data_6HQB # _model_server_result.job_id tIIMw6Fbi3xFbPC65y2Rkw _model_server_result.datetime_utc '2024-11-15 13:46:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hqb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"NB","auth_seq_id":4011}' # _entry.id 6HQB # _exptl.entry_id 6HQB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 564.84 _entity.id 17 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "beta,beta-carotene-4,4'-dione" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HQB _cell.length_a 124.322 _cell.length_b 178.658 _cell.length_c 181.446 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HQB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details undecameric _pdbx_struct_assembly.oligomeric_count 11 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD,PD,QD,RD,SD,TD,UD,VD,WD,XD,YD,ZD,AE,BE,CE,DE,EE,FE,GE,HE,IE,JE,KE _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 17 _struct_asym.id NB _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 123 A GLN 123 1_555 T MG CLA . A CLA 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc2 A OD1 ASP 469 A ASP 469 1_555 IE CA CA . L CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.152 ? metalc ? metalc3 A O THR 497 A THR 497 1_555 SA MG CLA . A CLA 1134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? metalc ? metalc4 B OE2 GLU 134 B GLU 134 1_555 PD CA CA . B CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc5 B OE1 GLU 201 B GLU 201 1_555 PD CA CA . B CA 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? covale ? covale1 B CA SER 481 B SER 481 1_555 ND C1 LHG . B LHG 5006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? covale ? covale2 B N ILE 482 B ILE 482 1_555 ND O2 LHG . B LHG 5006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? metalc ? metalc6 H OE2 GLU 28 J GLU 28 1_555 DE MG CLA . J CLA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.994 ? covale ? covale3 J N PRO 49 L PRO 70 1_555 LB O1D CLA . A CLA 1132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? metalc ? metalc7 J O PRO 49 L PRO 70 1_555 IE CA CA . L CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc8 J OD1 ASP 52 L ASP 73 1_555 IE CA CA . L CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc9 O O1A CLA . A CLA 1102 1_555 V MG CLA . A CLA 1109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? covale ? covale4 J CG2 ILE 130 L ILE 151 1_555 CE CMB CLA . J CLA 1303 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale5 J CD ARG 132 L ARG 153 1_555 VD C3 CLA . F CLA 1302 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 ? # _chem_comp.formula 'C40 H52 O2' _chem_comp.formula_weight 564.84 _chem_comp.id 45D _chem_comp.mon_nstd_flag . _chem_comp.name "beta,beta-carotene-4,4'-dione" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Isomer of Canthaxanthin' # _atom_sites.entry_id 6HQB _atom_sites.fract_transf_matrix[1][1] 0.008044 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005597 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005511 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 12 CLA A 1 1011 1011 CLA CLA . M 12 CLA A 1 1012 1012 CLA CLA . N 12 CLA A 1 1013 1013 CLA CLA . O 12 CLA A 1 1102 1102 CLA CLA . P 12 CLA A 1 1103 1103 CLA CLA . Q 12 CLA A 1 1104 1104 CLA CLA . R 12 CLA A 1 1105 1105 CLA CLA . S 12 CLA A 1 1106 1106 CLA CLA . T 12 CLA A 1 1107 1107 CLA CLA . U 12 CLA A 1 1108 1108 CLA CLA . V 12 CLA A 1 1109 1109 CLA CLA . W 12 CLA A 1 1110 1110 CLA CLA . X 12 CLA A 1 1111 1111 CLA CLA . Y 12 CLA A 1 1112 1112 CLA CLA . Z 12 CLA A 1 1113 1113 CLA CLA . AA 12 CLA A 1 1114 1114 CLA CLA . BA 12 CLA A 1 1115 1115 CLA CLA . CA 12 CLA A 1 1116 1116 CLA CLA . DA 12 CLA A 1 1117 1117 CLA CLA . EA 12 CLA A 1 1118 1118 CLA CLA . FA 12 CLA A 1 1119 1119 CLA CLA . GA 12 CLA A 1 1120 1120 CLA CLA . HA 12 CLA A 1 1121 1121 CLA CLA . IA 12 CLA A 1 1122 1122 CLA CLA . JA 12 CLA A 1 1123 1123 CLA CLA . KA 12 CLA A 1 1124 1124 CLA CLA . LA 12 CLA A 1 1125 1125 CLA CLA . MA 12 CLA A 1 1126 1126 CLA CLA . NA 12 CLA A 1 1127 1127 CLA CLA . OA 12 CLA A 1 1128 1128 CLA CLA . PA 12 CLA A 1 1129 1129 CLA CLA . QA 12 CLA A 1 1131 1131 CLA CLA . RA 12 CLA A 1 1133 1133 CLA CLA . SA 12 CLA A 1 1134 1134 CLA CLA . TA 12 CLA A 1 1135 1135 CLA CLA . UA 12 CLA A 1 1136 1136 CLA CLA . VA 12 CLA A 1 1137 1137 CLA CLA . WA 12 CLA A 1 1138 1138 CLA CLA . XA 12 CLA A 1 1139 1139 CLA CLA . YA 12 CLA A 1 1140 1140 CLA CLA . ZA 12 CLA A 1 1141 1141 CLA CLA . AB 13 PQN A 1 2001 2001 PQN PQN . BB 14 SF4 A 1 3001 3001 SF4 SF4 . CB 15 BCR A 1 4001 4001 BCR BCR . DB 15 BCR A 1 4003 4003 BCR BCR . EB 15 BCR A 1 4007 4007 BCR BCR . FB 15 BCR A 1 4008 4008 BCR BCR . GB 16 LHG A 1 5001 5001 LHG LHG . HB 16 LHG A 1 5003 5003 LHG LHG . IB 12 CLA A 1 1101 1101 CLA CLA . JB 15 BCR A 1 4012 4012 BCR BCR . KB 12 CLA A 1 1130 1130 CLA CLA . LB 12 CLA A 1 1132 1132 CLA CLA . MB 12 CLA B 1 1237 1237 CLA CLA . NB 17 45D B 1 4011 4011 45D 45D . OB 18 CL B 1 6000 6000 CL CL . PB 12 CLA B 1 1021 1021 CLA CLA . QB 12 CLA B 1 1022 1022 CLA CLA . RB 12 CLA B 1 1023 1023 CLA CLA . SB 12 CLA B 1 1201 1201 CLA CLA . TB 12 CLA B 1 1202 1202 CLA CLA . UB 12 CLA B 1 1203 1203 CLA CLA . VB 12 CLA B 1 1204 1204 CLA CLA . WB 12 CLA B 1 1205 1205 CLA CLA . XB 12 CLA B 1 1206 1206 CLA CLA . YB 12 CLA B 1 1207 1207 CLA CLA . ZB 12 CLA B 1 1208 1208 CLA CLA . AC 12 CLA B 1 1209 1209 CLA CLA . BC 12 CLA B 1 1210 1210 CLA CLA . CC 12 CLA B 1 1211 1211 CLA CLA . DC 12 CLA B 1 1212 1212 CLA CLA . EC 12 CLA B 1 1213 1213 CLA CLA . FC 12 CLA B 1 1214 1214 CLA CLA . GC 12 CLA B 1 1215 1215 CLA CLA . HC 12 CLA B 1 1216 1216 CLA CLA . IC 12 CLA B 1 1217 1217 CLA CLA . JC 12 CLA B 1 1218 1218 CLA CLA . KC 12 CLA B 1 1219 1219 CLA CLA . LC 12 CLA B 1 1220 1220 CLA CLA . MC 12 CLA B 1 1221 1221 CLA CLA . NC 12 CLA B 1 1222 1222 CLA CLA . OC 12 CLA B 1 1223 1223 CLA CLA . PC 12 CLA B 1 1224 1224 CLA CLA . QC 12 CLA B 1 1225 1225 CLA CLA . RC 12 CLA B 1 1226 1226 CLA CLA . SC 12 CLA B 1 1227 1227 CLA CLA . TC 12 CLA B 1 1228 1228 CLA CLA . UC 12 CLA B 1 1229 1229 CLA CLA . VC 12 CLA B 1 1230 1230 CLA CLA . WC 12 CLA B 1 1231 1231 CLA CLA . XC 12 CLA B 1 1232 1232 CLA CLA . YC 12 CLA B 1 1234 1234 CLA CLA . ZC 12 CLA B 1 1235 1235 CLA CLA . AD 12 CLA B 1 1236 1236 CLA CLA . BD 12 CLA B 1 1239 1239 CLA CLA . CD 12 CLA B 1 1240 1240 CLA CLA . DD 13 PQN B 1 2002 2002 PQN PQN . ED 15 BCR B 1 4004 4004 BCR BCR . FD 15 BCR B 1 4005 4005 BCR BCR . GD 19 ECH B 1 4006 4006 ECH ECH . HD 15 BCR B 1 4010 4010 BCR BCR . ID 15 BCR B 1 4017 4017 BCR BCR . JD 15 BCR B 1 4018 4018 BCR BCR . KD 20 LMG B 1 5002 5002 LMG LMG . LD 16 LHG B 1 5004 5004 LHG LHG . MD 20 LMG B 1 5005 5005 LMG LMG . ND 16 LHG B 1 5006 5006 LHG LHG . OD 21 SQD B 1 5008 5008 SQD SQD . PD 22 CA B 1 6001 6001 CA CA . QD 12 CLA B 1 1238 1238 CLA CLA . RD 14 SF4 C 1 3002 3002 SF4 SF4 . SD 14 SF4 C 1 3003 3003 SF4 SF4 . TD 21 SQD F 1 5001 5001 SQD SQD . UD 12 CLA F 1 1301 1301 CLA CLA . VD 12 CLA F 1 1302 1302 CLA CLA . WD 15 BCR F 1 4014 4014 BCR BCR . XD 23 C7Z F 1 4016 4016 C7Z C7Z . YD 24 LMT F 1 6001 6001 LMT LMT . ZD 15 BCR I 1 4018 4018 BCR BCR . AE 25 EQ3 I 1 4020 4020 EQ3 EQ3 . BE 23 C7Z J 1 4015 4015 C7Z C7Z . CE 12 CLA J 1 1303 1303 CLA CLA . DE 12 CLA J 1 1302 1302 CLA CLA . EE 15 BCR J 1 4013 4013 BCR BCR . FE 12 CLA K 1 1401 1401 CLA CLA . GE 12 CLA K 1 1402 1402 CLA CLA . HE 15 BCR K 1 4001 4001 BCR BCR . IE 22 CA L 1 1001 1001 CA CA . JE 12 CLA L 1 1502 1502 CLA CLA . KE 19 ECH M 1 4021 4021 ECH ECH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 45D . . . NB 17 -48.655 -18.028 -59.697 1 45.99 ? O01 45D 4011 B 1 HETATM 2 O O02 45D . . . NB 17 -27.903 -19.063 -48.395 1 68 ? O02 45D 4011 B 1 HETATM 3 C C03 45D . . . NB 17 -44.453 -17.901 -59.389 1 53.72 ? C03 45D 4011 B 1 HETATM 4 C C04 45D . . . NB 17 -27.439 -22.454 -50.634 1 67.42 ? C04 45D 4011 B 1 HETATM 5 C C05 45D . . . NB 17 -45.253 -18.885 -60.258 1 54.78 ? C05 45D 4011 B 1 HETATM 6 C C06 45D . . . NB 17 -26.23 -21.931 -49.853 1 67.71 ? C06 45D 4011 B 1 HETATM 7 C C07 45D . . . NB 17 -45.313 -17.074 -58.398 1 57.2 ? C07 45D 4011 B 1 HETATM 8 C C08 45D . . . NB 17 -28.291 -21.311 -51.213 1 64.24 ? C08 45D 4011 B 1 HETATM 9 C C09 45D . . . NB 17 -46.567 -18.312 -60.797 1 56.1 ? C09 45D 4011 B 1 HETATM 10 C C10 45D . . . NB 17 -26.636 -21.012 -48.705 1 65.33 ? C10 45D 4011 B 1 HETATM 11 C C11 45D . . . NB 17 -43.689 -16.932 -60.313 1 51.93 ? C11 45D 4011 B 1 HETATM 12 C C12 45D . . . NB 17 -43.436 -18.714 -58.582 1 52.92 ? C12 45D 4011 B 1 HETATM 13 C C13 45D . . . NB 17 -26.943 -23.34 -51.778 1 68.21 ? C13 45D 4011 B 1 HETATM 14 C C14 45D . . . NB 17 -28.315 -23.297 -49.687 1 67.55 ? C14 45D 4011 B 1 HETATM 15 C C15 45D . . . NB 17 -46.841 -17.11 -58.49 1 57.49 ? C15 45D 4011 B 1 HETATM 16 C C16 45D . . . NB 17 -28.169 -19.937 -50.557 1 64.9 ? C16 45D 4011 B 1 HETATM 17 C C17 45D . . . NB 17 -47.482 -17.838 -59.671 1 52.62 ? C17 45D 4011 B 1 HETATM 18 C C18 45D . . . NB 17 -27.597 -19.916 -49.148 1 65.04 ? C18 45D 4011 B 1 HETATM 19 C C19 45D . . . NB 17 -44.64 -16.23 -57.275 1 60.24 ? C19 45D 4011 B 1 HETATM 20 C C20 45D . . . NB 17 -29.524 -21.647 -52.105 1 59.51 ? C20 45D 4011 B 1 HETATM 21 C C21 45D . . . NB 17 -47.679 -16.119 -57.676 1 59.88 ? C21 45D 4011 B 1 HETATM 22 C C22 45D . . . NB 17 -27.95 -18.713 -51.458 1 68.78 ? C22 45D 4011 B 1 HETATM 23 C C23 45D . . . NB 17 -44.694 -16.695 -55.964 1 60.07 ? C23 45D 4011 B 1 HETATM 24 C C24 45D . . . NB 17 -30.714 -20.964 -52.037 1 54.37 ? C24 45D 4011 B 1 HETATM 25 C C25 45D . . . NB 17 -44.05 -15.895 -54.783 1 58.31 ? C25 45D 4011 B 1 HETATM 26 C C26 45D . . . NB 17 -31.828 -21.457 -53.007 1 53.1 ? C26 45D 4011 B 1 HETATM 27 C C27 45D . . . NB 17 -44.686 -14.598 -54.31 1 60.19 ? C27 45D 4011 B 1 HETATM 28 C C28 45D . . . NB 17 -31.434 -22.387 -54.149 1 52.21 ? C28 45D 4011 B 1 HETATM 29 C C29 45D . . . NB 17 -42.922 -16.362 -54.169 1 55.38 ? C29 45D 4011 B 1 HETATM 30 C C30 45D . . . NB 17 -33.151 -21.108 -52.881 1 54.11 ? C30 45D 4011 B 1 HETATM 31 C C31 45D . . . NB 17 -42.317 -15.558 -53 1 55.38 ? C31 45D 4011 B 1 HETATM 32 C C32 45D . . . NB 17 -33.737 -20.18 -51.798 1 54.88 ? C32 45D 4011 B 1 HETATM 33 C C33 45D . . . NB 17 -41.516 -16.198 -52.1 1 59.09 ? C33 45D 4011 B 1 HETATM 34 C C34 45D . . . NB 17 -34.95 -19.66 -52.087 1 56.22 ? C34 45D 4011 B 1 HETATM 35 C C35 45D . . . NB 17 -40.91 -15.4 -50.909 1 67.06 ? C35 45D 4011 B 1 HETATM 36 C C36 45D . . . NB 17 -35.737 -18.702 -51.159 1 59.03 ? C36 45D 4011 B 1 HETATM 37 C C37 45D . . . NB 17 -39.64 -15.604 -50.521 1 68.06 ? C37 45D 4011 B 1 HETATM 38 C C38 45D . . . NB 17 -37.04 -18.438 -51.458 1 63.56 ? C38 45D 4011 B 1 HETATM 39 C C39 45D . . . NB 17 -41.793 -14.382 -50.181 1 66.66 ? C39 45D 4011 B 1 HETATM 40 C C40 45D . . . NB 17 -35.052 -18.059 -49.948 1 59.1 ? C40 45D 4011 B 1 HETATM 41 C C41 45D . . . NB 17 -38.744 -16.623 -51.264 1 66.8 ? C41 45D 4011 B 1 HETATM 42 C C42 45D . . . NB 17 -37.904 -17.477 -50.604 1 64.16 ? C42 45D 4011 B 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 42 #