C 2 NAG A 1 402 910 NAG NAG . D 3 ACT A 1 403 920 ACT ACT . E 4 HOH A 1 501 30 HOH HOH . E 4 HOH A 2 502 77 HOH HOH . E 4 HOH A 3 503 81 HOH HOH . E 4 HOH A 4 504 17 HOH HOH . E 4 HOH A 5 505 25 HOH HOH . E 4 HOH A 6 506 53 HOH HOH . E 4 HOH A 7 507 44 HOH HOH . E 4 HOH A 8 508 3 HOH HOH . E 4 HOH A 9 509 10 HOH HOH . E 4 HOH A 10 510 45 HOH HOH . E 4 HOH A 11 511 22 HOH HOH . E 4 HOH A 12 512 6 HOH HOH . E 4 HOH A 13 513 49 HOH HOH . E 4 HOH A 14 514 40 HOH HOH . E 4 HOH A 15 515 80 HOH HOH . E 4 HOH A 16 516 9 HOH HOH . E 4 HOH A 17 517 37 HOH HOH . E 4 HOH A 18 518 2 HOH HOH . E 4 HOH A 19 519 18 HOH HOH . E 4 HOH A 20 520 33 HOH HOH . E 4 HOH A 21 521 21 HOH HOH . E 4 HOH A 22 522 43 HOH HOH . E 4 HOH A 23 523 1 HOH HOH . E 4 HOH A 24 524 19 HOH HOH . E 4 HOH A 25 525 5 HOH HOH . E 4 HOH A 26 526 11 HOH HOH . E 4 HOH A 27 527 76 HOH HOH . E 4 HOH A 28 528 14 HOH HOH . E 4 HOH A 29 529 32 HOH HOH . E 4 HOH A 30 530 7 HOH HOH . E 4 HOH A 31 531 78 HOH HOH . E 4 HOH A 32 532 50 HOH HOH . E 4 HOH A 33 533 27 HOH HOH . E 4 HOH A 34 534 41 HOH HOH . E 4 HOH A 35 535 83 HOH HOH . E 4 HOH A 36 536 61 HOH HOH . E 4 HOH A 37 537 60 HOH HOH . E 4 HOH A 38 538 24 HOH HOH . E 4 HOH A 39 539 42 HOH HOH . E 4 HOH A 40 540 51 HOH HOH . E 4 HOH A 41 541 13 HOH HOH . E 4 HOH A 42 542 26 HOH HOH . E 4 HOH A 43 543 38 HOH HOH . E 4 HOH A 44 544 28 HOH HOH . E 4 HOH A 45 545 58 HOH HOH . E 4 HOH A 46 546 71 HOH HOH . E 4 HOH A 47 547 68 HOH HOH . E 4 HOH A 48 548 75 HOH HOH . E 4 HOH A 49 549 55 HOH HOH . E 4 HOH A 50 550 4 HOH HOH . E 4 HOH A 51 551 15 HOH HOH . E 4 HOH A 52 552 73 HOH HOH . E 4 HOH A 53 553 63 HOH HOH . E 4 HOH A 54 554 8 HOH HOH . E 4 HOH A 55 555 74 HOH HOH . E 4 HOH A 56 556 66 HOH HOH . E 4 HOH A 57 557 54 HOH HOH . E 4 HOH A 58 558 12 HOH HOH . E 4 HOH A 59 559 64 HOH HOH . E 4 HOH A 60 560 35 HOH HOH . E 4 HOH A 61 561 69 HOH HOH . E 4 HOH A 62 562 34 HOH HOH . E 4 HOH A 63 563 36 HOH HOH . E 4 HOH A 64 564 59 HOH HOH . E 4 HOH A 65 565 16 HOH HOH . E 4 HOH A 66 566 84 HOH HOH . E 4 HOH A 67 567 31 HOH HOH . E 4 HOH A 68 568 85 HOH HOH . E 4 HOH A 69 569 70 HOH HOH . E 4 HOH A 70 570 62 HOH HOH . E 4 HOH A 71 571 29 HOH HOH . E 4 HOH A 72 572 48 HOH HOH . E 4 HOH A 73 573 82 HOH HOH . E 4 HOH A 74 574 72 HOH HOH . E 4 HOH A 75 575 47 HOH HOH . E 4 HOH A 76 576 79 HOH HOH . E 4 HOH A 77 577 56 HOH HOH . E 4 HOH A 78 578 57 HOH HOH . E 4 HOH A 79 579 46 HOH HOH . E 4 HOH A 80 580 39 HOH HOH . E 4 HOH A 81 581 20 HOH HOH . E 4 HOH A 82 582 52 HOH HOH . E 4 HOH A 83 583 67 HOH HOH . E 4 HOH A 84 584 23 HOH HOH . E 4 HOH A 85 585 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . D 3 -5.992 12.813 82.728 0.82 54.98 ? C ACT 403 A 1 HETATM 2 O O ACT . . . D 3 -6.767 13.629 82.156 0.82 57.46 ? O ACT 403 A 1 HETATM 3 O OXT ACT . . . D 3 -5.82 12.622 83.962 0.82 56.58 ? OXT ACT 403 A 1 HETATM 4 C CH3 ACT . . . D 3 -5.119 11.912 81.802 0.82 51.1 ? CH3 ACT 403 A 1 HETATM 5 H H1 ACT . . . D 3 -4.639 12.468 81.168 0.82 61.36 ? H1 ACT 403 A 1 HETATM 6 H H2 ACT . . . D 3 -5.692 11.294 81.321 0.82 61.36 ? H2 ACT 403 A 1 HETATM 7 H H3 ACT . . . D 3 -4.485 11.414 82.341 0.82 61.36 ? H3 ACT 403 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #