data_6HQB # _model_server_result.job_id lPbdVXTsaUFEHFDR1BBzww _model_server_result.datetime_utc '2024-11-15 13:38:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hqb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AB","auth_seq_id":2001}' # _entry.id 6HQB # _exptl.entry_id 6HQB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 450.696 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHYLLOQUINONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HQB _cell.length_a 124.322 _cell.length_b 178.658 _cell.length_c 181.446 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HQB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details undecameric _pdbx_struct_assembly.oligomeric_count 11 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD,PD,QD,RD,SD,TD,UD,VD,WD,XD,YD,ZD,AE,BE,CE,DE,EE,FE,GE,HE,IE,JE,KE _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 13 AB N N ? 13 DD N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 123 A GLN 123 1_555 T MG CLA . A CLA 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc2 A OD1 ASP 469 A ASP 469 1_555 IE CA CA . L CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.152 ? metalc ? metalc3 A O THR 497 A THR 497 1_555 SA MG CLA . A CLA 1134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? metalc ? metalc4 B OE2 GLU 134 B GLU 134 1_555 PD CA CA . B CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc5 B OE1 GLU 201 B GLU 201 1_555 PD CA CA . B CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? covale ? covale1 B CA SER 481 B SER 481 1_555 ND C1 LHG . B LHG 5006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? covale ? covale2 B N ILE 482 B ILE 482 1_555 ND O2 LHG . B LHG 5006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? metalc ? metalc6 H OE2 GLU 28 J GLU 28 1_555 DE MG CLA . J CLA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.994 ? covale ? covale3 J N PRO 49 L PRO 70 1_555 LB O1D CLA . A CLA 1132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? metalc ? metalc7 J O PRO 49 L PRO 70 1_555 IE CA CA . L CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc8 J OD1 ASP 52 L ASP 73 1_555 IE CA CA . L CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc9 O O1A CLA . A CLA 1102 1_555 V MG CLA . A CLA 1109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? covale ? covale4 J CG2 ILE 130 L ILE 151 1_555 CE CMB CLA . J CLA 1303 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale5 J CD ARG 132 L ARG 153 1_555 VD C3 CLA . F CLA 1302 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 ? # _chem_comp.formula 'C31 H46 O2' _chem_comp.formula_weight 450.696 _chem_comp.id PQN _chem_comp.mon_nstd_flag . _chem_comp.name PHYLLOQUINONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN K1;2-METHYL-3-PHYTYL-1,4-NAPHTHOQUINONE' # _atom_sites.entry_id 6HQB _atom_sites.fract_transf_matrix[1][1] 0.008044 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005597 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005511 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 12 CLA A 1 1011 1011 CLA CLA . M 12 CLA A 1 1012 1012 CLA CLA . N 12 CLA A 1 1013 1013 CLA CLA . O 12 CLA A 1 1102 1102 CLA CLA . P 12 CLA A 1 1103 1103 CLA CLA . Q 12 CLA A 1 1104 1104 CLA CLA . R 12 CLA A 1 1105 1105 CLA CLA . S 12 CLA A 1 1106 1106 CLA CLA . T 12 CLA A 1 1107 1107 CLA CLA . U 12 CLA A 1 1108 1108 CLA CLA . V 12 CLA A 1 1109 1109 CLA CLA . W 12 CLA A 1 1110 1110 CLA CLA . X 12 CLA A 1 1111 1111 CLA CLA . Y 12 CLA A 1 1112 1112 CLA CLA . Z 12 CLA A 1 1113 1113 CLA CLA . AA 12 CLA A 1 1114 1114 CLA CLA . BA 12 CLA A 1 1115 1115 CLA CLA . CA 12 CLA A 1 1116 1116 CLA CLA . DA 12 CLA A 1 1117 1117 CLA CLA . EA 12 CLA A 1 1118 1118 CLA CLA . FA 12 CLA A 1 1119 1119 CLA CLA . GA 12 CLA A 1 1120 1120 CLA CLA . HA 12 CLA A 1 1121 1121 CLA CLA . IA 12 CLA A 1 1122 1122 CLA CLA . JA 12 CLA A 1 1123 1123 CLA CLA . KA 12 CLA A 1 1124 1124 CLA CLA . LA 12 CLA A 1 1125 1125 CLA CLA . MA 12 CLA A 1 1126 1126 CLA CLA . NA 12 CLA A 1 1127 1127 CLA CLA . OA 12 CLA A 1 1128 1128 CLA CLA . PA 12 CLA A 1 1129 1129 CLA CLA . QA 12 CLA A 1 1131 1131 CLA CLA . RA 12 CLA A 1 1133 1133 CLA CLA . SA 12 CLA A 1 1134 1134 CLA CLA . TA 12 CLA A 1 1135 1135 CLA CLA . UA 12 CLA A 1 1136 1136 CLA CLA . VA 12 CLA A 1 1137 1137 CLA CLA . WA 12 CLA A 1 1138 1138 CLA CLA . XA 12 CLA A 1 1139 1139 CLA CLA . YA 12 CLA A 1 1140 1140 CLA CLA . ZA 12 CLA A 1 1141 1141 CLA CLA . AB 13 PQN A 1 2001 2001 PQN PQN . BB 14 SF4 A 1 3001 3001 SF4 SF4 . CB 15 BCR A 1 4001 4001 BCR BCR . DB 15 BCR A 1 4003 4003 BCR BCR . EB 15 BCR A 1 4007 4007 BCR BCR . FB 15 BCR A 1 4008 4008 BCR BCR . GB 16 LHG A 1 5001 5001 LHG LHG . HB 16 LHG A 1 5003 5003 LHG LHG . IB 12 CLA A 1 1101 1101 CLA CLA . JB 15 BCR A 1 4012 4012 BCR BCR . KB 12 CLA A 1 1130 1130 CLA CLA . LB 12 CLA A 1 1132 1132 CLA CLA . MB 12 CLA B 1 1237 1237 CLA CLA . NB 17 45D B 1 4011 4011 45D 45D . OB 18 CL B 1 6000 6000 CL CL . PB 12 CLA B 1 1021 1021 CLA CLA . QB 12 CLA B 1 1022 1022 CLA CLA . RB 12 CLA B 1 1023 1023 CLA CLA . SB 12 CLA B 1 1201 1201 CLA CLA . TB 12 CLA B 1 1202 1202 CLA CLA . UB 12 CLA B 1 1203 1203 CLA CLA . VB 12 CLA B 1 1204 1204 CLA CLA . WB 12 CLA B 1 1205 1205 CLA CLA . XB 12 CLA B 1 1206 1206 CLA CLA . YB 12 CLA B 1 1207 1207 CLA CLA . ZB 12 CLA B 1 1208 1208 CLA CLA . AC 12 CLA B 1 1209 1209 CLA CLA . BC 12 CLA B 1 1210 1210 CLA CLA . CC 12 CLA B 1 1211 1211 CLA CLA . DC 12 CLA B 1 1212 1212 CLA CLA . EC 12 CLA B 1 1213 1213 CLA CLA . FC 12 CLA B 1 1214 1214 CLA CLA . GC 12 CLA B 1 1215 1215 CLA CLA . HC 12 CLA B 1 1216 1216 CLA CLA . IC 12 CLA B 1 1217 1217 CLA CLA . JC 12 CLA B 1 1218 1218 CLA CLA . KC 12 CLA B 1 1219 1219 CLA CLA . LC 12 CLA B 1 1220 1220 CLA CLA . MC 12 CLA B 1 1221 1221 CLA CLA . NC 12 CLA B 1 1222 1222 CLA CLA . OC 12 CLA B 1 1223 1223 CLA CLA . PC 12 CLA B 1 1224 1224 CLA CLA . QC 12 CLA B 1 1225 1225 CLA CLA . RC 12 CLA B 1 1226 1226 CLA CLA . SC 12 CLA B 1 1227 1227 CLA CLA . TC 12 CLA B 1 1228 1228 CLA CLA . UC 12 CLA B 1 1229 1229 CLA CLA . VC 12 CLA B 1 1230 1230 CLA CLA . WC 12 CLA B 1 1231 1231 CLA CLA . XC 12 CLA B 1 1232 1232 CLA CLA . YC 12 CLA B 1 1234 1234 CLA CLA . ZC 12 CLA B 1 1235 1235 CLA CLA . AD 12 CLA B 1 1236 1236 CLA CLA . BD 12 CLA B 1 1239 1239 CLA CLA . CD 12 CLA B 1 1240 1240 CLA CLA . DD 13 PQN B 1 2002 2002 PQN PQN . ED 15 BCR B 1 4004 4004 BCR BCR . FD 15 BCR B 1 4005 4005 BCR BCR . GD 19 ECH B 1 4006 4006 ECH ECH . HD 15 BCR B 1 4010 4010 BCR BCR . ID 15 BCR B 1 4017 4017 BCR BCR . JD 15 BCR B 1 4018 4018 BCR BCR . KD 20 LMG B 1 5002 5002 LMG LMG . LD 16 LHG B 1 5004 5004 LHG LHG . MD 20 LMG B 1 5005 5005 LMG LMG . ND 16 LHG B 1 5006 5006 LHG LHG . OD 21 SQD B 1 5008 5008 SQD SQD . PD 22 CA B 1 6001 6001 CA CA . QD 12 CLA B 1 1238 1238 CLA CLA . RD 14 SF4 C 1 3002 3002 SF4 SF4 . SD 14 SF4 C 1 3003 3003 SF4 SF4 . TD 21 SQD F 1 5001 5001 SQD SQD . UD 12 CLA F 1 1301 1301 CLA CLA . VD 12 CLA F 1 1302 1302 CLA CLA . WD 15 BCR F 1 4014 4014 BCR BCR . XD 23 C7Z F 1 4016 4016 C7Z C7Z . YD 24 LMT F 1 6001 6001 LMT LMT . ZD 15 BCR I 1 4018 4018 BCR BCR . AE 25 EQ3 I 1 4020 4020 EQ3 EQ3 . BE 23 C7Z J 1 4015 4015 C7Z C7Z . CE 12 CLA J 1 1303 1303 CLA CLA . DE 12 CLA J 1 1302 1302 CLA CLA . EE 15 BCR J 1 4013 4013 BCR BCR . FE 12 CLA K 1 1401 1401 CLA CLA . GE 12 CLA K 1 1402 1402 CLA CLA . HE 15 BCR K 1 4001 4001 BCR BCR . IE 22 CA L 1 1001 1001 CA CA . JE 12 CLA L 1 1502 1502 CLA CLA . KE 19 ECH M 1 4021 4021 ECH ECH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PQN . . . AB 13 -48.433 -29.132 -42.379 1 19.77 ? C1 PQN 2001 A 1 HETATM 2 O O1 PQN . . . AB 13 -48.263 -28.02 -41.832 1 19.38 ? O1 PQN 2001 A 1 HETATM 3 C C2 PQN . . . AB 13 -49.007 -29.206 -43.751 1 19.32 ? C2 PQN 2001 A 1 HETATM 4 C C2M PQN . . . AB 13 -49.369 -27.925 -44.458 1 16.31 ? C2M PQN 2001 A 1 HETATM 5 C C3 PQN . . . AB 13 -49.196 -30.412 -44.349 1 22.79 ? C3 PQN 2001 A 1 HETATM 6 C C4 PQN . . . AB 13 -48.835 -31.671 -43.645 1 18.56 ? C4 PQN 2001 A 1 HETATM 7 O O4 PQN . . . AB 13 -49.014 -32.77 -44.21 1 18.63 ? O4 PQN 2001 A 1 HETATM 8 C C5 PQN . . . AB 13 -48.264 -31.622 -42.274 1 15.37 ? C5 PQN 2001 A 1 HETATM 9 C C6 PQN . . . AB 13 -47.926 -32.798 -41.618 1 13.56 ? C6 PQN 2001 A 1 HETATM 10 C C7 PQN . . . AB 13 -47.396 -32.743 -40.336 1 19.54 ? C7 PQN 2001 A 1 HETATM 11 C C8 PQN . . . AB 13 -47.201 -31.511 -39.718 1 29.03 ? C8 PQN 2001 A 1 HETATM 12 C C9 PQN . . . AB 13 -47.536 -30.331 -40.373 1 26.44 ? C9 PQN 2001 A 1 HETATM 13 C C10 PQN . . . AB 13 -48.068 -30.384 -41.655 1 20.14 ? C10 PQN 2001 A 1 HETATM 14 C C11 PQN . . . AB 13 -49.766 -30.53 -45.744 1 28.96 ? C11 PQN 2001 A 1 HETATM 15 C C12 PQN . . . AB 13 -48.622 -30.394 -46.722 1 31.13 ? C12 PQN 2001 A 1 HETATM 16 C C13 PQN . . . AB 13 -48.734 -30.747 -48.008 1 32.23 ? C13 PQN 2001 A 1 HETATM 17 C C14 PQN . . . AB 13 -50.01 -31.332 -48.535 1 29.18 ? C14 PQN 2001 A 1 HETATM 18 C C15 PQN . . . AB 13 -47.546 -30.576 -48.921 1 38.87 ? C15 PQN 2001 A 1 HETATM 19 C C16 PQN . . . AB 13 -47.974 -29.87 -50.201 1 39.88 ? C16 PQN 2001 A 1 HETATM 20 C C17 PQN . . . AB 13 -47.063 -30.285 -51.35 1 36.55 ? C17 PQN 2001 A 1 HETATM 21 C C18 PQN . . . AB 13 -47.563 -29.754 -52.687 1 28.43 ? C18 PQN 2001 A 1 HETATM 22 C C19 PQN . . . AB 13 -48.701 -30.609 -53.232 1 26.27 ? C19 PQN 2001 A 1 HETATM 23 C C20 PQN . . . AB 13 -46.386 -29.708 -53.653 1 27.01 ? C20 PQN 2001 A 1 HETATM 24 C C21 PQN . . . AB 13 -45.772 -28.313 -53.719 1 29.47 ? C21 PQN 2001 A 1 HETATM 25 C C22 PQN . . . AB 13 -44.335 -28.303 -53.204 1 29.17 ? C22 PQN 2001 A 1 HETATM 26 C C23 PQN . . . AB 13 -43.374 -29.018 -54.147 1 26.59 ? C23 PQN 2001 A 1 HETATM 27 C C24 PQN . . . AB 13 -42.557 -30.074 -53.409 1 27.21 ? C24 PQN 2001 A 1 HETATM 28 C C25 PQN . . . AB 13 -42.476 -27.993 -54.831 1 24.77 ? C25 PQN 2001 A 1 HETATM 29 C C26 PQN . . . AB 13 -42.071 -28.504 -56.207 1 28.64 ? C26 PQN 2001 A 1 HETATM 30 C C27 PQN . . . AB 13 -42.162 -27.398 -57.25 1 36.17 ? C27 PQN 2001 A 1 HETATM 31 C C28 PQN . . . AB 13 -41.563 -27.858 -58.572 1 42.45 ? C28 PQN 2001 A 1 HETATM 32 C C29 PQN . . . AB 13 -42.55 -28.73 -59.338 1 42.06 ? C29 PQN 2001 A 1 HETATM 33 C C30 PQN . . . AB 13 -41.107 -26.673 -59.416 1 50.1 ? C30 PQN 2001 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 33 #