data_6HQ7 # _model_server_result.job_id oehbzBEwhClMbfB868xY1Q _model_server_result.datetime_utc '2024-10-25 20:31:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hq7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":901}' # _entry.id 6HQ7 # _exptl.entry_id 6HQ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 345.205 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYCLIC GUANOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6HQ7 _cell.length_a 82.57 _cell.length_b 82.57 _cell.length_c 134.59 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HQ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 173 A GLU 178 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc2 A OE1 GLU 272 A GLU 277 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc3 A OD1 ASP 301 A ASP 306 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc4 B OE2 GLU 173 B GLU 178 1_555 F MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc5 B OE1 GLU 272 B GLU 277 1_555 F MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc6 B OD1 ASP 301 B ASP 306 1_555 F MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc7 B OD2 ASP 301 B ASP 306 1_555 F MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? # _chem_comp.formula 'C10 H12 N5 O7 P' _chem_comp.formula_weight 345.205 _chem_comp.id PCG _chem_comp.mon_nstd_flag . _chem_comp.name 'CYCLIC GUANOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A PCG sing 237 n n PA O2A PCG doub 238 n n PA O5' PCG sing 239 n n PA O3' PCG sing 240 n n O1A HO1A PCG sing 241 n n O5' C5' PCG sing 242 n n C5' C4' PCG sing 243 n n C5' "H5'1" PCG sing 244 n n C5' "H5'2" PCG sing 245 n n C4' O4' PCG sing 246 n n C4' C3' PCG sing 247 n n C4' H4' PCG sing 248 n n O4' C1' PCG sing 249 n n C3' O3' PCG sing 250 n n C3' C2' PCG sing 251 n n C3' H3' PCG sing 252 n n C2' O2' PCG sing 253 n n C2' C1' PCG sing 254 n n C2' H2' PCG sing 255 n n O2' HO2' PCG sing 256 n n C1' N9 PCG sing 257 n n C1' H1' PCG sing 258 n n N9 C8 PCG sing 259 n y N9 C4 PCG sing 260 n y C8 N7 PCG doub 261 n y C8 H8 PCG sing 262 n n N7 C5 PCG sing 263 n y C5 C6 PCG sing 264 n n C5 C4 PCG doub 265 n y C6 O6 PCG doub 266 n n C6 N1 PCG sing 267 n n N1 C2 PCG sing 268 n n N1 HN1 PCG sing 269 n n C2 N2 PCG sing 270 n n C2 N3 PCG doub 271 n n N2 HN21 PCG sing 272 n n N2 HN22 PCG sing 273 n n N3 C4 PCG sing 274 n n # _atom_sites.entry_id 6HQ7 _atom_sites.fract_transf_matrix[1][1] 0.012111 _atom_sites.fract_transf_matrix[1][2] 0.006992 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013985 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00743 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PCG A 1 901 901 PCG PCG . D 3 MG A 1 902 2 MG MG . E 2 PCG B 1 901 901 PCG PCG . F 3 MG B 1 902 1 MG MG . G 4 HOH A 1 1001 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA PCG . . . E 2 35.467 25.848 11.814 1 72.29 ? PA PCG 901 B 1 HETATM 2 O O1A PCG . . . E 2 35.379 24.361 12.024 1 79.46 ? O1A PCG 901 B 1 HETATM 3 O O2A PCG . . . E 2 35.266 26.34 10.41 1 71.57 ? O2A PCG 901 B 1 HETATM 4 O O5' PCG . . . E 2 36.889 26.428 12.325 1 75.16 ? O5' PCG 901 B 1 HETATM 5 C C5' PCG . . . E 2 37.035 27.823 12.636 1 75.95 ? C5' PCG 901 B 1 HETATM 6 C C4' PCG . . . E 2 35.958 28.165 13.657 1 73.14 ? C4' PCG 901 B 1 HETATM 7 O O4' PCG . . . E 2 35.917 29.5 14.159 1 68.26 ? O4' PCG 901 B 1 HETATM 8 C C3' PCG . . . E 2 34.594 27.969 13.035 1 71.55 ? C3' PCG 901 B 1 HETATM 9 O O3' PCG . . . E 2 34.422 26.573 12.815 1 71.65 ? O3' PCG 901 B 1 HETATM 10 C C2' PCG . . . E 2 33.711 28.64 14.061 1 68.96 ? C2' PCG 901 B 1 HETATM 11 O O2' PCG . . . E 2 33.396 27.722 15.101 1 68.71 ? O2' PCG 901 B 1 HETATM 12 C C1' PCG . . . E 2 34.581 29.757 14.634 1 70.02 ? C1' PCG 901 B 1 HETATM 13 N N9 PCG . . . E 2 34.14 31.125 14.227 1 68.68 ? N9 PCG 901 B 1 HETATM 14 C C8 PCG . . . E 2 33.94 32.159 15.079 1 69.63 ? C8 PCG 901 B 1 HETATM 15 N N7 PCG . . . E 2 33.572 33.285 14.402 1 69.64 ? N7 PCG 901 B 1 HETATM 16 C C5 PCG . . . E 2 33.534 32.972 13.091 1 60.53 ? C5 PCG 901 B 1 HETATM 17 C C6 PCG . . . E 2 33.213 33.677 11.831 1 63.82 ? C6 PCG 901 B 1 HETATM 18 O O6 PCG . . . E 2 32.877 34.876 11.852 1 75.41 ? O6 PCG 901 B 1 HETATM 19 N N1 PCG . . . E 2 33.292 33 10.668 1 66.34 ? N1 PCG 901 B 1 HETATM 20 C C2 PCG . . . E 2 33.657 31.69 10.631 1 62.15 ? C2 PCG 901 B 1 HETATM 21 N N2 PCG . . . E 2 33.732 31.042 9.438 1 58.98 ? N2 PCG 901 B 1 HETATM 22 N N3 PCG . . . E 2 33.951 30.987 11.757 1 58.25 ? N3 PCG 901 B 1 HETATM 23 C C4 PCG . . . E 2 33.913 31.555 12.982 1 57.6 ? C4 PCG 901 B 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #