data_6HPX # _model_server_result.job_id n72jyi5-xjZPAzwFFyf5lA _model_server_result.datetime_utc '2024-11-23 22:29:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hpx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 6HPX # _exptl.entry_id 6HPX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 382.887 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[(3-chlorophenyl)methyl]-1-(2-pyrrolidin-1-ylethyl)benzimidazole-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HPX _cell.length_a 48.35 _cell.length_b 48.35 _cell.length_c 137.415 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HPX _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H23 Cl N4 O' _chem_comp.formula_weight 382.887 _chem_comp.id GKQ _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[(3-chlorophenyl)methyl]-1-(2-pyrrolidin-1-ylethyl)benzimidazole-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C8 GKQ sing 92 n n C6 C5 GKQ sing 93 n n C8 C7 GKQ sing 94 n n C5 N2 GKQ sing 95 n n C7 N2 GKQ sing 96 n n N2 C4 GKQ sing 97 n n C4 C3 GKQ sing 98 n n C3 N1 GKQ sing 99 n n C9 C1 GKQ doub 100 n y C9 C20 GKQ sing 101 n y N1 C1 GKQ sing 102 n y N1 C2 GKQ sing 103 n y C1 C GKQ sing 104 n y C20 C11 GKQ doub 105 n y C2 N GKQ doub 106 n y O C12 GKQ doub 107 n n C N GKQ sing 108 n y C C10 GKQ doub 109 n y C11 C10 GKQ sing 110 n y C11 C12 GKQ sing 111 n n C12 N3 GKQ sing 112 n n N3 C13 GKQ sing 113 n n C13 C14 GKQ sing 114 n n C14 C15 GKQ doub 115 n y C14 C17 GKQ sing 116 n y C15 C16 GKQ sing 117 n y C17 C18 GKQ doub 118 n y C16 CL GKQ sing 119 n n C16 C19 GKQ doub 120 n y C18 C19 GKQ sing 121 n y C2 H1 GKQ sing 122 n n C3 H2 GKQ sing 123 n n C3 H3 GKQ sing 124 n n N3 H4 GKQ sing 125 n n C13 H5 GKQ sing 126 n n C13 H6 GKQ sing 127 n n C17 H7 GKQ sing 128 n n C18 H8 GKQ sing 129 n n C19 H9 GKQ sing 130 n n C15 H10 GKQ sing 131 n n C10 H11 GKQ sing 132 n n C20 H12 GKQ sing 133 n n C9 H13 GKQ sing 134 n n C4 H14 GKQ sing 135 n n C4 H15 GKQ sing 136 n n C7 H17 GKQ sing 137 n n C7 H18 GKQ sing 138 n n C8 H19 GKQ sing 139 n n C8 H20 GKQ sing 140 n n C6 H21 GKQ sing 141 n n C6 H22 GKQ sing 142 n n C5 H23 GKQ sing 143 n n C5 H24 GKQ sing 144 n n # _atom_sites.entry_id 6HPX _atom_sites.fract_transf_matrix[1][1] 0.020683 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007277 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 151 EDO EDO . C 2 EDO A 1 202 152 EDO EDO . D 2 EDO A 1 203 153 EDO EDO . E 2 EDO A 1 204 154 EDO EDO . F 3 GKQ A 1 205 1 GKQ FFM . G 4 HOH A 1 301 10 HOH HOH . G 4 HOH A 2 302 21 HOH HOH . G 4 HOH A 3 303 36 HOH HOH . G 4 HOH A 4 304 5 HOH HOH . G 4 HOH A 5 305 14 HOH HOH . G 4 HOH A 6 306 11 HOH HOH . G 4 HOH A 7 307 17 HOH HOH . G 4 HOH A 8 308 12 HOH HOH . G 4 HOH A 9 309 8 HOH HOH . G 4 HOH A 10 310 13 HOH HOH . G 4 HOH A 11 311 18 HOH HOH . G 4 HOH A 12 312 22 HOH HOH . G 4 HOH A 13 313 16 HOH HOH . G 4 HOH A 14 314 23 HOH HOH . G 4 HOH A 15 315 7 HOH HOH . G 4 HOH A 16 316 9 HOH HOH . G 4 HOH A 17 317 2 HOH HOH . G 4 HOH A 18 318 29 HOH HOH . G 4 HOH A 19 319 28 HOH HOH . G 4 HOH A 20 320 3 HOH HOH . G 4 HOH A 21 321 19 HOH HOH . G 4 HOH A 22 322 27 HOH HOH . G 4 HOH A 23 323 20 HOH HOH . G 4 HOH A 24 324 32 HOH HOH . G 4 HOH A 25 325 30 HOH HOH . G 4 HOH A 26 326 26 HOH HOH . G 4 HOH A 27 327 4 HOH HOH . G 4 HOH A 28 328 6 HOH HOH . G 4 HOH A 29 329 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C GKQ . . . F 3 3.143 16.802 12.925 1 55.24 ? C GKQ 205 A 1 HETATM 2 N N GKQ . . . F 3 4.173 17.697 13.219 1 60.54 ? N GKQ 205 A 1 HETATM 3 O O GKQ . . . F 3 -1.299 15.45 12.718 1 47.8 ? O GKQ 205 A 1 HETATM 4 C C1 GKQ . . . F 3 3.528 15.957 11.889 1 62.49 ? C1 GKQ 205 A 1 HETATM 5 C C2 GKQ . . . F 3 5.128 17.378 12.383 1 60.18 ? C2 GKQ 205 A 1 HETATM 6 C C3 GKQ . . . F 3 5.707 15.689 10.596 1 64.89 ? C3 GKQ 205 A 1 HETATM 7 C C12 GKQ . . . F 3 -0.371 15.55 13.518 1 53.38 ? C12 GKQ 205 A 1 HETATM 8 N N3 GKQ . . . F 3 -0.567 15.601 14.841 1 53.36 ? N3 GKQ 205 A 1 HETATM 9 C C13 GKQ . . . F 3 -1.873 15.887 15.422 1 54.06 ? C13 GKQ 205 A 1 HETATM 10 C C14 GKQ . . . F 3 -1.802 16.748 16.658 1 57.65 ? C14 GKQ 205 A 1 HETATM 11 C C17 GKQ . . . F 3 -2.662 16.532 17.734 1 58.15 ? C17 GKQ 205 A 1 HETATM 12 C C18 GKQ . . . F 3 -2.605 17.336 18.861 1 57.52 ? C18 GKQ 205 A 1 HETATM 13 C C19 GKQ . . . F 3 -1.689 18.373 18.936 1 59.14 ? C19 GKQ 205 A 1 HETATM 14 C C16 GKQ . . . F 3 -0.845 18.59 17.861 1 60.14 ? C16 GKQ 205 A 1 HETATM 15 CL CL GKQ . . . F 3 0.288 19.922 17.914 1 57.62 ? CL GKQ 205 A 1 HETATM 16 C C15 GKQ . . . F 3 -0.886 17.793 16.733 1 55.83 ? C15 GKQ 205 A 1 HETATM 17 C C11 GKQ . . . F 3 1.043 15.637 13.04 1 58.01 ? C11 GKQ 205 A 1 HETATM 18 C C10 GKQ . . . F 3 1.889 16.646 13.513 1 55.08 ? C10 GKQ 205 A 1 HETATM 19 C C20 GKQ . . . F 3 1.473 14.778 12.018 1 60.94 ? C20 GKQ 205 A 1 HETATM 20 C C9 GKQ . . . F 3 2.713 14.94 11.422 1 63.63 ? C9 GKQ 205 A 1 HETATM 21 N N1 GKQ . . . F 3 4.82 16.344 11.56 1 62.1 ? N1 GKQ 205 A 1 HETATM 22 C C4 GKQ . . . F 3 5.759 16.443 9.291 1 71.43 ? C4 GKQ 205 A 1 HETATM 23 N N2 GKQ . . . F 3 6.714 15.855 8.352 1 76.8 ? N2 GKQ 205 A 1 HETATM 24 C C7 GKQ . . . F 3 6.159 14.745 7.569 1 79.8 ? C7 GKQ 205 A 1 HETATM 25 C C8 GKQ . . . F 3 7.194 14.514 6.483 1 81.96 ? C8 GKQ 205 A 1 HETATM 26 C C6 GKQ . . . F 3 7.869 15.894 6.301 1 83.7 ? C6 GKQ 205 A 1 HETATM 27 C C5 GKQ . . . F 3 7.208 16.793 7.341 1 80.12 ? C5 GKQ 205 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 547 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #